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Article

Characterizing the Properties of Anion-Binding Bis(cyclopeptides) with Solvent-Independent Energy Increments

Fachbereich Chemie—Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Str. 54, 67663 Kaiserslautern, Germany
Chemistry 2022, 4(2), 419-430; https://doi.org/10.3390/chemistry4020031
Submission received: 24 April 2022 / Revised: 8 May 2022 / Accepted: 9 May 2022 / Published: 12 May 2022
(This article belongs to the Special Issue Supramolecular Anion Recognition: Principles and Applications)

Abstract

:
The binding energies of 121 complexes between anions and bis(cyclopeptides) differing in the structure and the number of linking units between the two cyclopeptide rings were analyzed. These Gibbs free energies were obtained in earlier work for different anions, under different conditions, and with different methods. The multiparametric analysis of a subset of 42 binding energies afforded linear relationships that allowed the relatively reliable estimation of the iodide and sulfate affinity of three structurally related bis(cyclopeptides) in water/methanol and water/acetonitrile mixtures at different solvent compositions. Three parameters were required to achieve a satisfactory correlation, namely, the Gibbs free energy of transferring the respective anion from water into the solvent mixture in which complex stability was determined, and the Kamlet–Taft parameters α and β. Based on these relationships, the anion affinities of the other bis(cyclopeptides) were evaluated, giving rise to a set of energy increments that allow quantifying the effects of the linker structure or the nature of the anion on binding affinity relative to the reference system.

Graphical Abstract

1. Introduction

The stability of a complex between two binding partners reflects the interplay of several factors, each of which adds an individual energy contribution to the overall Gibbs free energy of complex formation ΔG° [1,2]. The ΔG° of a complex in solution can be expressed, for example, as the sum of ΔG°i, characterizing the intrinsic stability in the gas phase, the free desolvation energies of the individual complex constituents, and the free solvation energy of the complex [3]. This breakdown shows that, if the Gibbs free energies required to desolvate the binding partners in a specific solvent cannot be overcompensated by the sum of the ΔG° terms associated with the formation of the complex in the gas phase and its subsequent solvation, the overall ΔG° will be positive and the complex will not form. ΔG°i itself represents the sum of the energy contributions associated with the attractive and repulsive interactions within the complex, the possible strain in the binding partners arising during complex formation, and other factors.
Separately quantifying these contributions affords energy increments that allow the comparison and classification of noncovalent interactions [2]. Several methods exist for this purpose, one of which involves performing trend analyses in which the structure of a binding partner is systematically changed, for example by gradually increasing the number of functional groups with which the substrate interacts and quantifying the influence of this structural change on complex stability. An early application of this method by Schneider afforded an increment for the energetic contribution of salt bridges to molecular recognition processes [4,5,6], and similar analyses have subsequently been performed to characterize other types of interactions [2]. Interaction energies can also be estimated by using molecular balances [7,8], as demonstrated by the groups of Wilcox [9], Diederich [10], Cockroft [11], and Shimizu [12], or double-mutant cycles, which have been used extensively by Hunter and coworkers [13].
Linear free energy relationships are also useful to analyze solvent effects on binding processes by correlating binding strength with the various parameters available to characterize solvent properties [14]. Two recent examples from the field of anion recognition [15,16,17] came in this respect from the groups of Sindelar and Johnson [18,19]. Sindelar demonstrated that the halide affinity of a neutral bambus[6]uril correlates with the Swain acidity parameter A of the solvent in which complex formation was investigated [18], and Johnson showed that the chloride affinity of a bis(arylethynyl phenylurea) host in eight different solvents correlates with the solvents’ ET(30) values [19].
The anion affinities of bis(cyclopeptides) 1a and 1b (Figure 1) for iodide and sulfate in various different solvents and aqueous solvent mixtures were analyzed in a similar manner [20,21]. These bis(cyclopeptides) belong to a family of anion receptors developed in the author’s group that contain two cyclic hexapeptide moieties with alternating proline and 6-aminopicolinic acid subunits connected covalently via one or more linkers [22]. Each cyclopeptide ring orients the NH groups toward a shallow cavity surrounded by the proline rings. The two receptor subunits can interdigitate, thus creating a cavity in which the anion is included and where it interacts with six converging NH groups. These complexes even form in highly competitive aqueous solvent mixtures and, in the cases of 1a and 1b, even in water [23]. Anion affinity depends on the structure of the linker [24,25,26,27,28,29] and the number of linking units between the two rings [28,29,30].
In the cases of 1a and 1b, a statistical analysis of the ΔG° values determined under different conditions revealed [21] that anion affinity can be estimated by using a simple linear relationship (Equation (1)) in which the Gibbs free energy required to transfer the anion from water into the respective solvent mixture Δtr and the Kamlet–Taft parameter α that describes the solvent’s ability to donate hydrogen bonds appear as the only variables:
ΔG°exp = g ΔG°tr + a α
Since only the two structurally related bis(cyclopeptides) 1a and 1b were considered in this analysis, the effects of receptor structure on the binding affinity were captured in the coefficients g and a, of which a is formally an energy term. Other bis(cyclopeptides) can therefore be expected to yield different values for g and a. Alternatively, 1a and 1b can be regarded as a reference system to which the effects of the linker structure or the nature of the anion on complex stability can be related by including an additional Gibbs free energy contribution into Equation (1) that refers to the linker structure (ΔG°L) or the anion (ΔG°A) (Equation (2)):
ΔG°exp = g ΔG°tr + a α + ΔG°A or L
If this relationship is valid, it should be possible to calculate ΔG°L by comparing the experimental ΔG°exp of a given bis(cyclopeptide)–anion complex with the ΔG° value estimated by using the constants g and a of the reference system and the terms ΔG°tr and α that are characteristic for the anion and the solvent in which ΔG°exp was determined. Conversely, comparing the stabilities of the complexes of different anions with the same bis(cyclopeptide) should yield ΔG°A. Importantly, since the sum g ΔG°tr + a α already encodes for the influence of the solvent on the complex stability, the increments ΔG°L and ΔG°A should be independent of the conditions under which the complex is formed.
In the following, it is shown that this treatment is indeed possible, yielding relatively consistent values of ΔG°L and ΔG°A for the bis(cyclopeptides) developed to date. While the thus determined energies only provide information about the extent to which changing the linker structure, the number of linkers, or the nature of the anion affects complex stability relative to the reference system, they can still be regarded as energy increments characteristic for the family of anion receptors for which they were determined.

