An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations
Abstract
:1. Introduction
2. Cloud Computing
2.1. Service Models of Cloud Computing
- Software as a Service (SaaS) [12] allows the use of the provider’s applications running on remote architectures. The applications are obtainable through client applications, such as a web browser or an Application Program Interface (API). Users cannot control or manage the beneath Cloud infrastructure components such as network, servers, operating systems, storage, or individual application capabilities, excluding determinate user-specific application configuration settings.
- Platform as a Service (PaaS) [13] enables users to develop in the Cloud environment the users’ applications created using libraries, services, and APIs compatible with the Cloud provider. Users cannot directly manage or control the infrastructure beneath the Cloud, including network, servers, operating systems, or storage, but retain the deployed applications and particular configuration settings for the application-hosting domain.
- Infrastructure as a Service (IaaS) [14] facilitates the user in provision processing, storage, networks, and other essential computing resources where the user can deploy and run the software, including operating systems and apps. Users cannot manage or control the beneath-Cloud infrastructure, whereas having control of the operating systems, storage, deployed applications, and limited control on some select networking components, e.g., host firewalls or bridges.
- Business Process as a Service (BPaaS) [15] exploits the Cloud to automate and drive down the costs of business processes carried out by organizations.
- Data as a Service (DaaS) [16] offers Cloud-based Big Data cleaning, filtering, and enrichment schemes to produce data sets suitable for predictive or prescriptive analyses.
- Connectivity as a Service (CaaS) [17] provides Voice-Over-IP (VOIP), video-conferencing, and Instant Messaging (IM) functions as Cloud-based subscription services for commercial institutions.
- Identity as a Service (IDaaS) [18] provides Cloud-based centralized authentication and Single-Sign-On (SSO) services on heterogeneous or federated Cloud schemes.
2.2. Deployment Models of Cloud Computing
- Public Cloud infrastructure is ideal for organizations needing quick access to computing resources without significant capital expenditure. Public Cloud infrastructure allows organizations to purchase virtualized computing services through the Internet. Since Public Cloud services are furnished as pay-per-use, no initial investments are required because new resources can be purchased when needed. Public Cloud services are ideal for healthcare organizations that cannot afford an investment in particular hardware and maintenance.
- Private Cloud infrastructure is intended for exclusive use by a single organization. The Private Cloud lets organizations complete control over how data are shared and stored, an optimal solution if security is the primary concern, e.g., in the healthcare domain, ensuring compliance with any ethical regulations and protecting the subject’s sensitive data. Additionally, the Private Cloud provides on-demand data availability, guaranteeing trustworthiness and support for mission-critical tasks.
- Hybrid Cloud infrastructure combines Public and Private Cloud infrastructures by allowing data and applications to be moved between them. Cloud infrastructures are unique entities linked by standardized or proprietary technologies, enabling the portability of data and applications. Hence, Hybrid Cloud provides a unique integrated environment combining locally Private and Public Cloud services. Healthcare organizations using Hybrid Cloud could enhance the standard of security. In this regard, data and services that do not affect sensitive information can be available through the Public Cloud. In contrast, sensitive information held in the Private Cloud are under the institution’s absolute control.
- Multicloud infrastructure handles several Cloud services by different providers, including organizations’ Private Cloud resources and private computational assets, to accomplish various requirements and demands in a single heterogeneous Cloud environment. Multicloud gives more flexibility regarding service and computational capabilities, improving performance and increasing resource availability and redundancy, letting organizations and final users to use all available resources efficiently.
- Federated Cloud infrastructure is a heterogeneous Cloud environment connecting diverse providers through a partnership mechanism, e.g., a standard policy to share, access, and control infrastructure and services. Federated Cloud commonly combines multiple Private and Public Clouds. Federation members remain independent in resource sharing and access control, comprising federated identity management. Thus, the Federated Cloud increases reliability and, simultaneously, the scaling up of resources.
- Intercloud is a general model of Cloud infrastructures that incorporates heterogeneous Clouds from various providers and typically includes non-cloud resources. Intercloud models may use the Federated Cloud standard as the basis for creating or implementing more specific but customized control and management functions.
3. Background
- Cloud BioLinux [19] provides a platform for developing bioinformatics infrastructures on the Cloud. Cloud BioLinux is a publicly accessible Virtual Machine (VM) to create on-demand frameworks for high-performance bioinformatics computing using Cloud architectures. Cloud BioLinux preconfigured command line and graphical software applications are available through the Amazon EC2 Cloud. Cloud BioLinux is distributed under the MIT Licence, including different Cloud BioLinux VMs, whereas source code and user guides are available at http://www.cloudbiolinux.org (accessed on 21 March 2023).
