Next Article in Journal
A Data-Driven Approach to Improve Cocoa Crop Establishment in Colombia: Insights and Agricultural Practice Recommendations from an Ensemble Machine Learning Model
Previous Article in Journal
The Use of Soybean–Corn Strip Compound Planting Implements in the Yellow River Basin of China for Intercropping Patterns in Areas of Similar Dimensions
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Modeling Seed Longevity and Percentile Prediction: A Sigmoidal Function Approach in Soybean, Maize, and Tomato

by
Felipe Souza Carvalho
1,*,
Brunna Rithielly Rezende
1,
Amanda Rithieli Pereira dos Santos
2 and
Maria Márcia Pereira Sartori
1
1
Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu 18618687, SP, Brazil
2
Department of Agricultural Engineering, Federal Institute of Education, Science, and Technology of Goiás, Urutaí 75790000, GO, Brazil
*
Author to whom correspondence should be addressed.
AgriEngineering 2025, 7(1), 5; https://doi.org/10.3390/agriengineering7010005
Submission received: 4 November 2024 / Revised: 6 December 2024 / Accepted: 26 December 2024 / Published: 28 December 2024
(This article belongs to the Section Pre and Post-Harvest Engineering in Agriculture)

Abstract

:
This study aims to evaluate the behavior of seed longevity in soybean, maize, and tomato stored under controlled conditions using Logistic and Boltzmann sigmoidal models. Additionally, it seeks to determine the performance of these models in predicting P 50 , P 85 , and P 25 . The models were fitted to the experimental longevity data, and their performance in predicting the percentiles was evaluated. The Logistic model showed better performance in predicting P 50 (time for viability to drop to 50%), P 85 (time for viability to drop to 85%), and P 25 (time for viability to drop to 25%), estimating the parameters more frequently within the experimental range (obtained from the initial viability data). The results of this study suggest that some cultivars exhibited different patterns in deterioration rates, with some showing abrupt declines in viability, highlighting differences in the speed and nature of seed deterioration. The Logistic model proved to be superior, with an accuracy of 83% in estimating the P 85 and P 25 percentiles, while the Boltzmann model achieved an accuracy of 54%. The tomato cultivar Gaucho showed the greatest loss in germination, reaching P 25 quickly, while the soybean cultivar M 7119 IPRO and maize cultivar MAM06 maintained high germination for a longer period. These findings emphasize the importance of using viability percentiles to optimize storage practices, minimize economic losses, and prevent genetic erosion in conservation programs. Modeling seed longevity using sigmoidal models can significantly contribute to determining various viability percentiles, supporting storage practices and providing valuable insights for strategic decision-making in seed management, proving useful in both commercial and species conservation contexts.

1. Introduction

Soybean (Glycine max), maize (Zea mays), and tomato (Solanum lycopersicum) are crops of great economic importance in Brazil, with a significant impact on both domestic and international markets. Soybean is the world’s leading oilseed and Brazil’s most valuable agricultural product, accounting for approximately 40% of global production [1,2]. Maize plays a fundamental role in food production, animal nutrition, and the biofuel industry, being essential for food security and various industrial applications. Tomato, widely consumed in Brazil and worldwide, is a rich source of vitamins and antioxidants, contributing to a healthy diet [3]. Regardless of the crop, the physiological quality of seeds is crucial for the successful establishment of seedlings and optimal field performance [4]. Germination is one of the main indicators of seed quality, as it directly influences plant establishment, uniformity, and field distribution [5]. Brazilian legislation, through IN 42/2019 and IN 45/2013, sets minimum germination standards of 80% for soybean and tomato and 85% for maize to ensure the quality of seeds available on the market [6,7].
The production of high-quality seeds, as well as maintaining their quality during storage, is essential for achieving high agricultural productivity [4,8]. These aspects are intrinsically linked to seed longevity, which plays a fundamental role in preserving quality over time and ensuring the success of both commercial and conservation initiatives.
Orthodox seeds have the ability to remain viable for extended periods due to their high tolerance to desiccation. In this dry state, metabolic processes are significantly reduced without losing germination capacity for a considerable time. The desiccation tolerance mechanism is a multifactorial property closely related to seed longevity [9,10]. Longevity is a physiological quality parameter defined by the time required for viability to be reduced to sigma during storage [11]. In other words, longevity represents the period during which the seed remains viable under dry storage conditions [5,12,13].
As storage progresses, seeds gradually undergo a deterioration process and loss of vigor, eventually leading to germination failure [14]. The dynamics of germination capacity loss during storage typically follow a sigmoidal pattern. In some populations, this process starts with little to no germination loss, followed by a phase where mortality sharply increases, causing a significant decline in the curve [15,16].
One of the widely used models to describe seed mortality during storage is the linear model proposed by Ellis and Roberts (1980) [15], which predicts the influence of environmental variables on seed longevity. However, this model has limitations as it assumes a normal distribution of mortality over time and a common deterioration rate for seed lots stored under identical conditions [17]. Additionally, for seed lots that initially experience limited deterioration, maintaining high germination percentages for an extended period, the model may produce inaccurate predictions at the extremes of the curve due to the difficulty of linear functions to accurately capture the natural behavior of the data in these ranges [16].
According to Yin (2003) [18], the sigmoidal pattern can be represented in a segmented manner using exponential, linear, and convex models. However, a more effective approach to describing the sigmoidal pattern is by using curvilinear models, such as sigmoidal ones, which allow for a smooth transition between different phases.
Sigmoidal models have been widely used to describe growth curves, such as plant height, weight, leaf area index, fertilizer and herbicide application rates, and even seed germination over time [19]. These models are notable for their ability to describe a wide range of mean functions, capturing complex and dynamic behaviors in the data, such as exponential growth and decay, in a simplified manner, with fewer parameters, making interpretation easier. Exploring this aspect, Cantão et al. (2023) [20] developed POMONA, a software that uses sigmoidal models for predicting and analyzing seed longevity. The software allows data input, automatically calculates parameters such as P 50 , and graphically demonstrates the modeling, providing a practical and efficient tool for researchers and professionals.
P 50 , one of the parameters calculated by the software, represents the storage or aging period in which germination drops to 50% during storage. This parameter is traditionally used to determine seed longevity. Thus, P 50 prediction models are important tools for providing insights into germplasm bank management and seed physiology [20,21,22,23]. Although P 50 is the most commonly used, predicting other percentiles ( P x ) can also be a valuable tool for monitoring the loss of germination capacity during storage.
In the standards for germplasm banks for plant genetic resources for food and agriculture, the Food and Agriculture Organization (FAO) (2014) [24] sets guidelines to avoid genetic erosion and excessive viability loss, which could compromise accession renewal and efficient labor management, as well as prevent the excessive consumption of biological material since the analyses are destructive. The use of viability prediction models is recommended to determine the time required for sample viability to drop to 85% ( P 85 ). Based on this, it is established that new monitoring of the accession should be conducted at one-third of the predicted time, considering a reasonable safety margin to reduce the chances of loss.
Furthermore, the use of other percentiles can be valuable in a commercial context, as they can also optimize seed use in quality control analyses, improve resource management, and support Logistical decision-making. Seed lots with initial stability that take longer to reach P 85 can be allocated for later shipment or directed to meet strategic demands. On the other hand, seed lots that lose their initial viability more quickly may be prioritized for shipment, as they are more likely to lose vigor over time.
Thus, the objective of this study is to evaluate the applicability and suitability of the Logistic and Boltzmann sigmoidal models in describing seed longevity for agriculturally important species such as soybean, maize, and tomato, which exhibit distinct physiological characteristics. This study aims to compare the performance of these models in predicting key percentiles of viability loss ( P 50 , P 85 , and P 25 ) and to determine whether they can capture common patterns of seed deterioration despite the differences in storage behavior among the analyzed species. By focusing on widely cultivated crops, this research seeks to provide a broader understanding of the model’s robustness and generalizability.

