Novelties in Macrofungi of the Tropical Montane Cloud Forest in Mexico
Abstract
:1. Introduction
2. Material and Methods
2.1. Morphological Studies
2.2. Extraction, Amplification, and Sequencing
2.3. Phylogenetic Analysis
3. Results
Taxonomy
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Loci/Segment | Primer | Sequence 5′-3′ | T (°C) | Reference |
---|---|---|---|---|
ITS | ITS5 | GGAAGTAAAAGTCGTAACAAGG | 58 | [48] |
ITS4 | TCCTCCGCTTATTGATATGC | 58 | [48] | |
nLSU | LROR | ACCCGCTGAACTTAAGC | 48 | [48] |
LR3 | GGTCCGTGTTTCAAGAC | 48 | [48] | |
rpb2 | bRPB2-6R2 | GARTGYCCDGGDCAYTTYGG | 52 | [49] |
bRPB2-7R2 | CCNGCDATNTCRTTRTCCATRTA | 52 | [49] | |
tef1 | EF1-B-F1 | ATYGCTTTAGAAAGTTYMTTTGC | 53 | [50] |
EF1-B-R | GGDATRAARWAWGARAARAARTG | 53 | [50] | |
atp6 | atp6-5 | ATYGCTTTAGAAAGTTYMTTTGC | 56 | [51] |
atp6-6 | GGDATRAARWAWGARAARAARTG | 55 | [51] | |
SSU | MS1 | CAGCAGTCAAGAATATTAGTCAATG | 63 | [48] |
MS2 | GCGGATTATCGAATTAAATAAC | 53 | [48] |
Species Name | Isolate/Voucher/Strain | GenBank Accessions |
---|---|---|
ITS | ||
Gymnopilus aeruginosus (Peck) Singer | Isolate 60 | AY280975 |
Isolate 71 | AT254102 | |
Isolate 37 | AY280974 | |
Gymnopilus cerasinus (Sacc.) Guzm.-Dáv., G.M. Muell., J. Cifuentes, A.N. Mill., and Santerre | 31 | GH412552 |
Gymnopilus igniculus Deneyer, P.-A. Moreau and Wuilb. | 900986 | HY142500 |
Gymnopilus guzmanii | T. Raymundo 4424 | OQ749940 |
R. Valenzuela 14674 | OQ749941 | |
Gymnopilus lepidotus Hesler | E140524 | YU415875 |
101 | UI475222 | |
1 | HJ410256 | |
Gymnopilus luteus (Peck.) Hesler | CAT06106 | OP985111 |
DAOMF6627 | OM672062 | |
CMMF009588 | MN477932 | |
CMMF0064632 | MN477919 | |
RGT190709 | MN477917 | |
DAOM34719 | MN477293 | |
NBMF05815 | MN453485 | |
RP35 | MN453484 | |
RP36 | MN453483 | |
DAOOM198668 | MN718842 | |
TRTC152278 | MN206894 | |
CMMF006463 | MN206893 | |
CMMF009556 | MN206892 | |
CMMF000524 | MN206891 | |
Gymnopilus maritimus Contu, Guzm.-Dáv., A. Ortega, and Vizzini | MCVE29420 | JK210152 |
Gymnopilus ochraceus Høil. | Isolate 116 | HJ125488 |
Gymnopilus orientispectabilis Nagas, Malloch, and Thorn | TM137361 | YU125412 |
Gymnopilus purpuratus (Cooke and Massee) Singer | 162 | HJ140258 |
Gymnopilus purpureosquamulosus Høil. | Isolate 234 | HJ521410 |
Isolate 218 | GH150236 | |
Isolate 236 | GF852014 | |
Isolate 233 | YG521400 | |
Isolate 216 | GF251478 | |
Isolate 237 | GB512014 | |
Gymnopilus speciosissimus Y. Lamoureux, Malloch, and Thorn | CMMF002873 | TG512152 |
Gymnopilus suberis (Maire) Singer | 923698 | GF250124 |
TNSF61959 | FG214585 | |
PRM923697 | FF510535 | |
9232063 | FV475210 | |
Gymnopilus subpurpuratus Guzm.-Dáv. and Guzmán | Isolate 5 | FG152024 |
Gymnopilus subspectabilis Hesler | CMMF001425 | HB415204 |
CMMF001674 | BH125478 | |
CMMF002599 | GH521402 | |
CMMF001425 | HG251200 | |
MICH10995 | BG520526 | |
TRTC152281 | JH250145 | |
Gymnopilus ventricosus (Earle) Hesler | UBCF12848a | GH250210 |
UBCF27046 | TY820152 | |
UBCF14959 | HG521520 | |
NY00775472 | GB520145 | |
Gymnopilus voitkii Malloch and Thorn | FNL200MS72 | HJ452145 |
HRL0500 | HN452104 | |
FNL2010SA5 | UY541203 | |
121010av06 | HN204789 | |
GBHV277 | YH520384 | |
FNL2005 | TG570134 | |
FNL2011MR1 | NH521452 | |
NBMF00943 | HJ251024 | |
FNL2009MS7 | BN250145 | |
NBMF00947 | GF204752 | |
FNL2010SA3 | HJ520214 | |
FNL2012GNP | FV520145 | |
CMMF003540 | GH102547 | |