2. Materials and Methods

The calculations described in this work were based on the results of previously described binding studies [20,21,24,25,26,27,28,29,30]. The Gibbs free energies considered in these calculations are collected in Table S1 of the Supplementary Materials and in the Excel file that is also available. The solvent parameters ET(30), α, β, and π* used to characterize the influence of the solvent on anion affinity are available in the literature [31]. The values were fitted to appropriate polynomials in the range of water/methanol, water/acetonitrile, and water/DMSO mixtures for which they are reported by using the program proFit 7.0.19 (Quansoft). In a similar manner, the reported Gibbs free energies of transferring anions from water into solvent mixtures were also fitted and matched to the experimental conditions [32,33]. The graphs describing the solvent parameters and transfer energies are shown in Table S2. The solvent parameters and transfer energies corresponding to the conditions of the binding studies were calculated based on the coefficients of the fitted polynomials in Excel. The multiparametric analyses were also conducted in Excel by using the implemented data analysis tool. The results are summarized and graphically depicted in the corresponding spreadsheet. Further graphs illustrating how well the calculated energy values match the experimental ones for different combinations of parameters are shown in Table S3. A summary table in the Excel file displays the results of all calculations and allows checking how the variation of the determined coefficients affects the resulting energy increments.

3. Results

The structures of the bis(cyclopeptides) whose anion affinity was quantified in previous work are shown in Figure 1. Compounds 1al represent singly linked bis(cyclopeptides) that were either synthesized by reacting the corresponding cyclopeptide monoamine with a dicarboxylic acid [20,21,24,26,27,29], by connecting a cyclopeptide with an azide group with an analog containing a terminal alkyne in the presence of a copper(I) catalyst [28], or under the conditions of disulfide exchange [25,30]. The doubly linked bis(cyclopeptides) 2j and 2k and triply linked receptors 3d and 3h were prepared analogously to the corresponding singly linked derivatives. The binding constants that are available for these bis(cyclopeptides) were either determined by NMR titrations or isothermal titration calorimetry. As substrates, mostly sulfate and the halides iodide, bromide, and chloride were used, and in one case nitrate affinity was also quantified. These measurements were performed in water, water/methanol, water/acetonitrile, and water/DMSO mixtures containing different fractions of the organic solvent so that a total of 121 binding constants could be used in this study. These binding constants and the corresponding free energies of complex formation ΔG°exp are collected in Table S1 of the Supplementary Materials.
The choice of the reference system was based on the number of independent binding constants available for each receptor. Considering that the solubilizing substituents in the cyclopeptide and linker subunits of 1a and 1b did not markedly affect anion affinity with respect to the unsubstituted bis(cyclopeptide) 1c [20], 60 binding constants were available for 1ac, of which 25 belonged to sulfate complexes and 35 to iodide complexes. Since none of the other bis(cyclopeptides) was characterized at a similar level of detail, bis(cyclopeptides) 1ac were chosen as reference receptors.
With 60 binding constants, the dataset used for the statistical analysis was larger than that previously considered [21]. Moreover, the binding constants in the two subsets were analyzed simultaneously in this study, independent of the solvent in which the measurements were performed, while the earlier calculations involved analyzing the binding constants for pure solvents, water/methanol, water/acetonitrile, and water/DMSO mixtures separately. Because of the different approach chosen here, the validity of Equation (1) was reassessed by testing whether additionally considering the other Kamlet–Taft parameters β (hydrogen bond acceptance ability) and π* (polarizability) as variables, replacing α with another parameter, or using Reichardt’s ET(30) values to describe the solvent properties would improve the correlation.