2. Materials and Methods

2.1. Biological Material

This study utilized seeds from three species of significant agronomic importance: soybean (Glycine max L.), tomato (Solanum lycopersicum L.), and maize (Zea mays L.). For soybean, five commercial cultivars were selected: BRS 6979 IPRO, 7677 RSF IPRO, M7119 IPRO, 8579 RSF IPRO, and 8473 RSF RR. Two tomato cultivars—LA1509 and LA1511—were provided by the Tomato Genetics Resource Center (TGRC, https://tgrc.ucdavis.edu/), while the commercial cultivar Gaucho was sourced from the market. The LA cultivars were cultivated following the methodology described by Batista et al. [25]. For maize, four cultivars were selected: MAM03, MAM06, MAM07, and MAM08. The physiological quality of these seeds was characterized based on their water content, germination, and longevity.

2.2. Water Content

The water content was determined using two replicates of 10 seeds each, which were placed in an oven at 105 ± 3 °C for 24 h.

2.3. Germination

For germination, the roll towel method was used, with the paper towels moistened with distilled water in an amount equivalent to 2.5 times the weight of the dry paper. Four replicates of 50 seeds each were used, and the rolls were kept at a constant temperature of 25 °C in the dark. The percentage of normal seedlings (with complete, proportional, and healthy essential structures) was determined as described by ISTA (2020) [26].

2.4. Longevity

Longevity was assessed by exposing the seeds to a controlled environment with a constant temperature of 35 °C and 75% relative humidity [12] using hermetically sealed boxes containing a supersaturated NaCl solution. The seeds were evaluated at time intervals according to the germination methodology previously described. The experimental P 50 was calculated to determine the time at which 50% of the seeds lost viability during storage.

2.5. Statistical Methodology

Figure 1 illustrates the main procedures for obtaining and analyzing the data. The longevity data obtained were first subjected to the Kolmogorov–Smirnov normality test. Subsequently, non-linear regression models were fitted to evaluate the performance and parameters of the models in predicting P 50 . The Boltzmann and Logistic models were analyzed over the time interval x = 0 to x = m, where x represents time and m varies depending on the cultivar and species analyzed. The Boltzmann model can be defined by the equation:
y = A 2 + ( A 1 A 2 ) 1 + e ( x x 0 ) d x
where
  • A 1   = initial frequency;
  • A 2 = final frequency;
  • x = time at moment i ;
  • x 0 = time at which the frequency is 50%;
  • d x = time constant;
  • e = base of the natural logarithm.
The Logistic model is defined by:
y = A 2 + ( A 1 A 2 ) 1 + ( x x 0 p )
where
  • p = is a parameter controlling the slope of the curve.