- Cloud4SNP [20] is a Cloud-based framework for the parallel preprocessing and statistical analysis of pharmacogenomics SNP DMET microarray data sets. Cloud4SNP extends the DMET-Analyzer [21] engine to be implemented as a Cloud Computing service through the Data Mining Cloud Framework [22]. Data Mining Cloud Framework is a software framework for creating and implementing knowledge discovery workflows on the Cloud [23]. Cloud4SNP performs massive statistical tests of SNPs relevance in case-control studies using the well-known Fisher test. Cloud4SNP exploits data parallelism and employs an optimized filtering technique to bypass the execution of ineffective Fisher tests by removing rows, e.g., probes with similar SNPs distributions.
- CloudBurst [24] is a parallel read-mapping algorithm optimized for mapping Next-Generation Sequence (NGS) data from several organisms, including homo sapiens, SNPs discovery, genotyping, and personal genomics. CloudBurst runs the short Read-Mapping Program (RMAP) linearly since running time decreases linearly with the number of reads mapped, reaching a linear speedup increasing the number of processors. These results are obtained by implementing Hadoop MapReduce [25] to parallelize execution using multiple computing nodes. In this way, CloudBurst improves performance by decreasing the running time to minutes for mapping millions of short reads to the human genome. CloudBurst is available as an open-source Java project for Amazon EC2 at https://sourceforge.net/projects/cloudburst-bio/ (accessed on 21 March 2023).
- CloudMan [26] is a Cloud manager that directs all of the steps required to create and control a complete data analysis environment on a Cloud infrastructure using a web browser. CloudMan provides an NGS analysis technique integrated with the Galaxy applications. CloudMan comes with a graphical interface to enable an easy access to Cloud Computing services. CloudMan is currently available for Amazon Web Services (AWS) Cloud infrastructure as part of the Galaxy Cloud [27] and CloudBioLinux [28].
- Crossbow [29] is a scalable, portable, and automatic Cloud service for identifying SNPs from high-coverage short-read resequencing data. Crossbow implements the MapReduce framework [25] distributed from Apache Hadoop. Alignment and variant calling in Crossbow are performed using the Bowtie [29] and SOAPsnp [30] software tools.
- Eoulsan [31] is a Cloud service implementing the Hadoop MapReduce approach devoted to HT sequencing RNA-seq data analysis. The Eoulsan differential analysis of transcript expression workflow comprises six steps: (i) quality control filtering; (ii) reads mapping; (iii) alignments filtering; (iv) transcript expression calculation. (v) normalization; (vi) detection of significant differential expression. Eoulsan is available as standalone, local cluster, or Cloud Computing on Amazon Elastic MapReduce (EMR).
- Eoulsan 2 [32] is the update of Eoulsan initially developed for analyzing RNA-seq data. Eoulsan 2 introduces the following updates to handling long-read RNA-seq and scRNA-seq data: (i) enhances the workflow manager; (ii) facilitates the development of new modules; (iii) expands its applications to long-read RNA-seq and scRNA-seq. Eoulsan 2 is implemented in Java, available only for Linux systems, and distributed under the LGPL and CeCILL-C licenses at http://outils.genomique.biologie.ens.fr/eoulsan/ (accessed on 21 March 2023). The source code and sample workflows are available on GitHub https://github.com/GenomicParisCentre/eoulsan (accessed on 21 March 2023).
- HealtheDataLab [33] is a Cloud Computing platform for analyzing Electronic Medical Records (EMRs) data with computing capability for analyzing Big Data. HealtheDataLab enables the building of statistical and machine learning models flexibly through the use of Amazon Web Services (AWS), allows for scalability and high-performance computing system, and complaints with the Health Insurance Portability and Accountability Act (HIPAA) standard. HealtheDataLab is available upon request made directly to Cerner Corporation.
- iMage Cloud [34] allows the analysis of medical images integrated with EMRs, enabling the sharing of images, EMRs, and merged images via the Internet. iMage uses Hybrid Cloud to deliver more convenient and secure services, allowing high-performance image processing and virtual applications to be delivered securely, conveniently, and efficiently. iMage provides a graphical user interface with which it is possible to share images after being combined with EMRs.
