A Bottom-Up Review of Image Analysis Methods for Suspicious Region Detection in Mammograms
Abstract
:1. Introduction
1.1. Motivation and Study Criteria
- Which are various techniques to extract low-level image features from mammograms?
- What machine learning approaches tackle the detection of a mistrustful region in breast images?
- What are the various supervised and unsupervised deep learning approaches used for breast image analysis to detect and/or classify a suspicious region from a mammography image?
- What are the most commonly cited and publicly available mammogram datasets?
1.2. Paper Organization
2. Breast Cancer: Clinical Aspects
2.1. Breast Positioning and Projection View
2.2. Various Forms of Breast Abnormalities
- Mass: A mass is a 3D lesion that can be seen in various projections. Morphological features, such as shape, margin and density, are used for mass characterisation. The shape can be round, oval or irregular. The margin can be not well defined, microlobulated, speculated, indistinct or circumscribed. Figure 4 shows the graphical representation of these morphological features (shape and margin) of a mass along with their subcategories. When superimposed breast tissues hide margins, that is called obscured or partially obscured. Microlobulated infers a suspicious finding. Spiculated margin with radiating lines is also a suspicious finding. Indistinct, also termed as ill-defined, is a suspicious finding too. Circumscribed is a well-defined mass that is a benign finding. Density can be high, low or fat-containing. The density of a mass is related to the expected attenuation of an equal volume of a fibroglandular tissue [6,20]. High density is associated with malignancy.
- Architectural distortion: This abnormality is found when normal architecture is distorted without certain mass visibility. Architectural distortion may include straight thin lines, speculated radiating lines, or focal retraction [6,20]. This abnormality can be seen as an additional feature. If there is a mass with distortion, it is likely to be malignant.
- Calcification: Calcifications are tiny spots of calcium that develop in the breast tissues. Arrangement of calcifications can be diffuse, regional, cluster, linear or segmental [6,20]. There are two types; macrocalcification and microcalcification. Macrocalcifications are large dots of white colour and often spread randomly within the breast area. Microcalcifications are small deposits of calcium, usually non-cancerous, but if visualised as particular patterns and clustered, they may reveal an early sign of malignancy.
- BI-RADS 0 (Assessment Incomplete)—Need further assistance.
- BI-RADS 1 (Normal)—No evidence of lesion.
- BI-RADS 2 (Benign)—Non-cancerous lesion (calcified lesion with high density).
- BI-RADS 3 (Probably benign) —Non-calcified circumscribed mass/obscured mass.
- BI-RADS 4 (Suspicious abnormality)—Microlubulated mass.
- BI-RADS 5 (High probability of malignancy)—Indistinct and spiculated mass.
- BI-RADS 6 (Proven malignancy)—Biopsy-proven malignancy (to check the extent and presence in the opposite breast).
3. Mammogram Datasets
Origin and Year | Total Cases | Total Images (Approx) | View Type | Image Type | Annotation | Reference Link for the Dataset | |
---|---|---|---|---|---|---|---|
SureMaPP | UK, 2020 | 145 | 343 | MLO | DICOM | Centre and radious of circle enclosing the abnormality | https://mega.nz/#F!Ly5g0agB!%E2%80%91QL9uBEvoP8rNig8JBuYfw (accessed on 27 October 2020) |
DDSM | USA, 1999 | 2620 | 10000 | MLO, CC | LJPEG | Pixel level boundary around abnormality | http://www.eng.usf.edu/cvprg/Mammography/Database.html (accessed on 31 May 2021) |