For the analysis, the dimensionless solvent parameters α, β, π*, and ET(30) first had to be matched to the experimental conditions of the respective binding study. To this end, the reported values for water/methanol, water/acetonitrile, and water/DMSO mixtures [31] were fitted to polynomials with degrees between two and seven, depending on the quality of the fit. The equations thus obtained (see Supplementary Materials) allowed the estimation of α, β, π*, and ET(30) for each measurement after converting the solvent compositions that were previously mostly specified in terms of vol% to mol%. In a similar manner, the Gibbs free energies of transfer ΔG°tr were also calculated. The values for the transfer of the halides from water into water/methanol or water/acetonitrile mixtures could be taken from the literature for mixtures between 0 and 100 mol% of water [33]. Transfer energies for sulfate from water into water/DMSO have also been reported across the whole range of solvent compositions [32], but those of sulfate and nitrate for water/acetonitrile mixtures are not available, while they are reported for water/methanol mixtures only between 0 and 40 mol% of the organic component. Of the 121 binding constants included into Table S1, 24 could therefore not be further considered, reducing the dataset to overall 97 binding constants. Note that the calculation of ΔG°tr for sulfate in water/methanol mixtures in four cases involved extrapolation to a solvent composition not reliably described by the reported ΔG°tr values. However, since the solvent compositions of these measurements differed not too strongly from the ones for which ΔG°tr values are still known, the respective binding constants were retained. All solvent parameters and ΔG°tr values determined in this way are included in Table S1.
Based on these results, multiparametric analyses were performed to determine the coefficients in linear relationships that best allow predicting the stabilities of the iodide and sulfate complexes of 1ac. In this context, it turned out that including the binding constants of the iodide and sulfate complexes of 1a and 1b in water/DMSO mixtures and of the iodide complexes of 1a in neat organic solvents in the calculations caused a pronounced reduction in the goodness of fit. These binding constants were therefore removed from the dataset, reducing the total number of binding constants of iodide complexes to 29 and of sulfate complexes to 13. Table 1 summarizes the coefficients obtained for this set of binding constants when fitting the experimental values of ΔG°exp to g ΔG°tr and six different combinations of solvent parameters. In this table, the entries in each line denote the solvent parameter(s) used in the respective calculation, with g, e, a, b, and p corresponding to the coefficients in the general equation ΔG°exp = g ΔG°tr + e ET(30) + a α + b β + p π*. Note that all coefficients except g formally represent energy terms.
Table 1 shows that combining ΔG°tr with ET(30) did not afford a satisfactory correlation. Using the Kamlet–Taft parameters for the statistical analysis consistently led to good fits. The correlation did not significantly suffer when excluding π*, but additionally excluding β caused a significant drop of R2. The fit was satisfactory, however, when only considering β. Moreover, this fit did not substantially improve when additionally considering π*. The fits of the linear correlations obtained for the calculations in which ΔG°tr was used together with α and β, only with α, and only with β are illustrated graphically in Figure 2.
In the case of the sulfate complexes, all calculations in which Kamlet–Taft parameters were considered had very good fits, with β alone again affording a better fit than α alone (Table 2). The respective graphs are depicted in the Supplementary Materials.
Note that the coefficients g and a in entries 4 of Table 1 and Table 2 are similar to those determined in the earlier study [33] and that some calculations afforded comparable coefficients for the iodide and the sulfate complexes (e.g., g and a in entries 4, or g and b in entries 5), indicating that the intrinsic affinity of bis(cyclopeptides) 1ac for both anions is likely similar.
These calculations thus showed that Equation (1) may not be optimal for estimating the experimental binding energies. The correlations were significantly better both for the iodide and the sulfate complexes of 1ac when additionally including β into the equation and neglecting α entirely did not even have a large impact on the goodness of fit. Accordingly, the calculation of ΔG°calcd for all the bis(cyclopeptide) complexes considered in this study was primarily based on Equation (3). In some cases, the effects of neglecting either a or β on the outcome of the calculations were additionally assessed.
ΔG°calcd = g ΔG°tr + a α + b β
In the next step, the consistency of the obtained results was evaluated by calculating the Gibbs free energies of the sulfate and iodide complexes of 1ac with the coefficients obtained in the multiparametric analyses and comparing them with the corresponding experimental free energies by calculating the difference ΔG°rel = ΔG°exp − (g ΔG°tr + a α + b β). When using the coefficients g, a, and b for the iodide complexes, the calculated Gibbs free energies matched the 29 experimental ones rather well, with only three calculated values deviating from the corresponding experimental ones by more than 2.5 kJ mol−1 (Figure 2a), resulting in a standard deviation of ±1.5 kJ mol−1 (Table 3). All calculated Gibbs free energies of the 13 sulfate complexes matched the experimental