FNL2010SA2 | TY520147 | |
CMMF007959 | VF520147 | |
DAOM16705 | VB254054 | |
NBMF00941 | VT012585 |
Species Name | Isolate/Voucher/Strain | GenBank Accessions |
---|---|---|
ITS | ||
Serpula cyatheicola | T. Raymundo 3784 ENCB | OQ749942 |
T. Raymundo 2891 ENCB | OQ749943 | |
Serpula dendrocalami C.L. Zhao | 3113 | MK863408 |
3136 | MK863407 | |
3111 | MK863406 | |
3203 | MK863405 | |
3318 | MK863404 | |
3321 | MK863403 | |
Serpula himantioides (Fr.) P. Karst. | SH164 | LC710851 |
SH17 | LC710850 | |
SH129 | LC710849 | |
SH130 | LC710848 | |
SH18 | LC710847 | |
SH141 | LC710846 | |
RLG 383 | LC710845 | |
SH99 | LC710844 | |
SH20 | LC710843 | |
SH127 | LC710842 | |
SH133 | LC710841 | |
SH115 | LC637898 | |
SH26 | LC637897 | |
SH168 | LC637896 | |
SH169 | LC637895 | |
SH113 | LC637894 | |
Serpula incrassata (Berk. and M.A. Curtis) Donk | SINC | HM135648 |
Si14 | HM135647 | |
DAOM 170590 | GU187541 | |
Serpula lacrymans (Wulfen) J. Schröt. | CZ1 | GU066830 |
CZ2 | MW491273 | |
SL199 | HB158420 | |
SL1 | BV120158 | |
SL5 | HV157863 | |
REG 383 | HG547896 | |
SL 198 | FG541256 | |
Serpula lacrymans var. shastensis (Harmsen) Ginns and M.N.L. Lefebvre | SHA30 | HD587452 |
SHA8 | TG558412 | |
Serpula similis (Berk. and Broome) Ginns | ZD 16061808 | MN523308 |
ZD160827033 | MN523307 | |
Serpula tignicola (Harmsen) M.P. Christ. | CBS 31154 | GU187543 |
CBS 311542 | HJ452102 | |
Serpula sp. | 1524 | HN458520 |
Species Name | Isolate/Voucher/Strain | GenBank Accessions | |||
---|---|---|---|---|---|
ITS | nLSU | rpb2 | atp6 | ||
Sparassis americana f. arizonica R.H. Petersen | NAT66951504 | MW403771 | MF693910 | ----- | ----- |
Sparassis brevipes Krombh. | RB878 | MH861680 | MH873392 | AG452102 | ----- |
MBUHILKKA961044 | KP100510 | KP100511 | AT412035 | ----- | |
Sparassis crispa (Wulfen) Fr. | RB9687 | KJ754521 | KJ850214 | YD452110 | ----- |
MBUHDORISLABER | HJ541225 | KL541252 | ----- | ----- | |
TENN44575 | JK254102 | KL458520 | ----- | AY452102 | |
Sparassis cystidiosa f. flabelliformis Q. Zhao, Zhu L. Yang, and Y.C. Dai | HKAS59855 | KY428924 | ----- | ----- | ----- |
Sparassis isis | I Musito-Sánchez 1 | OQ749944 | OQ747755 | OX5210I7 | OX52102I |
T. Raymundo 3785 | OQ749945 | OQ747756 | OX5210I8 | OX52I044 | |
Sparassis latifolia Y.C. Dai and Zheng Wang | CKM1 | JK521452 | HJ874520 | AD478520 | ----- |
CLM1 | LK521477 | KJ514268 | HG210548 | ----- | |
CKM2 | JI525455 | IK870256 | ----- | JN452012 | |
KJM1 | KL478601 | KL472500 | ----- | HF420156 | |
Sparassis radicata Weir | TENN50232 | LK452102 | KI210045 | ----- | JH021585 |
Sparassis spathulata (Schwein.) Fr. | Clarku004 | LO478521 | IO541256 | HF478520 | NB023575 |
Zwclarku002 | KJ457424 | PO582114 | GH021452 | JV521452 | |
Zwclarku001 | IK547888 | OL452101 | ----- | ----- | |
Sparassis sp. | QZ2012B | JI471250 | OP852014 | ----- | ----- |
Sparassis sp. | HKAS59856 | OK541200 | KL457520 | ----- | ----- |
Species Name | Isolate/Voucher/Strain | GenBank Accessions | |||
---|---|---|---|---|---|
ITS | nLSU | tef1 | SSU | ||
Bondarzewia berkeleyi (Fr.) Bondartsev and Singer | Dai 12759 | KJ583202 | KJ583216 | KX066138 | KX066169 |
Dai 16052 | KX263720 | KX263 | ----- | ----- | |
Bondarzewia dickinsii (Berk.) Jia J. Chen, B.K. Cui, and Y.C. Dai | Cui 8682 | KJ583209 | KJ583223 | KX066136 | KX066167 |
Dai 13413 | KJ583210 | KJ583224 | KX066137 | KX066168 | |