2.6. Fitting Longevity Predictors

Model fit was determined using the standard deviation of residuals (SDR) as a parameter:
S R D = M S R ( n p )
where
  • M S R = the mean square of residuals;
  • n = number of observations;
  • p = number of model parameters.
Additionally, the adjusted coefficient of determination was used, defined as:
R a d j 2 = 1 ( 1 R 2 ) ( n 1 ) ( n p )
where
R 2 = 1 S S R   S S T
  • S S R = is the sum of squares of the regression;
  • S S T = is the total sum of squares.
Furthermore, specific parameters for each cultivar, such as initial viability, total longevity, and the interval in days containing the experimental P 50 (interval of interest), were analyzed.

2.7. Percentile Estimation

To estimate the P 85 and P 25 percentiles from the data distribution, algebraic operations were performed using the fundamental equations, allowing these percentiles to be calculated from the equation of the statistical model fitted to the longevity data. For this, the variable x was isolated in the Boltzmann and Logistic models. For the Boltzmann model, the equation was defined as:
x = x 0 + d x l n 2   ( A 1 + A 2 y ) y
For the Logistic model, the equation was defined as:
x = x 0 ( A 1 A 2 ) ( y A 2 ) ( 1 p )
where x is the time at which the frequency equals the P 85 and P 25 percentiles of the distribution. For each percentile studied, an interval of interest (II) was defined based on the initial viability data to assess whether the estimated P x values fell within the interval of interest. Moreover, for each model, the number of times the percentile estimates fell within or outside the interval of interest was computed and subsequently subjected to the chi-square test with p < 0.05. All analyses were performed using OriginPro software, version 2024b (OriginLab Corporation, Northampton, MA, USA).

3. Results

The decline in viability over time during storage at a constant temperature of 35 °C and 75% relative humidity is presented in Figure 2, Figure 3 and Figure 4 for soybean, tomato, and maize seeds, respectively.
The longevity of freshly harvested seeds generally exhibits high viability rates. According to Brazilian legislation, the minimum required value must be equal to or greater than 80% for the species under study (Table 1). However, an exception was observed for samples from two tomato cultivars, with 66% and 74% viability. The total longevity ranged from 55 to 161 days (Table 1), and it is noteworthy that tomato cultivars Gaucho and LA1509, which had lower initial viability, were the least long-lived, with a total longevity of only 55 days for both.
The P 50 values obtained from the fitting of the Logistic and Boltzmann models, along with their confidence intervals and ranges of interest, as well as the adjusted determination coefficients, are presented in Table 2.
The maize cultivars MAM06 and MAM07 exhibited the highest P 50 values for both the Logistic and Boltzmann models and also had the longest total longevity among the crops studied (Table 1 and Table 2). On the other hand, the lowest P 50 for the models was observed for tomato cultivar Gaucho, which was also the shortest-lived and had the lowest initial viability among the cultivars analyzed.
Overall, the models estimated P 50 within the experimental confidence interval. However, it is important to note that for tomato cultivars Gaucho and LA1509, as well as maize cultivar MAM06, both the Logistic and Boltzmann models estimated P 50 values outside the range of experimental interest, though within the confidence limit.
For most cultivars, both the Logistic and Boltzmann models showed similarly adjusted determination coefficients and provided adequate fits with adjusted R2 values greater than 0.7, demonstrating the robustness of both models for estimating seed survival. However, tomato cultivar LA1509 had the lowest fit, with an adjusted R2 of 0.87 (Table 2), which was also reflected in the largest discrepancy between the P 50 values estimated by the two models, with a difference of more than 14 days between the estimates (Table 2).
Figure 5, Figure 6 and Figure 7 show the graphical fitting of the Logistic and Boltzmann models to seed longevity during storage at a constant temperature and relative humidity of 35 °C and 75%. It can be observed that there are no great distinctions between the curves of the models for species longevity, which supports the satisfactory values of the adjusted determination coefficients and the similar P 50 estimates between the models, indicating the adequate fit of the sigmoid functions under study to the experimental data.
Percentile Estimation
The performance of the models in predicting seed longevity percentiles of P 85 (15% decrease in viability during storage) and P 25 (75% decrease in viability during storage), using the algebraic method and their respective intervals of interest for each cultivar, are presented in Table 3 and Table 4. The direct calculation performed by the Logistic model achieved an accuracy of 83%, estimating the percentiles within the experimental range of interest more frequently compared to the Boltzmann model. On the other hand, the Boltzmann model had an accuracy of 54% in estimating the percentiles within the experimental range of interest (Table 3).
The maize cultivar MAM03 stood out for showing the fastest reduction in germination by 15% during storage under experimental conditions (the shortest experimental range of interest), as evidenced in the P 85 estimate using the direct calculation method for the Logistic model. It is noteworthy that this model was the only one to estimate the parameter within the experimental range of interest for this cultivar (Table 4).
Conversely, the cultivars that maintained germination above 85% for the longest time were the soybean cultivar M 7119 IPRO (Figure 4 and Table 4) and the maize cultivar MAM06 (Figure 7 and Table 4). However, for the MAM06 estimates, neither of the studied models’ estimated P 85 within the experimental range of interest.
It is also important to note that P 85 was not experimentally reached for the tomato cultivars Gaucho and LA1509. The crop that most rapidly lost 75% germination ( P 25 ) was the tomato cultivar Gaucho, both within the experimental range of interest and for the P 25 estimate using the Logistic model (Table 4). The Boltzmann model did not estimate P 25 within the experimental range of interest for this cultivar.
An analysis of the model performance by percentile is detailed in Table 5. Notably, the Logistic model demonstrated superior accuracy in estimating most percentiles within the experimental range of interest, with an error of only 8% for P 85 and 25% for P 25 . In contrast, the Boltzmann sigmoid model exhibited an approximately 50% error in estimates for both percentiles under study.
These results clearly indicate the poor performance of the Boltzmann model in estimating both P 85 and P 25 using the algebraic method (Table 5) and through the chi-square test (Table 6), which showed that the chosen model leads to differences in percentile estimation, with the Logistic function being the best predictor of these parameters (p-value < 0.05) compared to the Boltzmann model.