ones within an error margin of ±2.1 kJ mol−1 (standard deviation ± 0.9 kJ mol−1). When using the coefficients determined for the sulfate complex instead, the standard deviation of the experimental and calculated Gibbs free energies of iodide complexation amounted to ±1.9 kJ mol−1, with five calculated values differing from the experimental ones by more than 2.5 kJ mol−1. The same coefficients allowed predicting the stabilities of the sulfate complexes very well, with a standard deviation of ±0.4 kJ mol−1. Thus, although the coefficients in entries 3 of Table 1 and Table 2 differ substantially, each combination provided relatively reliable estimates of the stabilities of the respective other complexes, with the coefficients obtained for the iodide complexes working somewhat better. Almost the same correlations were observed when omitting the term for α from Equation (3), again demonstrating that β is the more important solvent parameter to predict complex stability. The quality of the results was significantly lower when only considering α, although the coefficients g and a in entries 4 of Table 1 and Table 2 are comparable.
Having thus established that the coefficients obtained in the statistical analysis for the iodide and sulfate complexes of 1ac allow a relatively reliable prediction of complex stability for a wide variety of solvent mixtures, the calculations were extended to the anion complexes of the other bis(cyclopeptides). To this end, Gibbs free energies were calculated for each bis(cyclopeptide)–anion combination by using the coefficients g, a, and b in entries 3 of Table 1 and Table 2 and the values of ΔG°tr, α, and β corresponding to the conditions of the respective measurements. The results obtained were subtracted from the corresponding experimental Gibbs free energies of complex formation (ΔG°rel = ΔG°exp − ΔG°calcd) to assess the extent to which the experimental binding energies differ from those expected for iodide or sulfate complexes of a bis(cyclopeptides) 1ac under the same conditions. The ΔG°rel values calculated in this way are summarized in Table 3. If more than one binding constant was available for a specific bis(cyclopeptide)–anion combination, the values in the table represent averages of the specified number of binding constants.
Once values for ΔG°rel were available, the energy increments ΔG°A and ΔG°L could be calculated. ΔG°A describes the difference in binding energies resulting from exchanging the anion of the reference system for another anion. These increments can thus be calculated by subtracting the ΔG°rel value in Table 3 for a given bis(cyclopeptide)–anion pair from the ΔG°rel value of the iodide complex of the same bis(cyclopeptide). The ΔG°rel values calculated in this way are summarized in Table 4. Values in parentheses in this table were calculated by using the coefficients g, a, and b obtained for the sulfate complexes of bis(cyclopeptides) 1ac.
While the results should be most reliable for the bis(cyclopeptides) for which the statistical analysis was performed, the other bis(cyclopeptides) should afford comparable ΔG°rel values for a given anion. Table 4 shows that this is mostly the case, with a few exceptions. The absolute increments obtained for the sulfate complex of 1g and the chloride complex of 1f are larger than the respective other increments, for example. The averages of the entries in the columns of Table 4 nevertheless illustrate how the stability of a complex responds when iodide is exchanged for another anion. Positive increments indicate that the calculated Gibbs free energy of complex formation is more negative than the experimental one, and that the respective complex is therefore less stable than the reference system. Accordingly, the increments in Table 4 suggest that the iodide and sulfate complexes of the bis(cyclopeptides) are indeed intrinsically comparably stable. Bromide is bound less strongly than iodide or sulfate, and the least stable complexes are formed with chloride and nitrate.
The linker increments ΔG°L can be calculated in a similar manner by relating the ΔG°rel values of bis(cyclopeptides) 1ac with the corresponding values of the other bis(cyclopeptides). These increments are summarized in Table 5, in which rows are now expected to contain comparable values because the influence of the linker on the bis(cyclopeptide) complexes should be similar, independent of the anion (the ΔG°L value for the nitrate complex of 1d is missing because the stabilities of the nitrate complexes of 1ac are unknown). The comparison of the values in rows containing more than one entry shows that this is again mostly the case. The averages calculated for ΔG°L within a row thus allow estimating the effects of the linker on complex stability. Accordingly, the doubly linked bis(cyclopeptide) 2k has the intrinsically highest anion affinity, which is indeed the case [30], while the presence of three linkers in bis(cyclopeptides) 3e and 3i does not seem to be very beneficial.