- PeakRanger [35] is a software package that resolves closely spaced peaks obtained from Chromatin Immunoprecipitation (ChIP) coupled with massively parallel short-read sequencing (seq) ChIP-seq datasets. PeakRanger provides high performance on extensive data sets by taking advantage of the MapReduce parallel environment. PeakRanger improves recognition of extremely closely-spaced peaks improving spatial accuracy in identifying the exact location of binding events and improving the run time by exploiting the parallel environment provided by a Cloud Computing architecture. PeakRanger is written in C++ and can be deployed on Linux, macOS, and Windows.
- STORMSeq (Scalable Tools for Open-source Read Mapping) [36] is a software pipeline for whole-genome and exome sequence data sets. STORMSeq is implemented as AWS Cloud service. STORMSeq presents an intuitive user interface for dealing with reading mapping and variant calling using genomic data.
- VAT (Variant Annotation Tool) [37] is a software package to annotate variants from multiple individual genomes at the transcript level and obtain descriptive statistics across genes and individuals. VAT visualizes different variants, integrating allele frequencies and genotype data, simplifying comparative analysis between distinct groups of individuals. VAT is implemented in C and PHP and it is available as a command-line tool or as a web application. Moreover, VAT can be run as a virtual machine in the AWS Cloud environment. VAT documentation and user guide are available at http://www.vat.gersteinlab.org (accessed on 21 March 2023).
4. Materials and Methods
5. Discussion
6. Tips to Effectively Use Cloud Computing in Healthcare
7. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
MC | Molecular Biology |
HT | High-throughput |
AWS | Amazon Web Services |
BPaaS | Business Process as a Service |
CaaS | Connectivity as a Service |
ChIP | Chromatin immunoprecipitation |
ChiPseq | Short read sequencing |
DaaS | Data as a Service |
DNA | DeoxyriboNucleic Acid |
EMR | Elastic MapReduce |
EMR | Hectronic medical record |
GPU | raphics processing units |
HIPAA | Health Insurance Portability and Accountability Act |
HPC | High-Performance Computing |
IaaS | Infrastructure as a Service |
IDaaS | Identity as a Service |
IT | Information Technology |
MPI | Message-Passing Interface |
NGS | Next-Generation Sequence |
PaaS | Platform as a Service |
RMAP | short read-mapping program |
RNA-seq | RNA sequence |
SaaS | Software as a Service |
scRNA-seq | Single-cell RNA-sequence |
SNP | Single Nucleotide Polymorphism |
STORMSeq | Scalable Tools for Open-source Read Mapping |
VAT | Variant Annotation Tool |
VM | Virtual machines |
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DM | CP | S | AS | AP | ToJ | HS | C | EU | T |
---|---|---|---|---|---|---|---|---|---|
Public | √ | × | √ | × | sj | × | × | × | × |
Private | √ | √ | √ | × | cj | × | √ | √ | √ |
Federate | × | √ | √ | × | cj | √ | √ | √ | √ |
Hybrid | × | × | × | √ | gj | √ | √ | × | × |
Multicloud | √ | × | √ | × | gj | √ | √ | × | × |
Intercloud | × | √ | × | × | gj | √ | √ | √ | √ |
QueryID | Query | Publication Years Range |
---|---|---|
cloud computing & healthcare | 2009–2022 | |
cloud computing & healthcare & security | 2009–2022 | |
cloud computing & healthcare & challenges | 2009–2022 | |
cloud computing & healthcare & applications | 2009–2022 |
QueryID | TotManuscripts | TotFreeFullText |
---|---|---|
668 | 408 | |
237 | 151 | |
184 | 120 | |
273 | 186 |
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© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
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Agapito, G.; Cannataro, M. An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations. Big Data Cogn. Comput. 2023, 7, 68. https://doi.org/10.3390/bdcc7020068
Agapito G, Cannataro M. An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations. Big Data and Cognitive Computing. 2023; 7(2):68. https://doi.org/10.3390/bdcc7020068
Chicago/Turabian StyleAgapito, Giuseppe, and Mario Cannataro. 2023. "An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations" Big Data and Cognitive Computing 7, no. 2: 68. https://doi.org/10.3390/bdcc7020068
APA StyleAgapito, G., & Cannataro, M. (2023). An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations. Big Data and Cognitive Computing, 7(2), 68. https://doi.org/10.3390/bdcc7020068