4. Discussion

Seed longevity, the time during which seeds remain viable and vigorous after reaching physiological maturity, is a crucial physiological attribute essential for both species conservation and commercial factors. Over time, the loss of vigor and viability can lead to significant economic losses by reducing the period during which seed lots remain marketable, as evidenced in Figure 2, Figure 3 and Figure 4, which illustrate the decline in seed longevity during storage time. In addition to time, seed longevity can be influenced by several factors, including the seed’s chemical composition, maturation stage, initial viability, genetic traits inherent to the genetic material, and, most notably, environmental conditions such as temperature and moisture content, which play a pivotal role in determining seed longevity [12,27]. Even under similar storage conditions and initial viability, longevity can vary, as shown in Table 1, reflecting different rates of deterioration over time (Figure 2, Figure 3 and Figure 4). Similar results have also been observed in soybean [23,28], maize [17], tomato [29], rice [30], and other 18 agricultural species [31]. Therefore, understanding the dynamics of this attribute is crucial for maximizing efficiency in production, commercialization, and species conservation.
The estimation of seed longevity using mathematical models is valuable for seed management during storage. If accurate, the determination of this index can serve as a basis for commercial Logistics, conservation strategies, and cost reduction [11].
The P 50 is the primary parameter observed in seed longevity studies, representing the time point at which 50% of the initial viability is lost. However, the analysis of other percentiles, such as P 85 and P 25 , can also be useful tools, as evaluated in this research. These additional percentiles allow for a more detailed assessment of seed deterioration over time under storage conditions, thereby optimizing seed use in analyses, improving quality assessments and resource management, and better identifying longevity patterns that are crucial for conservation and storage Logistics [30,32].
As observed in Table 2, the experimental intervals of interest for the cultivars 7677 RSF IPRO, 8579 RSF IPRO, and 8473 RSF RR are similar, as are their initial viability and total longevity (Table 1). The P 50 values for these cultivars are also close (Table 2). However, as shown in Figure 4 and the P 85 results (Table 4), it is evident that although similar, cultivars 8579 RSF IPRO and 8473 RSF RR took longer to reach P 85 compared to cultivar 7677 RSF IPRO, indicating that the rate of deterioration differs between cultivars, information that is not traditionally measured.
Additionally, analyzing other percentiles alongside the graphs showing the fitted curves from the sigmoidal longevity models reveals how rapid the decline in longevity can be in certain accessions, such as the cultivars M 7119 IPRO, 8579 RSF IPRO, MAM06, and MAM07. These cultivars display a similar behavior, where viability remains high for a longer period ( P 85 ranging from 43 to 60 days). However, the decline is abrupt, especially when considering the evolution of the experimental interval of interest and the P 50 and P 25 values that overlap. This can lead to economic losses and, in species conservation, significant genetic erosion due to the excessive and sudden loss of viability, compromising the renewal of accessions if not properly managed.
It is also worth mentioning that using other percentiles can be relevant in a commercial context, as it may optimize seed use in analyses, therefore reducing the number of tests needed in internal quality control and consuming fewer samples, improving human resource management, and supporting Logistical decision-making. Seed lots with initial stability that take longer to reach P 85 can be reserved for later dispatch or allocated to meet specific strategic demands. In contrast, lots with a faster decline in initial viability may be prioritized for delivery, as they tend to lose vigor more quickly over time.
A study conducted by Guzzon et al. [33] on maize seed longevity over 60 years highlights the critical impact of such viability losses. The study found that nearly half of the 1000 accessions analyzed required regeneration, as their viability fell below the P 85 threshold in active chambers (−3 °C; intended for seed distribution), while 14% of the same accessions stored in base chambers (−15 °C; for long-term conservation) also required regeneration.
Under constant storage conditions, the seed viability curve demonstrates a sigmoidal shape [34]. However, Roberts (1972) [35] suggests that the asymmetry caused by the linear increase in the logarithm of the relative death chance over time does not reflect the conditions reported in many experiments, where viability curves are symmetrical, conforming to a cumulative normal distribution. That is, when seeds are stored under constant conditions, most individuals have a viability period randomly distributed around the mean, resulting in a symmetrical pattern, justifying the use of the Probit function and other linear functions. Nevertheless, nonlinear models, such as sigmoidal ones, can be employed due to their ability to represent the biological behavior of longevity loss over time, highlighting patterns such as the initial decline in viability, which is gradual at first, followed by a phase of rapid decay, and eventually stabilizing as most seeds become non-viable, accurately reflecting the biological reality of the process.
Nonlinear sigmoidal models, such as the Boltzmann and Logistic models, are traditionally used to describe biological data. This popularity is partly due to their high plasticity in fitting observed data and the availability of accessible software that enables modeling these data without requiring an in-depth statistical understanding of the involved parameters capturing complex and dynamic behaviors in the data, such as exponential growth and decay, in a simplified manner, with fewer parameters, making interpretation easier [36,37,38].