4. Discussion

The multiparametric analyses of the binding energies of 29 iodide complexes and 13 sulfate complexes of bis(cyclopeptides) 1ac demonstrated that anion affinity can be predicted rather reliably on the basis of a few parameters in a wide range of solvent mixtures. The most important parameter is the Gibbs free energy ΔG°tr of transferring an anion from water into the respective solvent mixture. These transfer energies are mostly positive, while g is always negative, indicating that complex stability increases with the increasing energetic cost of transferring an anion into a solvent mixture. In other words, the less favorable the anion solvation in a solvent mixture in terms of the Gibbs free energy, the greater the energetic gain of complex formation. Interestingly, the multiparametric analyses afforded coefficients for ΔG°tr close to 1 in a few cases, suggesting that ΔG°tr contributes exactly once to anion binding. However, fixing the coefficient g to 1 mostly afforded unsatisfactory correlations, particularly when including the solvent parameter β in the analysis (data not shown), which is why g was also fitted.
Besides ΔG°tr, additional solvent parameters have to be considered in the linear correlation to predict binding strength. As observed earlier, the Kamlet–Taft parameters α, describing the hydrogen bond acidity of the solvent mixture, and β, relating to the corresponding basicity, afforded better correlations than Reichardt’s ET(30) parameter [21]. Moreover, including only α in the linear equation consistently yielded poorer correlations than additionally or even exclusively including β. This correlation differs from that found in previous work, where α was considered more important, which could have several reasons. A possible but probably not decisive one is the larger dataset used in this work. More important is likely that Gibbs free energies were included into the previous analysis that were obtained for iodide complexes in methanol, acetonitrile, and DMSO. These binding energies were not considered here because they consistently caused a reduction in the quality of the fit. The earlier work also contained binding energies for complex formation in water/DMSO mixtures, which turned out to be difficult to evaluate together with the results obtained in the other solvents. Possible reasons could be that ΔG°tr increases when going from water to water/DMSO mixtures but iodide affinity decreases, which is opposite to the trends in the other solvents. In addition, the transfer energies of sulfate into water/DMSO mixtures are comparably large, which causes small changes in the solvent composition to have large effects on the calculated binding energies [32]. As a consequence, calculations with coefficients obtained when considering the binding energies obtained in water/DMSO mixtures afforded increments with relatively large errors that were, however, comparable in magnitude to those in Table 4 and Table 5.
For the purpose of this work, the exact choice of parameters used to correlate the experimental and calculated binding energies is secondary, as long as a parameter combination exists that allows predicting binding strengths. The question is nevertheless justified, why α and especially β worked so well. Both the hydrogen bond donor and acceptor strength of the solvent should indeed affect anion binding since increasing the donor strength should improve anion solvation and increasing the acceptor strength should improve the solvation of the receptor donors that interact with the anion. Accordingly, one should expect anion binding to become stronger as the values of α and β decrease and the solvent becomes less competitive. The negative signs of most coefficients a and b in the entries 3, 4, and 5 of Table 1 and Table 2 demonstrate, however, that the opposite is generally the case (α and β are usually positive). The observed trends can therefore not be rationalized in a straightforward manner. In the previous work, the dependence on α was tentatively attributed to the contribution of the hydrophobic effect to anion binding since α is larger in water than in solvent mixtures [21]. The parameter β typically exhibits the opposite trend, mirroring to some extent the increase in complex stability with decreasing water content of the solution, but the transfer energies ΔG°tr are likely more important in this context. Accordingly, understanding the correlation of anion affinity with α and β requires further work.
Independent of this aspect, the calculations performed in this study afforded relatively consistent energy increments, describing the effects of changing the anion or the receptor structure on binding strength. One major drawback is that the dataset was too small to obtain statistically meaningful increments for all the bis(cyclopeptide)–anion combinations studied to date. The obtained increments nevertheless correctly reflect previously observed trends as illustrated by the selection of binding energies measured in water/methanol mixtures in Table 6.
The correlation between experimental and calculated ΔG°L is somewhat poorer for binding energies measured in water/acetonitrile mixtures as shown by the results in Table 7. In particular, the positive influence of the disulfide-containing linkers on complex stability is underestimated in the calculated increments, maybe because these linkers differ structurally too strongly from the amide-based ones in the other bis(cyclopeptides). That connecting the cyclopeptide rings with more than one linker is often beneficial is, however, correctly predicted by the ΔG°L values in Table 5.
The validation of the ΔG°A values for different anions has to be based on binding energies measured in water to eliminate the effect of the transfer energies that differ from anion to anion. The corresponding binding studies with 1a and 1b yielded experimental ΔG°A values for sulfate, bromide, and chloride complexation with respect to the stability of the iodide complex amounting to 1.7, 2.2 and 8.3 kJ mol−1, respectively, which match the corresponding calculated values of 0.6 (−0.5), 3.4 (2.9), and 8.5 (8.0) reasonably well. Accordingly, the correlation between experimental and calculated energy increments derived in this study is acceptable, especially when considering that only a limited number of binding constants was considered. Based on these increments, the effects of receptor structure and nature of the anion on complex stability in relation to the reference system can now be quantified.