CBIS-DDSM | USA, 1999 | 6775 | 10239 | MLO, CC | DICOM | Pixel level boundary around abnormality | https://wiki.cancerimagingarchive.net/display/Public/CBIS-DDSM (accessed on 31 May 2021) |
INBreast | Portugal, 2011 | 115 | 422 | MLO, CC | DICOM | Pixel level boundary around abnormality | http://medicalresearch.inescporto.pt/breastresearch/GetINbreastDatabase.html (Link is taken from the base paper. Accessed on 31 May 2021) |
MIAS | 161 | 322 | MLO | PGM | Centre and radious of circle enclosing the abnormality | https://www.repository.cam.ac.uk/handle/1810/250394 (accessed on 31 May 2021) | |
BCDR | Portugal, 2012 | 1734 | 7315 | MLO, CC | TIFF | Unknown | https://bcdr.eu/information/about (accessed on 31 May 2021) |
IRMA | Germany, 2008 | Unknown | 10509 | MLO, CC | Several | Several | https://www.spiedigitallibrary.org/conference-proceedings-of-spie/6915/1/Toward-a-standard-reference-database-for-computer-aided-mammography/10.1117/12.770325.short?SSO=1 (accessed on 31 May 2021) |
BancoWeb LAPIMO | Brazil, 2010 | 320 | 1473 | MLO, CC | TIFF | ROI for few images | http://lapimo.sel.eesc.usp.br/bancoweb (assessed on 31 May 2021) |
3.1. SureMaPP
3.2. DDSM
3.3. CBIS-DDSM
3.4. INBreast
3.5. MIAS
3.6. BCDR
3.7. IRMA
3.8. BancoWeb LAPIMO
4. Related Techniques
4.1. Low Level Image Features
4.1.1. Shape Based Features
Shape Descriptor Analysis Approaches
Shape Descriptors for Classification Systems
Pros and Cons
4.1.2. Texture-Based Features
Texture Descriptors’ Analysis
Texture Descriptors for Classification Systems
Pros and Cons
4.1.3. Local Keypoint Descriptors
Local Keypoint Descriptor Analysis
Local Keypoint Descriptors for Classification Systems
Pros and Cons
Reference | Technique | Task Performed | Dataset | Performances |
---|---|---|---|---|
[39] | Fractal Analysis | Mass Classification | Local Dataset San Paolo Hospital, Bari, Italy | Area under ROC: 0.97 |
[44] | Local contour features, +SVM | Mass Classification | DDSM | Accuracy: 99.6% |
[45] | Multiple instance learning: textural and shape features + K-means | Mass Classification | DDSM and MIAS | Sensitivity: 95.6% on DDSM 94.78% on MIAS |
[46] | Spatial and Morphology domain features | Microcalcification clusters’ detection | USUHS | Sensitivity: 97.6% |
[47] | Multiwavelet, wavelet, Haralick, and shape features | Microcalcification classification | Nijmegen Database | Area under ROC: 0.89 |
[48] | Zernike moments | Classification of mammographic mass lesions | Local dataset | Precision: 80% Recall: 20% |
[41] | Spiculation Index, Fractional Concavity, Compactness | Mass Classification | MIAS | Area under ROC: 0.82 Accuracy: 80% |
[42] | Average Gradient and Shape Based Feature | Pectoral Muscle Detection | MIAS a local database | False Positives (FP) and False Negatives (FN): FP on MIAS 4.22%, FN on MIAS 3.93%; |
[49] | Shape features and Haralick features. | Microcalcification classification | Nijmegen Database | Area under ROC: Shape Features 0.82; Haralick Features 0.72 |
[50] | Swarm optimisation (PSO) algorithm and k-nearest classifier | Microcalcification cluster detection | MIAS and a local dataset from the Bronson Methodist hospital | Accuracy: 96% on MIAS, 94% on BMH |
[51] | Texture and Morphological Features | Mass Classification | local database | Area under ROC: 0.91 ± 0.02 |
[40] | Morphological Features | Mass Detection | DDSM | Sensitivity: 92% |
[52] | Geostatistical and concave geometry (Alpha Shapes) | Mass Detection | MIAS and DDSM | Detection rate: 97.30% on MIAS and 91.63% on DDSM |
[53] | Co-occurrence matrices, wavelet and ridgelet transforms | Mass Classification | Local Database | AUC = 0.90 |
[58] | Local Binary Pattern | Breast Mass Recognition | MIAS | Sensitivity 99.65% Specificity 99.24% |
[54] | Local texture feature and KL Transform | Enhancing texture irregularities | Inbreast | True Positive 96% False Positive 65% False Negative 4% |