5. Conclusions

The analysis of viability percentiles ( P 85 , P 50 , and P 25 ) provides valuable insights for strategic decision-making in seed management, proving useful in both commercial and species conservation contexts. The results of this study suggest that sigmoidal models, particularly the Logistic model, are highly effective in capturing the natural patterns of seed deterioration and estimating longevity percentiles for agriculturally important species such as soybean, maize, and tomato. Despite their distinct physiological and storage characteristics, the models proved robust and adaptable, supporting their generalizability across diverse crops.
However, some limitations must be acknowledged. The study utilized a limited number of tomato seed lots, and their suboptimal germination quality may have influenced the accuracy of the models for this species. Addressing these limitations could form the basis for future research, such as expanding the analysis to include a greater number of tomato seed lots or exploring additional species and varying qualities to further validate and refine the models’ applicability.

Author Contributions

Conceptualization, F.S.C. and B.R.R.; methodology, F.S.C.; software, F.S.C.; formal analysis, F.S.C.; Supervision, M.M.P.S., A.R.P.d.S. and B.R.R. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—(CAPES), grant number 88887.902181/2023-00.

Data Availability Statement

The data presented in this study are available on request from the corresponding author due to privacy reasons.

Conflicts of Interest

The authors declare no conflicts of interest.

References

  1. VBP Brasil—Outubro/2024; VBP—2024—Principais Produtos Agropecuários—Brasi; Ministério da Agricultura e Pecuária: Brasília, Brasil, 2024.
  2. Global Olive Oil Production Forecast to Rebound in 2024/25; Oilseeds: World Markets and Trade; United States Department of Agriculture Foreign Agricultural Service: Washington, DC, USA, 2024.
  3. Mauro, R.P.; Rizzo, V.; Leonardi, C.; Mazzaglia, A.; Muratore, G.; Distefano, M.; Sabatino, L.; Giuffrida, F. Influence of Harvest Stage and Rootstock Genotype on Compositional and Sensory Profile of the Elongated Tomato Cv. “Sir Elyan”. Agriculture 2020, 10, 82. [Google Scholar] [CrossRef]
  4. Finch-Savage, W.E.; Bassel, G.W. Seed Vigour and Crop Establishment: Extending Performance beyond Adaptation. J. Exp. Bot. 2016, 67, 567–591. [Google Scholar] [CrossRef] [PubMed]
  5. Pirredda, M.; Fañanás-Pueyo, I.; Oñate-Sánchez, L.; Mira, S. Seed Longevity and Ageing: A Review on Physiological and Genetic Factors with an Emphasis on Hormonal Regulation. Plants 2023, 13, 41. [Google Scholar] [CrossRef] [PubMed]
  6. Ministry of Agriculture Normative Instruction No. 45; 2013.
  7. Ministry of Agriculture Normative Instruction No. 42; 2019.
  8. Rao, P.J.M.; Pallavi, M.; Bharathi, Y.; Priya, P.B.; Sujatha, P.; Prabhavathi, K. Insights into Mechanisms of Seed Longevity in Soybean: A Review. Front. Plant Sci. 2023, 14, 1206318. [Google Scholar] [CrossRef] [PubMed]
  9. Bruggink, G.T.; Ooms, J.J.J.; Van Der Toorn, P. Induction of Longevity in Primed Seeds. Seed Sci. Res. 1999, 9, 49–53. [Google Scholar] [CrossRef]
  10. Rajjou, L.; Debeaujon, I. Seed Longevity: Survival and Maintenance of High Germination Ability of Dry Seeds. C. R. Biol. 2008, 331, 796–805. [Google Scholar] [CrossRef]
  11. De Faria, R.Q.; Dos Santos, A.R.P.; Amorim, D.J.; Cantão, R.F.; Da Silva, E.A.A.; Sartori, M.M.P. Probit or Logit? Which Is the Better Model to Predict the Longevity of Seeds? Seed Sci. Res. 2020, 30, 49–58. [Google Scholar] [CrossRef]
  12. Pereira Lima, J.J.; Buitink, J.; Lalanne, D.; Rossi, R.F.; Pelletier, S.; Da Silva, E.A.A.; Leprince, O. Molecular Characterization of the Acquisition of Longevity during Seed Maturation in Soybean. PLoS ONE 2017, 12, e0180282. [Google Scholar] [CrossRef]
  13. Nadarajan, J.; Walters, C.; Pritchard, H.W.; Ballesteros, D.; Colville, L. Seed Longevity—The Evolution of Knowledge and a Conceptual Framework. Plants 2023, 12, 471. [Google Scholar] [CrossRef] [PubMed]
  14. Nguyen, T.-P.; Cueff, G.; Hegedus, D.D.; Rajjou, L.; Bentsink, L. A Role for Seed Storage Proteins in Arabidopsis Seed Longevity. J. Exp. Bot. 2015, 66, 6399–6413. [Google Scholar] [CrossRef] [PubMed]
  15. Ellis, R.H.; Roberts, E.H. Improved Equations for the Prediction of Seed Longevity. Ann. Bot. 1980, 45, 13–30. [Google Scholar] [CrossRef]
  16. Bernal-Lugo, I.; Leopold, A.C. The Dynamics of Seed Mortality. J. Exp. Bot. 1998, 49, 1455–1461. [Google Scholar] [CrossRef]
  17. Tang, S.; TeKrony, D.M.; Egli, D.B.; Cornelius, P.L. An Alternative Model to Predict Corn Seed Deterioration during Storage. Crop Sci. 2000, 40, 463–470. [Google Scholar] [CrossRef]
  18. Yin, X. A Flexible Sigmoid Function of Determinate Growth. Ann. Bot. 2003, 91, 361–371. [Google Scholar] [CrossRef] [PubMed]
  19. Archontoulis, S.V.; Miguez, F.E. Nonlinear Regression Models and Applications in Agricultural Research. Agron. J. 2015, 107, 786–798. [Google Scholar] [CrossRef]
  20. Cantão, R.F.; Ribeiro-Oliveira, J.P.; Silva, E.A.A.D.; Santos, A.R.D.; De Faria, R.Q.; Sartori, M.M.P. POMONA: A Multiplatform Software for Modeling Seed Physiology. Front. Plant Sci. 2023, 14, 1151911. [Google Scholar] [CrossRef]
  21. Redden, R.; Partington, D. Gene Bank Scheduling of Seed Regeneration: Interim Report on a Long Term Storage Study. J. Integr. Agric. 2019, 18, 1529–1540. [Google Scholar] [CrossRef]