5. Conclusions

The presented results support the idea that energy increments can be derived even from binding studies that have been performed under widely varying conditions and with different methods if a reference system is available whose binding properties can be predicted by using appropriately chosen parameters. The determined increments now permit quantifying structural effects in a series of bis(cyclopeptide)-based anion receptors on binding affinity and the dependence of affinity on the nature of the anion. Since the binding studies on which this analysis was based were originally not intended to serve for such an analysis, the quality of the data and, in turn, the precision of the calculated energy increments is not optimal. While it is possible to improve the accuracy by increasing the size of the dataset and more carefully choosing conditions that would allow a reliable statistical analysis, the more interesting question at this point is whether the approach can be extended to other receptors. Unfortunately, other studies in which binding properties of anion receptors were related to solvent properties [18,19] were performed in pure solvents or DMSO mixtures, that is, under conditions that were difficult to reliably treat with the mathematical approach used here. The solvent-dependence of the binding of a bambus[6]uril to chloride, bromide, and iodide nevertheless demonstrated that halide selectivity differed characteristically from solvent to solvent [18]. Binding was almost unselective in DMSO, for example, while it was pronounced in water. Accordingly, the intrinsic selectivity of the receptor was modulated by solvent effects, which were correlated in this case with Swain’s acidity parameter. However, it is conceivable that a treatment similar to the one described here might also allow the separation of the energy terms associated with the intrinsic receptor properties and the solvent effects. If this concept could indeed be extended to other systems, the ultimate goal would be to determine energy increments based on which the behavior of receptors from different receptor families could be compared.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/chemistry4020031/s1, Table S1: Overview of the dataset used for the analysis [20,21,24,25,27,28,29,30,34]; Table S2: Polynomial fits of transfer energies and solvent property parameters [31,33]; Table S3: Comparison of the experimental and calculated Gibbs free energies, Excel spreadsheet containing all data and results described in this work.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

No new data was generated in this work. The data analyzed is available in the cited references and the Supplementary Materials.

Acknowledgments

I thank all former coworkers for collecting the data on which the mathematical analysis described in this manuscript was based. Their names are mentioned in the references.

Conflicts of Interest

The author declares no conflict of interest.