[59] | GLCM and GLRLM features | Mass Classification | DDSM | Accuracy 93.6% |
[43] | Pixel intensity and Morphological Features | Nipple detection | 144 Mammograms (Local Dataset) | Detection Rate 97.92% |
Reference | Technique | Task Performed | Dataset | Performances |
---|---|---|---|---|
[55] | Texture Feature and Lattice Points | Mammographic Percent Density | Local Database | Area under Curve: 0.60–0.74 |
[60] | local patterns | Mass Classification | INBreast and MIAS | Accuracy: 82.50% on INBreat 80.30% on MIAS |
[61] | morphological Top-Hat transform | mass and microcalcification detection | MIAS | Sensitivity and Specificity: 99.02% 99.94% |
[62] | Texture Features analysis with GPU | Texture analysis in mammograms | DDSM and MIAS | CPU and GPU time on each picture |
[56] | GLCM features and optical density features | Mass Detection | DDSM | Sensitivity 99% |
[57] | Density Slicing and Texture Flow-Field Analysis | Mass Detection | MIAS | Area under Curve: 0.79 |
[63] | Mixture of Gaussian distribution for texture analysis in mammograms | Architectural Distortion Detection in Mammograms | MIAS and DDSM | MIAS Sensitivity 85.5% Specificity 81.0% DDSM Sensitivity 89.2% Specificity 86.7% |
[70] | FC-VGG16 + SIFT, SURF, ORB, BRISK, and KAZE | Mass Classification | MIAS | SIFT + FC MobileNetV2 Specificity 100%; Sensitivity 100%; |
[67] | SIFT features, Vocabulary Tree and Contextual Information | Mass Classification | Local dataset of 11553 ROIs from Mammograms | Accuracy 90.8% |
[68] | SIFT features | Segmentation of Microcalcifications | MIAS | - |
[71] | Scale-Invariant Feature and K-means clustering | ROI (Region of Interest) detection in mammograms | 4 mammograms from MIAS | - |
[72] | Local Descriptors and (pLSA) | Parenchymal Tissue Classification | MIAS and DDSM | Accuracy on MIAS 95.42%; DDSM 84.75% |
[73] | SIFT, LBP and Texton Histograms and SVM | Breast Density Classification | MIAS | Accuracy 93% |
[74] | Bag of Features (BoF) and SVM | Mass Classification | DDSM | Sensitivity 100% Specificity 99.24% |
[69] | Histogram Specification and SURF features | Mass Detection | MIAS | Sensitivity 0.89 |
[75] | Optimised SURF | Mass Classification | MIAS and DDSM | MIAS Accuracy 92.30% DDSM Accuracy 96.87% |
[76] | LBP plus classifiers (KNN, SVM, Gp, AB) | Abnormality Classification | DDSM | Precision 94.60% Recall 95% |
4.2. Feature Engineering
4.3. Machine Learning
4.3.1. Artificial Neural Networks
Artificial Neural Networks for Mammogram Analysis
4.3.2. Clustering Techniques
Clustering Techniques for Mammogram Analysis
4.3.3. Support Vector Machine (SVM)
SVM for Mammogram Analysis
Reference | Technique | Task Performed | Dataset | Model Performace |
---|---|---|---|---|
[101] | Clustering | Mass Segmentation | MIAS | K-means: 91.18% Fuzzy c-means: 94.12% |
[102] | Clustering | Mass Detection | DDSM | Accuracy: 90% |
[103] | Clustering | Suspicious Lesion Segmentation | MIAS | Accuracy: 84.32% |
[109] | SVM | Microcalcification Detection | InBreast | ROC: 0.8676 Sensitivity: 92% FPR: 2.3 clusters/image |
[110] | SVM | Mass Detection, Mass Classification | DDSM | Sensitivity: 92.31% Specificity: 82.2% Accuracy: 83.53% ROC: 0.8033. |
[111] | SVM | Tumor Detection | USFDM, MIAS | Precision:0.98 Sensitivity: 0.73 Specificity: 0.99 Accuracy: 0.81 Score: 0.758 |
[112] | SVM | Segmentation, Classification | MIAS | Accuracy: 96.55% |
[113] | SVM | Abnormality Detection | IRMA, DDSM | IRMA: Sensitivity: 99% Specificity: 99% DDSM: Sensitivity: 97% Specificity: 96% |
[114] | SVM | Mammogram Classification | MIAS | Accuracy: 94% |
[89] | ANN | Lesion Classification | Mammography Atlas | ROC: 0.95 |