  22. Probert, R.J.; Daws, M.I.; Hay, F.R. Ecological Correlates of Ex Situ Seed Longevity: A Comparative Study on 195 Species. Ann. Bot. 2009, 104, 57–69. [Google Scholar] [CrossRef] [PubMed]
  23. Batista, T.B.; Perissato, S.M.; Rego, C.H.Q.; Oliveira, G.R.F.D.; Henning, F.A.; Silva, E.A.A.D. Is It Possible to Estimate Longevity through the Analyses Used to Measure the Initial Physiological Potential in Soybean Seeds? J. Seed Sci. 2021, 43, e202143024. [Google Scholar] [CrossRef]
  24. Genebank Standards for Plant Genetic Resources for Food and Agriculture, Revised ed.; Food and Agriculture Organization of the United Nations: Rome, Italy, 2016; ISBN 978-92-5-109528-7.
  25. Barbosa Batista, T.; Javier Fernandez, G.; Alexandre Da Silva, T.; Maia, J.; Amaral Da Silva, E.A. Transcriptome Analysis in Osmo-Primed Tomato Seeds with Enhanced Longevity by Heat Shock Treatment. AoB Plants 2020, 12, plaa041. [Google Scholar] [CrossRef] [PubMed]
  26. Chapter 5: The Germination Test; International Seed Testing Association: Zurich, Switzerland, 2024; Volume 2024, pp. 1–66. [CrossRef]
  27. Bewley, J.D.; Bradford, K.J.; Hilhorst, H.W.M.; Nonogaki, H. Seeds: Physiology of Development, Germination and Dormancy, 3rd ed.; Springer: New York, NY, USA, 2013; ISBN 978-1-4614-4692-7. [Google Scholar]
  28. Dos Santos, A.R.P.; De Faria, R.Q.; Amorim, D.J.; Giandoni, V.C.R.; Da Silva, E.A.A.; Sartori, M.M.P. Cauchy, Cauchy–Santos–Sartori–Faria, Logit, and Probit Functions for Estimating Seed Longevity in Soybean. Agron. J. 2019, 111, 2929–2939. [Google Scholar] [CrossRef]
  29. Guadalupe, G.M.; Raúl, A.-C.; Javier, L.C.; Lorena, D.; Aline, S.-T. Longevity of Preserved Solanum lycopersicum L. Seeds: Physicochemical Characteristics. Physiol. Mol. Biol. Plants 2022, 28, 505–516. [Google Scholar] [CrossRef]
  30. Lee, J.-S.; Velasco-Punzalan, M.; Pacleb, M.; Valdez, R.; Kretzschmar, T.; McNally, K.L.; Ismail, A.M.; Cruz, P.C.S.; Sackville Hamilton, N.R.; Hay, F.R. Variation in Seed Longevity among Diverse Indica Rice Varieties. Ann. Bot. 2019, 124, 447–460. [Google Scholar] [CrossRef] [PubMed]
  31. Nagel, M.; Börner, A. The Longevity of Crop Seeds Stored under Ambient Conditions. Seed Sci. Res. 2010, 20, 1–12. [Google Scholar] [CrossRef]
  32. Hay, F.R.; Valdez, R.; Lee, J.-S.; Sta. Cruz, P.C. Seed Longevity Phenotyping: Recommendations on Research Methodology. J. Exp. Bot. 2018, 70, 425–434. [Google Scholar] [CrossRef]
  33. Guzzon, F.; Gianella, M.; Velazquez Juarez, J.A.; Sanchez Cano, C.; Costich, D.E. Seed Longevity of Maize Conserved under Germplasm Bank Conditions for up to 60 Years. Ann. Bot. 2021, 127, 775–785. [Google Scholar] [CrossRef]
  34. Gane, R. The Effect of Temperature, Humidity and Atmosphere on the Viability of Chewing’s Fescue Grass Seed in Storage. J. Agric. Sci. 1948, 38, 90–92. [Google Scholar] [CrossRef]
  35. Roberts, E.H. Storage Environment and the Control of Viability. In Viability of Seeds; Roberts, E.H., Ed.; Springer: Dordrecht, The Netherlands, 1972; pp. 14–58. ISBN 978-94-009-5687-2. [Google Scholar]
  36. Davidian, M.; Giltinan, D.M. Some General Estimation Methods for Nonlinear Mixed-Effects Model. J. Biopharm. Stat. 1993, 3, 23–55. [Google Scholar] [CrossRef]
  37. Li, G.; Majumdar, D. D-Optimal Designs for Logistic Models with Three and Four Parameters. J. Stat. Plan. Inference 2008, 138, 1950–1959. [Google Scholar] [CrossRef]
  38. Sevcik, C. Caveat on the Boltzmann Distribution Function Use in Biology. Prog. Biophys. Mol. Biol. 2017, 127, 33–42. [Google Scholar] [CrossRef] [PubMed]
Figure 1. Flowchart of the main steps of the experimental process for seed longevity modeling. n: sample size; r: replicate or replication; ss: sub-sample, plot, or experimental unit.
Figure 1. Flowchart of the main steps of the experimental process for seed longevity modeling. n: sample size; r: replicate or replication; ss: sub-sample, plot, or experimental unit.
Agriengineering 07 00005 g001
Figure 2. Variation in the percentage of protrusion in soybean cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Soybean cultivars tested include (A) BRS 6979 IPRO, (B) 7677 RFS IPRO, (C) M 7119 IPRO, (D) 8579 RSF IPRO, and (E) 8473 RSF RR.
Figure 2. Variation in the percentage of protrusion in soybean cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Soybean cultivars tested include (A) BRS 6979 IPRO, (B) 7677 RFS IPRO, (C) M 7119 IPRO, (D) 8579 RSF IPRO, and (E) 8473 RSF RR.
Agriengineering 07 00005 g002
Figure 3. Variation in the percentage of protrusion in tomato cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Tomato cultivars tested include (A) Gaucho, (B) LA1509, and (C) LA1511.
Figure 3. Variation in the percentage of protrusion in tomato cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Tomato cultivars tested include (A) Gaucho, (B) LA1509, and (C) LA1511.
Agriengineering 07 00005 g003
Figure 4. Variation in the percentage of protrusion in corn cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Corn cultivars tested include (A) 2B587RR, (B) MAM06, (C) MAM07, and (D) MAM08.
Figure 4. Variation in the percentage of protrusion in corn cultivars during storage at a constant temperature of 35 °C and 75% relative humidity (RH). Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. Corn cultivars tested include (A) 2B587RR, (B) MAM06, (C) MAM07, and (D) MAM08.
Agriengineering 07 00005 g004