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Figure 1. Structures of the bis(cyclopeptides) 1al, 2k,l, and 3e,i.
Figure 1. Structures of the bis(cyclopeptides) 1al, 2k,l, and 3e,i.
Chemistry 04 00031 g001
Figure 2. Correlation of the experimental and calculated Gibbs free energies of complex formation when using the linear relationships for estimating ΔG°calcd that included the coefficients for ΔG°tr, α, and β (a), ΔG°tr and α (b), and ΔG°tr and β (c).
Figure 2. Correlation of the experimental and calculated Gibbs free energies of complex formation when using the linear relationships for estimating ΔG°calcd that included the coefficients for ΔG°tr, α, and β (a), ΔG°tr and α (b), and ΔG°tr and β (c).
Chemistry 04 00031 g002
Table 1. Coefficients calculated by multiparametric analyses for the linear relationship ΔG°exp = g ΔG°tr + e ET(30) + a α + b β + p π* considering 29 iodide complexes of bis(cyclopeptides) 1ac. a The R2 parameter describes the goodness of fit of the linear relationship.
Table 1. Coefficients calculated by multiparametric analyses for the linear relationship ΔG°exp = g ΔG°tr + e ET(30) + a α + b β + p π* considering 29 iodide complexes of bis(cyclopeptides) 1ac. a The R2 parameter describes the goodness of fit of the linear relationship.
EntrygeabpR2
1−0.74−0.40 0.9424
2−0.65 −14.44−27.778.030.9976
3−0.62 −6.24−29.00 0.9967
4−1.19 −21.59 0.9862
5−0.42 −40.37 0.9950
6−0.50 −35.86−2.650.9954
a e, a, b, and p in kJ mol−1.
Table 2. Coefficients calculated by multiparametric analyses for the linear relationship ΔG°exp = g ΔG°tr + e ET(30) + a α + b β + p π* considering 13 sulfate complexes of bis(cyclopeptides) 1ac. a The R2 parameter describes the goodness of fit of the linear relationship.
Table 2. Coefficients calculated by multiparametric analyses for the linear relationship ΔG°exp = g ΔG°tr + e ET(30) + a α + b β + p π* considering 13 sulfate complexes of bis(cyclopeptides) 1ac. a The R2 parameter describes the goodness of fit of the linear relationship.
EntrygeabpR2
1−0.88−0.37 0.9288
2−1.19 50.2611.51−76.710.9998
3−0.47 0.30−41.64 0.9998
4−1.04 −18.81 0.9918
5−0.48 −41.00 0.9998
6−0.47 −41.920.440.9998
a e, a, b, and p in kJ mol−1.
Table 3. ΔG°rel values corresponding to the difference ΔG°exp − (g ΔG°tr + a α + b β) of all bis(cyclopeptide)–anion combinations considered in this study, using the coefficients g, a, and b derived for the iodide complexes of bis(cyclopeptides) 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
Table 3. ΔG°rel values corresponding to the difference ΔG°exp − (g ΔG°tr + a α + b β) of all bis(cyclopeptide)–anion combinations considered in this study, using the coefficients g, a, and b derived for the iodide complexes of bis(cyclopeptides) 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
IodideSulfateChlorideBromideNitrate
naΔG°rel bnΔG°relnΔG°relnΔG°relnΔG°rel
1ac290.0 ± 1.5
(0.5 ± 1.9)
130.6 ± 0.9
(0.0 ± 0.4)
28.6 ± 0.1
(8.5 ± 1.6)
23.4 ± 0.9
(3.4 ± 2.6)
1d74.6 ± 1.3
(6.5 ± 1.1)
24.5 ± 2.8
(4.8 ± 2.8)
212.5 ± 1.0
(14.2 ± 1.0)
26.7 ± 0.8
(8.5 ± 0.8)
114.9
(16.8)
1e19.8
(10.6)
3e11.6
(2.4)
1f13.4
(5.4)
14.1
(4.5)
117.2
(18.8)
18.3
(10.1)
1g15.6
(7.7)
12.8
(3.2)
19.8
(11.6)
1h110.9
(13.0)
111.1
(11.5)
1i 35.2 ± 0.2
(5.2 ± 0.2)
3i 30.7 ± 0.8
(0.8 ± 0.5)
1j,kc20.3 ± 1.2
(1.1 ± 1.2)
2k1−7.5
(−6.7)
1l6−0.4 ± 0.4
(0.4 ± 0.4)
2l1−2.0
(−1.2)
a n—number of independent measurements; b ΔG°rel in kJ mol−1; c the results for 1j and 1k were combined because of the structural similarity of these bis(cyclopeptides).
Table 4. ΔG°A values calculated by subtracting the ΔG°rel of a given bis(cyclopeptide)–anion complex from the ΔG°rel values of the iodide complex of the same bis(cyclopeptide), the latter of which were calculated by using the coefficients g, a, and b derived for the iodide complexes of bis(cyclopeptides) 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
Table 4. ΔG°A values calculated by subtracting the ΔG°rel of a given bis(cyclopeptide)–anion complex from the ΔG°rel values of the iodide complex of the same bis(cyclopeptide), the latter of which were calculated by using the coefficients g, a, and b derived for the iodide complexes of bis(cyclopeptides) 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
ΔG°A (Sulfate) aΔG°A (Chloride)ΔG°A (Bromide)ΔG°A (Nitrate)
1a–c0.6 (−0.5)8.5 (8.0)3.4 (2.9)
1d−0.2 (−1.6)7.9 (7.7)2.1 (2.0)10.3 (10.3)
1f0.7 (−0.9)13.8 (13.4)4.9 (4.7)
1g−2.8 (−4.4) 4.2 (4.0)
1h0.2 (−1.4)
Avg.−0.3 ± 1.3
(−1.8 ± 1.4)