[90] | ANN | Mammogram Feature Analysis | Private | ROC: 0.91 Specificity: 62% Sensitivity: 95%. |
[91] | MLP, RBFNN | Microcalcification Detection | MIAS | Positive detection rate: 94.7% False positives per image: 0.2% |
[94] | SVM, ANN | Microcalcification Characterization | MIAS | SVM: Original feature set, Az: 0.81 Enhanced feature set, Az: 0.80 ANN: Original feature set, Az: 0.73 Enhanced feature set, Az: 0.78 |
[95] | ANN | Detect and Classify Masses | DDSM | AUC = 0.925 |
[96] | ANN | Detection of Mass and Architectural Distortion | Private | TPF: 0.620 |
[97] | ANN | Detection of Breast Cancer | Private | AUC = 0.779 ± 0.025 |
[98] | ANN | Mass Detection | MIAS | Recognition Rate = 97.08% |
Pros and Cons of Machine Learning Approaches
4.4. Deep Learning Approaches
4.4.1. Supervised Deep Learning
Fully Convolutional Network (FCN)
Reference | Technique | Task Performed | Dataset | Model Performace |
---|---|---|---|---|
[116] | FCN | Breast Density Estimation | Private | Pearson’s rho values: CC View: 0.81 MLO View: 0.79 |
[117] | FCN | Mass Segmentation | DDSM, INBreast | DDSM: Dice similarity coefficient: 0.915 ± 0.031 Hausdorff distance: 6.257 ± 3.380 INBreast: Dice similarity coefficient: 0.918 ± 0.038 Hausdorff distance: 2.572 ± 0.956 |
[118] | FC-Densenet | Tumor Segmentation | Private | Dice Index: 0.7697 Pixel Accuracy: 0.7983 Intersection Over Union: 0.6041 |
[119] | Unet | Mass and Calcification Detection | CBIS-DDSM, INBreast | MassDice score: 67.3% Sensitivity: 70.3% |
[120] | Attention Dense—Unet | Mass Segmetation | DDSM | F1 Score: 82.24 ± 0.06 Sensitivity: 77.89 ± 0.08 Specificity: 84.69 ± 0.09 Accuracy: 78.38 ± 0.04 |
[121] | Dense-Unet | Calcification Detection | CBIS-DDSM | Accuracy: 91.47% Sensitivity: 91.22% Specificity: 92.01% F1 Score: 92.19% |
[122] | CSA Block, Cascade RCNN | Mass Detection | Private, CBIS-DDSM | Average precision: 0.822 Average recall: 0.949 |
[123] | Faster RCNN | Mass Detection | INBreast, Private | TPR—0.88 FPs/I—0.85 |
[124] | Faster RCNN | Mass Detection | OMI, INBreast | TPR at FPI: OMI-H: 0.93 at 0.78 OMI-H OMI-G: 0.91 ± 0.06 at 1.70 Inbreast: 0.92 ± 0.08 at 0.30 0.85 ± 0.08 at 1.0 0.95 ± 0.03 at 1.14 |
[125] | RCNN | Architecturak Distrotion Detection | DDSM | Sensitivity and specificity: 80% FPI: 0.46, TPR: 83% |
[126] | Faster RCNN | Mass Detection | DDSM | Average Precision: Inception ResNet V2: 0.85 |
[127] | Mask RCNN-FPN | Multi Detection and Segmentation of Breast Lesions | DDSM, INBreast | Overall Accuracy: 91% |
[128] | Faster RCNN | Mass Detection | Private | AUC: 0.96 |
[129] | Faster RCNN | Detection and Classification of Mammogram Lesions | INBreast | AUC: 85% |
[130] | GAN, ResNet | Data Augmentation, Mammogram Classification | DDSM | AUC: 0.896 |
[131] | GAN, U-Net | Data Augmentation, Classification | OMID | AUC: 0.846 |
[132] | GAN | Mass Image Synthesis | DDSM, Private | AUC DDSM: 0.172 Private: 0.144 |
[133] | CycleGAN | Mass Image Synthesis | BCDR, INBreast | - |
[134] | GAN | Mammogram Synthesis | Private | - |
[135] | Sparse Autoencoder | Breast Density Segmentation | Private | PMD scores on AUC: 0.59 |
[136] | Sparse Autoencoder | Breast Asymmetry Analysis | Private | Sensitivity: 0.97 |
[137] | Denoising Autoencoders | Breast Density Scoring | Private | AUC: 0.68 |
[138] | Stacked Autoencoders | Mammogram Classification | MIAS | 98.50% |
[139] | Sparse Autoencoder, ML classifiers | Mass Classification | MIAS | Accuracy by Random forest: 98.89% |
[140] | Autoencoder | Mammography Classification | INBreast, IRMA | Accuracy: 98.45% |
FCN for Mammogram Segmentation
Region Based Neural Networks
Region Based Convolutional Neural Networks (R-CNN)
- The approach is not suitable for real-time applications because of its computational cost.