Figure 5. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of soybean seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Soybean cultivars tested include (A) BRS 6979 IPRO, (B) 7677 RFS IPRO, (C) M 7119 IPRO, (D) 8579 RSF IPRO, and (E) 8473 RSF RR.
Figure 5. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of soybean seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Soybean cultivars tested include (A) BRS 6979 IPRO, (B) 7677 RFS IPRO, (C) M 7119 IPRO, (D) 8579 RSF IPRO, and (E) 8473 RSF RR.
Agriengineering 07 00005 g005
Figure 6. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of tomato seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Tomato cultivars tested include (A) Gaucho, (B) LA1509, and (C) LA1511.
Figure 6. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of tomato seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Tomato cultivars tested include (A) Gaucho, (B) LA1509, and (C) LA1511.
Agriengineering 07 00005 g006
Figure 7. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of corn seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Corn cultivars tested include (A) 2B587RR, (B) MAM06, (C) MAM07, and (D) MAM08.
Figure 7. Curves fitted by the Logistic and Boltzmann sigmoid models to the longevity of corn seeds stored at a constant temperature of 35 °C and 75% humidity. Each data point represents the observed percentage of protrusion for an individual replicate of 200 seeds per cultivar. The red line indicates the Logistic model, while the blue line represents the Boltzmann model fitted to the observed data. Corn cultivars tested include (A) 2B587RR, (B) MAM06, (C) MAM07, and (D) MAM08.
Agriengineering 07 00005 g007
Table 1. Parameters for evaluating viability over time (days).
Table 1. Parameters for evaluating viability over time (days).
SpeciesCultivarInitial Viability (%)Total Longevity (Days)
SoybeanBRS 6979 IPRO9883
7677 RSF IPRO9883
M 7119 IPRO9970
8579 RSF IPRO9870
8473 RSF RR10070
TomatoGaucho6655
LA15097455
LA15119797
MaizeMAM038891
MAM0690154
MAM0792161
MAM089584
Table 2. Seed longevity of soybean, tomato, and maize over time (days) estimated by sigmoid models.
Table 2. Seed longevity of soybean, tomato, and maize over time (days) estimated by sigmoid models.
SpeciesCultivarModelRange of InterestUL ≤ P50 ≥ LLP50R² Aj.
SoybeanBRS 6979 IPROLogistic34–49[37.33; 37.28]37.310.99
Boltzmann[37.81; 36.56]37.190.98
7677 RSF IPROLogistic49–58[61.63; 55.14]58.380.96
Boltzmann[56.43; 53.76]55.090.97
M 7119 IPROLogistic58–70[65.09; 63.89]64.490.99
Boltzmann[65.28; 64.12]64.700.99
8579 RSF IPROLogistic49–58[54.24; 53.59]53.920.99
Boltzmann[54.41; 53.77]54.090.99
8473RSF RRLogistic49–58[57.41; 56.74]57.070.98
Boltzmann[57.51; 56.82]57.160.98
TomatoGauchoLogistic15–20[24.39; 21.67]23.03 *0.91
Boltzmann[24.04; 21.38]22.71 *0.91
LA1509Logistic10–20[55.69; 19.29]37.49 *0.87
Boltzmann[27.84; 18.34]23.09 *0.87
LA1511Logistic27–35[33.33; 31.61]32.470.94
Boltzmann[33.47; 31.81]32.640.94
MaizeMAM03Logistic35–42[38.52; 35.14]36.830.93
Boltzmann[37.43; 33.68]35.560.93
MAM06Logistic63–77[88.23; 81.72]84.97 *0.93
Boltzmann[88.41; 81.85]85.13 *0.93
MAM07Logistic63–77[75.30; 70.65]72.970.93
Boltzmann[74.72; 70.21]72.460.93
MAM08Logistic56–71[60.65; 56.46]58.550.96
Boltzmann[60.07; 56.24]58.150.96
* Indicates parameter estimates outside the range of experimental interest (II).
Table 3. Model performance in predicting the percentiles of seed longevity curves stored at 35 °C and 75% relative humidity, concerning the range of interest.
Table 3. Model performance in predicting the percentiles of seed longevity curves stored at 35 °C and 75% relative humidity, concerning the range of interest.
ModelError (%)Precision (%)
Logistic 1783
Boltzmann4654
Table 4. P25 and P85 estimates of seed longevity of soybean, tomato, and maize over time (days), calculated using the algebraic method.
Table 4. P25 and P85 estimates of seed longevity of soybean, tomato, and maize over time (days), calculated using the algebraic method.
SpeciesCultivarModelP85P25
Range of Interest (II)21–3434–49
SoybeanBRS 6979 IPROLogistic27.8544.06
Boltzmann39.07 *48.86
II21345870
7677 RSF IPROLogistic31.6981.49 *
Boltzmann57.43 *74.34 *
II58705870
M 7119 IPROLogistic60.0066.94
Boltzmann65.2769.17
II49584958
8579 RSF IPROLogistic49.2256.62
Boltzmann54.6858.70 *
II49585870
8473RSF RRLogistic53.0060.04
Boltzmann57.8161.25
II-2027
TomatoGauchoLogistic17.0426.44
Boltzmann20.3829.55 *
II-3555
LA1509Logistic9.3334.64 *
Boltzmann35.8139.75
II27353569
LA1511Logistic27.0039.16
Boltzmann33.4738.86
II7214249
MaizeMAM03Logistic14.8044.54
Boltzmann36.49 *43.55
II6377112154
MAM06Logistic50.43 *104.78 *
Boltzmann87.41 *96.60 *
II42497791
MAM07Logistic43.9787.02
Boltzmann73.09 *82.82
II28427084
MAM08Logistic29.5172.63
Boltzmann59.68 *66.81 *
* Indicates parameter estimate outside the experimental range of interest (II).
Table 5. Model performance by percentile in predicting the longevity of seeds stored at 35 °C and 75% relative humidity.
Table 5. Model performance by percentile in predicting the longevity of seeds stored at 35 °C and 75% relative humidity.
ModelParameterError (%)Precision (%)
LogisticP85892
Boltzmann5050
LogisticP252575
Boltzmann4258
Table 6. Chi-square test results (p-value) for the frequency of P25 and P85 estimated by the Logistic and Boltzmann models within the range of interest (II).
Table 6. Chi-square test results (p-value) for the frequency of P25 and P85 estimated by the Logistic and Boltzmann models within the range of interest (II).
Boltzmann
Logistic0.1258
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