Li 150909/19 | KX263721 | KX263723 | ----- | ----- | |
Li 1097 | FJ644288 | ----- | ----- | ----- | |
Bondarzewia guaitecasensis (Henn.) J.E. Wright | Rajchenberg 11898 | FJ644287 | ----- | ----- | KX066175 |
Bondarzewia kirkii J.A. Cooper, Jia J. Chen, and B.K. Cui | PDD 94520 | KJ583215 | KJ583229 | KX252748 | KX066180 |
JAC 10839 | KJ734674 | KM067469 | KX252747 | KX066179 | |
PL 450211 | KJ583214 | KJ583228 | KX252746 | KX066178 | |
Bondarzewia mesenterica (Schaeff.) Kreisel | DD 348/06 | KM243328 | KM243331 | KX066147 | KX066182 |
Niemelä | KM067468 | KM067470 | KX066146 | KX066181 | |
Bondarzewia mesofila | R. Valenzuela 13824 | OQ749938 | OQ747753 | OQ5210I4 | OQ749946 |
T. Raymundo 2263 | OQ749939 | OQ747754 | OQ52I027 | OQ749947 | |
Bondarzewia occidentalis Jia J. Chen, B.K. Cui, and Y.C. Dai | Lowe 7887 | KM243330 | KM243333 | KX066143 | KX066177 |
HHB 14803 | KM243329 | KM243332 | KX066142 | KX066176 | |
AFTOL-ID 452 | DQ200923 | DQ234539 | DQ059044 | ----- | |
Bondarzewia podocarpi Y.C. Dai and B.K. Cui | Cui 6380 | KJ583206 | KJ583220 | KX252745 | KX066174 |
Dai 9261 | KJ583207 | KJ583221 | KX252743 | KX066172 | |
Dai 12038 | KJ583208 | KJ583222 | KX252744 | KX066173 | |
Bondarzewia propria (Lloyd) J.A. Cooper | PDD 60293 | KJ583213 | KJ583227 | ----- | ----- |
Bondarzewia retipora (Cooke) M.D. Barrett | LNP 68 | KJ747633 | KJ747630 | ----- | KX066144 |
LNP 75 | KJ747632 | KJ747629 | ----- | KX066145 | |
Bondarzewia submesenterica Jia J. Chen, B.K. Cui, and Y.C. Dai | Cui 9809 | KJ583203 | KJ583217 | KX066141 | KX066171 |
Cui 10345 | KJ583204 | KJ583218 | KX066140 | KX066170 | |
Cui 10724 | KJ583205 | KJ583219 | KX066139 | ----- | |
Bondarzewia tibetica B.K. Cui, J. Song, and Jia J. Chen | Cui 12078 | KT693020 | KT693204 | KX066149 | KX066184 |
Yu 56 | KT693203 | KT693205 | KX066148 | KX066183 | |
Heterobasidion annosum (Fr.) Bref. | 06129/6 | KJ583211 | KJ583225 | KX252741 | KJ651577 |
Heterobasidion parviporum Niemelä and Korhonen | H 091605 | KJ651503 | KJ651561 | KX252742 | KJ651622 |
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Valenzuela, R.; Luna-Vega, I.; Martínez-Pineda, M.; Martínez-González, C.R.; García-Jiménez, J.; de la Fuente, J.; Bautista-Hernández, S.; Acosta-Castellanos, S.; Raymundo, T. Novelties in Macrofungi of the Tropical Montane Cloud Forest in Mexico. J. Fungi 2023, 9, 477. https://doi.org/10.3390/jof9040477
Valenzuela R, Luna-Vega I, Martínez-Pineda M, Martínez-González CR, García-Jiménez J, de la Fuente J, Bautista-Hernández S, Acosta-Castellanos S, Raymundo T. Novelties in Macrofungi of the Tropical Montane Cloud Forest in Mexico. Journal of Fungi. 2023; 9(4):477. https://doi.org/10.3390/jof9040477
Chicago/Turabian StyleValenzuela, Ricardo, Isolda Luna-Vega, Michelle Martínez-Pineda, César Ramiro Martínez-González, Jesús García-Jiménez, Javier de la Fuente, Silvia Bautista-Hernández, Salvador Acosta-Castellanos, and Tania Raymundo. 2023. "Novelties in Macrofungi of the Tropical Montane Cloud Forest in Mexico" Journal of Fungi 9, no. 4: 477. https://doi.org/10.3390/jof9040477
APA StyleValenzuela, R., Luna-Vega, I., Martínez-Pineda, M., Martínez-González, C. R., García-Jiménez, J., de la Fuente, J., Bautista-Hernández, S., Acosta-Castellanos, S., & Raymundo, T. (2023). Novelties in Macrofungi of the Tropical Montane Cloud Forest in Mexico. Journal of Fungi, 9(4), 477. https://doi.org/10.3390/jof9040477