- Selective search approach is not flexible; no learning takes place in it.
- Training happens in three phases; CNN fine-tuning, SVM training and bounding box regressor on thousands of candidate proposals.
- For all region proposals, it is necessary to save feature maps that need a large amount of memory space during training.
Fast RCNN
- The CNN architecture takes image (size = for VGG-16) and its region proposal and outputs the convolution feature map (size = for VGG-16).
- Last pooling layer (layer before fully connected layer) is replaced with a region of interest pooling layer.
- Final fully connected layer and softmax layer are replaced by twin softmax layers and a bounding box regressor.
Faster R-CNN
Region Based Neural Networks for Mammogram Analysis
4.4.2. Unsupervised Deep Learning
Autoencoders
Generative Adversarial Networks (GAN)
4.4.3. Pros and Cons of Deep Learning Approaches
5. Discussion
Final Points
- This paper surveys methods and techniques tackling the detection of suspicious regions in mammograms. The narrative of this work is bottom-up, spanning low-level image feature-based approaches to deep learning architectures. The paper provides summaries of different approaches in tables. In Table 2, Table 3, Table 4 and Table 5, a thorough description of features, performed tasks, datasets, performances is given for the aforementioned methods. Most approaches tackle mass detection and classification, while others address mammogram enhancement, microcalcification detection, and mammogram image generation with unsupervised deep learning architectures. Missing rates on datasets do not allow comparing some methods’ performances. Both MIAS and DDSM datasets stand out in the tables because their employment is far higher than others.
- Machine learning methods are reliable on most datasets. A method based on textural and shape features and K-means [45] achieves sensitivity rates higher than 94% on both datasets; a technique [44] relying on local contour features, 1D signature contour subsection and SVM shows an accuracy rate of 99.6% on a subset of DDSM. Elmoufidi et al. [50] obtained 96% of accuracy on MIAS using a swarm optimisation algorithm for heuristic parameter selection. The method in [40] adopts morphological features for mass detection in mammograms and achieves 92% of sensitivity, but no performance metrics are given about false positives. Geostatistical and concave geometry (alpha shapes) features [52] allow achieving high detection rates on MIAS (97.30%) and DDSM (91.63%). An LBP (local binary pattern) based method [58] turns out to be quite reliable for mass classification in MIAS (99.65% sensitivity and 99.24% specificity). A morphological top-hat transform method [61] is successful in mass and microcalcification detection on MIAS with around 99% specificity and sensitivity rates (Table 2). As highlighted in the pros and cons sections, when low-level image feature descriptors feed into deep neural networks, as in the method by Utomo et al. [70], they can achieve remarkably well (100% specificity and sensitivity rates) on MIAS. The same is true for methods relying on BoF (Bag of Features) and SVM, meaning they are discriminative features for mass classification in mammograms (DDSM). Accuracy rates are achieved by Deshmuk and Bhosle [75] on MIAS (92.3% accuracy) and DDSM (96.8% accuracy) by using an optimised SURF descriptor.
- As listed in Table 4, machine learning methods show some remarkable differences with methods in Table 2 and Table 3. Clustering-based methods by Kamil et al. [101] and Ketabi et al. [102] cannot achieve accuracy rates higher than 94% on MIAS and 90% on DDSM. Sharma et al. [113] achieved high performances in mass detection and classification on IRMA (specificity 99% and sensitivity 99%) and DDSM (specificity 96% and sensitivity 97%) using SVM. The ANN method proposed by Mahersia et al. [98] achieved an average mass recognition rates of 97.08% on MIAS.