10.1 ± 2.6
(9.7 ± 2.6)
3.6 ± 1.1
(3.4 ± 1.0)
10.3
(10.3)
a ΔG°A in kJ mol−1.
Table 5. ΔG°L values calculated by subtracting the ΔG°rel of a given bis(cyclopeptide)–anion complex from the ΔG°rel values of the complexes of 1ac with the same anion, the latter of which were calculated by using the coefficients g, a, and b derived for the iodide complexes of 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
Table 5. ΔG°L values calculated by subtracting the ΔG°rel of a given bis(cyclopeptide)–anion complex from the ΔG°rel values of the complexes of 1ac with the same anion, the latter of which were calculated by using the coefficients g, a, and b derived for the iodide complexes of 1ac. The results obtained when using the coefficients of the sulfate complexes are given in parentheses.
ΔG°L
(Iodide) a
ΔG°L
(Sulfate)
ΔG°L
(Chloride)
ΔG°L
(Bromide)
Avg.
1d4.6 (6.0)3.9 (4.8)4.0 (5.6)3.3 (5.1)3.9 ± 0.5 (5.4 ± 0.5)
1e9.8 (10.1) 9.8 (10.1)
3e1.6 (1.9) 1.6 (1.9)
1f3.4 (4.9)3.5 (4.5)8.6 (10.3)4.9 (6.7)5.1 ± 2.4 (6.6 ± 2.6)
1g5.6 (7.1)2.3 (3.2) 6.5 (8.2)4.8 ± 2.2 (6.2 ± 2.6)
1h10.9 (12.4)10.5 (11.5) 10.7 ± 0.3 (12.0 ± 0.7)
1i 4.6 (5.2) 4.6 (5.2)
3i 0.1 (0.8) 0.1 (0.8)
1j,k b0.3 (0.6) 0.3 (0.6)
2k−7.5 (−7.2) −7.5 (−7.2)
1l−0.4 (−0.1) −0.4 (−0.1)
2l−2.0 (−1.7) −2.0 (−1.7)
a ΔG°L in kJ mol−1; b the results for bis(cyclopeptides) 1j and 1k were combined because of the structural similarity of these compounds.
Table 6. Comparison of the experimental and estimated ΔG°L values for the sulfate, iodide, bromide, and chloride complexes of receptors 1d, 1f, and 1g in water/methanol, 1:1 (v/v) [26]. All ΔG°L refer to the binding energies of 1c that were measured under the same conditions. The ΔG°L values calculated from the coefficients of the sulfate complexes are given in parentheses.
Table 6. Comparison of the experimental and estimated ΔG°L values for the sulfate, iodide, bromide, and chloride complexes of receptors 1d, 1f, and 1g in water/methanol, 1:1 (v/v) [26]. All ΔG°L refer to the binding energies of 1c that were measured under the same conditions. The ΔG°L values calculated from the coefficients of the sulfate complexes are given in parentheses.
1c1d1f1g
ΔG°exp aΔG°expΔG°LΔG°expΔG°LΔG°expΔG°L
SO42−−34.1−30.23.9−29.24.9−30.33.9
I−25.2−21.63.6−22.72.5−20.64.6
Br−22.9−19.73.2−19.03.9−17.35.6
Cl−19.3−14.25.1−10.68.7
Avg. 4.0 ± 0.8 5.0 ± 2.7 4.7 ± 0.9
Calcd. 3.9 ± 0.5 (5.4 ± 0.5) 5.1 ± 2.4 (6.6 ± 2.6) 4.8 ± 2.2 (6.2 ± 2.6)
a ΔG°exp and ΔG°L in kJ mol−1.
Table 7. Comparison of the experimental and estimated ΔG°L values for the sulfate and iodide complexes of receptors 1d, 1j, and 1l in water/acetonitrile, 1:2 (v/v) [26,29]. All ΔG°L refer to the binding energies of 1c that were measured under the same conditions. The ΔG°L values calculated from the coefficients of the sulfate complexes are given in parentheses.
Table 7. Comparison of the experimental and estimated ΔG°L values for the sulfate and iodide complexes of receptors 1d, 1j, and 1l in water/acetonitrile, 1:2 (v/v) [26,29]. All ΔG°L refer to the binding energies of 1c that were measured under the same conditions. The ΔG°L values calculated from the coefficients of the sulfate complexes are given in parentheses.
1c1d1e1j1l
ΔG°exp aΔG°expΔG°LΔG°expΔG°LΔG°expΔG°LΔG°expΔG°L
SO42−−32.8−30.22.6−24.68.2−38.4−5.6−39.0−6.2
I−23.1−20.03.1−17.16.0−25.4−2.3−27.1−4.0
Avg. 2.9 ± 0.4 7.1 ± 1.6 −4.0 ± 2.3 −5.1 ± 1.6
Calcd. 3.9 ± 0.5
(5.4 ± 0.5)
9.8
(10.1)
0.3
(0.6)
−0.4
(−0.1)
a ΔG°exp and ΔG°L in kJ mol−1.
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Kubik, S. Characterizing the Properties of Anion-Binding Bis(cyclopeptides) with Solvent-Independent Energy Increments. Chemistry 2022, 4, 419-430. https://doi.org/10.3390/chemistry4020031

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Kubik S. Characterizing the Properties of Anion-Binding Bis(cyclopeptides) with Solvent-Independent Energy Increments. Chemistry. 2022; 4(2):419-430. https://doi.org/10.3390/chemistry4020031

Chicago/Turabian Style

Kubik, Stefan. 2022. "Characterizing the Properties of Anion-Binding Bis(cyclopeptides) with Solvent-Independent Energy Increments" Chemistry 4, no. 2: 419-430. https://doi.org/10.3390/chemistry4020031

APA Style

Kubik, S. (2022). Characterizing the Properties of Anion-Binding Bis(cyclopeptides) with Solvent-Independent Energy Increments. Chemistry, 4(2), 419-430. https://doi.org/10.3390/chemistry4020031

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