Carvalho, F.S.; Rezende, B.R.; Santos, A.R.P.d.; Sartori, M.M.P. Modeling Seed Longevity and Percentile Prediction: A Sigmoidal Function Approach in Soybean, Maize, and Tomato. AgriEngineering 2025, 7, 5. https://doi.org/10.3390/agriengineering7010005

AMA Style

Carvalho FS, Rezende BR, Santos ARPd, Sartori MMP. Modeling Seed Longevity and Percentile Prediction: A Sigmoidal Function Approach in Soybean, Maize, and Tomato. AgriEngineering. 2025; 7(1):5. https://doi.org/10.3390/agriengineering7010005

Chicago/Turabian Style

Carvalho, Felipe Souza, Brunna Rithielly Rezende, Amanda Rithieli Pereira dos Santos, and Maria Márcia Pereira Sartori. 2025. "Modeling Seed Longevity and Percentile Prediction: A Sigmoidal Function Approach in Soybean, Maize, and Tomato" AgriEngineering 7, no. 1: 5. https://doi.org/10.3390/agriengineering7010005

APA Style

Carvalho, F. S., Rezende, B. R., Santos, A. R. P. d., & Sartori, M. M. P. (2025). Modeling Seed Longevity and Percentile Prediction: A Sigmoidal Function Approach in Soybean, Maize, and Tomato. AgriEngineering, 7(1), 5. https://doi.org/10.3390/agriengineering7010005

Article Metrics

Back to TopTop