- Deep learning methods (Table 5) raise the bar, exploiting their inference knowledge capabilities on more than a single dataset. The autoencoder-based method by Taghanaki et al. [140] performed mammography classification with 98.45% accuracy on INBreast and IRMA. The methods of Selvathi et al. [138,139] scored around 99% accuracy on MIAS by leveraging stacked autencoders, and sparse autoencoder plus random forest.
- Bruno et al. [29] highlighted how convolutional neural networks’ performance could be affected with noise and bias embedded with training dataset images. The availability of larger sized datasets might fully unleash the inference knowledge capabilities of deep learning architectures. Furthermore, it would enable a training-from-scratch process for neural networks. Further comparisons could be then carried out with pre-existing DL models that are fine-tuned over a limited sized mammogram dataset using transfer learning. It is necessary to highlight that most deep learning methods in the biomedical imaging field currently adopt the above-mentioned pipeline laying on data augmentation plus transfer learning, due to the lack of publicly available and manually annotated datasets.
6. Conclusions
- (1)
- Shape-based, texture-based and local keypoint descriptors are the most common techniques used to extract low-level image features from mammograms;
- (2)
- Machine learning approaches such as SVM, ANN, and various clustering techniques are also quite successful over various medical imaging tasks, especially to detect/classify abnormality from mammograms;
- (3)
- Both supervised and unsupervised DL approaches have proven to be best for various mammogram analysis tasks;
- (4)
- As listed in Table 1, researchers in the community of biomedical imaging ran experiments on different publicly available and commonly cited datasets such as SureMaPP, DDSM, INBreast, BCDR, IRMA, BancoWeb LAPIMO etc. Each dataset features images with several properties, due to different acquiring device properties.
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
CAD | Computer-Aided Diagnosis |
BI-RADS | Breast Imaging Reporting and Database System |
AI | Artificial Intelligence |
ML | Machine Learning |
DL | Deep Learning |
SVM | Support Vector Machine |
ANN | Artificial Neural Network |
CNN | Convolutional Neural Network |
SIFT | Scale Invariant Feature Transform |
SURF | Speed Up Robust Feature |
FCN | Fully Convolutional Network |
RCNNN | Region-Based Convolutional Neural Network |
GAN | Generative Adversarial Network |
MLO | Mediolateral Oblique |
CC | Craniocaudal |
ROI | Region of Interest |
kNN | k-Nearest Neighbour |
MC | Microcalcification |
MCL | Multiple Concentric Layers |
MRE | Mean Squared Reconstruction Error |
MSE | Mean Squared Error |
GLCM | Gray-Level Co-occurrence Matrix |
GLRLM | Gray-Level Run-Length Matrix |
LBP | Local Binary Patterns |
LQP | Local Quinary Patterns |
CLAHE | Contrast Limited Adaptive Histogram Equalization |
BRIEF | Binary Robust Independent Elementary Features |
SOM | Self Organising Maps |
GA | Genetic Algorithms |
PFCM | Possibilistic Fuzzy C-Means |
MIAS | Mammographic Image Analysis Society |
DDSM | Digital Database of Screening Mammography |
CBIS-DDSM | Curated Breast Imaging Subset-DDSM |
BCDR | Breast Cancer Digital Repository |
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Oza, P.; Sharma, P.; Patel, S.; Bruno, A. A Bottom-Up Review of Image Analysis Methods for Suspicious Region Detection in Mammograms. J. Imaging 2021, 7, 190. https://doi.org/10.3390/jimaging7090190
Oza P, Sharma P, Patel S, Bruno A. A Bottom-Up Review of Image Analysis Methods for Suspicious Region Detection in Mammograms. Journal of Imaging. 2021; 7(9):190. https://doi.org/10.3390/jimaging7090190
Chicago/Turabian StyleOza, Parita, Paawan Sharma, Samir Patel, and Alessandro Bruno. 2021. "A Bottom-Up Review of Image Analysis Methods for Suspicious Region Detection in Mammograms" Journal of Imaging 7, no. 9: 190. https://doi.org/10.3390/jimaging7090190
APA StyleOza, P., Sharma, P., Patel, S., & Bruno, A. (2021). A Bottom-Up Review of Image Analysis Methods for Suspicious Region Detection in Mammograms. Journal of Imaging, 7(9), 190. https://doi.org/10.3390/jimaging7090190