3. Materials and Methods
General Methods. Unless otherwise stated, solvents were evaporated at 40 °C/2 kPa and prepared compounds were dried at 30 °C at 2 kPa. Reaction flasks were heated in aluminum heating blocks. Tetrahydrofuran, dioxane, and acetonitrile were dried by activated neutral alumina (Drysphere). Dimethylformamide was dried by activated molecular sieves (3 Å). Other dry solvents were purchased from commercial suppliers. Analytical TLC was performed on silica gel pre-coated aluminum plates with the fluorescent indicator Merck 60 F254 (Sigma-Aldrich, Prague, Czech Republic). Flash column chromatography was carried out by Teledyne ISCO CombiFlash Rf200 with a dual absorbance detector (Teledyne ISCO, Lincoln, NE, USA). HRMS spectra (ESI
+ or EI
+) were recorded on LTQ Orbitrap XL spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) with the ESI or EI ionization method. NMR spectra were recorded on Bruker (Rheinstetten, Germany) Avance III (400 MHz or 500 MHz) spectrometers and referenced to the residual solvent signal or a specified additive (see
Supplementary Materials). The structure determination for all compounds and the assignment of NMR signals was done with the help of a combination of 1D proton and carbon experiments with 2D H,H-COSY, H,C-HSQC, and H,C-HMBC experiments. Standard experiments from the Bruker pulse-sequence library were used. Purity of compounds was measured on Waters UPLC-MS system (Santa Clara, CA, USA) that consisted of Waters UPLC H-Class Core System (column Waters ACQUITY UPLC BEH C18 1.7 mm, 2.1 × 100 mm), Waters ACQUITY UPLC PDA detector and Mass spectrometer Waters SQD2. The universal LC method was used (eluent H
2O/MeCN, gradient 0–100%, run length 7 min) and MS method (ESI
+ and/or ESI
−, cone voltage = 30 V, mass detector range 100–1000 Da). Purity of the final compounds was >95%, unless otherwise stated.
Preparation of starting material. Starting compounds and reagents were purchased from commercial suppliers (Sigma-Aldrich, Prague, Czech Republic; Fluorochem, Hadfield, UK; Fisher Scientific, Pittsburgh, PA, USA; Carbosynth, Compton, UK; TCI Europe, Zwijndrecht, Belgium) and used without further purification. In several cases, we had to prepare the starting material that was not commercially available. Compounds
2d [
29],
2i [
30], and
2m [
31] were prepared according to the published procedures.
2-(1,2-Dihydroxyethyl)-1,3-dioxolane-1,3-diacetate (2b). First, 2-vinyl-1,3-dioxolane was prepared using modified procedure reported by Coates et al. [
32]: a mixture of acrolein (126 g, 147 mL, 2.2 mol), ethane-1,2-diol (126 g, 113 mL, 2.0 mol) and pyridinium
p-toluenesulfonate (1.51 g, 6.0 mmol) in pentane (300 mL) and diethyl ether (100 mL) was refluxed (45 °C) for 1 week using azeotropic apparatus. Acrolein and solvents were distilled off in vacuo. Distillation of the crude reaction mixture (120 °C, ambient pressure) afforded 2-vinyl-1,3-dioxolane (55.5 g, 24%) as bright colorless liquid.
1H- and
13C-NMR spectra were in accordance with the literature [
32]. Secondly, 1-(1,3-dioxolan-2-yl)ethane-1,2-diol was prepared: 4% aq. solution of OsO
4 (5 mL) was added to a stirred solution of 2-vinyl-1,3-dioxolane (20 g, 0.20 mol) in a mixture of acetone/water (5:1, 100 mL) and the resulting mixture was stirred at rt for 10 min.
N-Methylmorpholine
N-oxide (25.8 g, 0.22 mol) was added and the mixture was stirred at rt overnight. A 50% aq. solution of sodium thiosulfate (5 mL) was added and the mixture stirred for additional 30 min. Solvents were removed in vacuo and resulting slurry was dissolved in a mixture of chloroform/methanol (5:1, 150 mL) and filtered through a 5 cm silica gel column. Solvents were removed in vacuo to give 1-(1,3-dioxolan-2-yl)ethane-1,2-diol (21.7 g, 81%) as yellow viscous oil.
1H-NMR (400 MHz, CDCl
3): δ = 4.89–4.83 (m, 1H, O-CH-O), 4.06–3.82 (m, 4H, O-
CH2-
CH2-O), 3.76–3.63 (m, 3H, H-1, H-2 and H-3), 3.29 (bs, 2H, OH).
13C-NMR (100 MHz, CDCl
3): δ = 103.7 (C-1), 72.1 (C-2), 65.4 (O-
CH2-CH
2-O), 65.2 (O-CH
2-
CH2-O), 62.8 (C-3). HRMS (EI
+)
m/
z: [M + H]
+ calcd for C
5H
11O
4, 135.0657; found, 135.0654. Finally, acetic anhydride (10 mL) was added to a solution of 1-(1,3-dioxolan-2-yl)ethane-1,2-diol (5.0 g, 37.3 mmol) in dry pyridine (50 mL) and the resulting mixture was stirred at room temperature overnight. Volatiles were removed in vacuo and the residue was suspended in water (50 mL). The suspension was extracted chloroform (3 × 50 mL). The combined organic fractions were washed with brine (50 mL), dried over MgSO
4, and evaporated to give
2b (4.32 g, 53%) as yellowish viscous oil.
1H-NMR (400 MHz, CDCl
3): δ = 5.03 (ddd,
J(2,3b) = 6.8 Hz,
J(2,1) = 4.5 Hz,
J(2,3a) = 3.1 Hz, 1H, H-2), 4.97 (d,
J(1,2) = 4.5 Hz, 1H, H-1), 4.31 (dd,
J(gem) = 12.1 Hz,
J(3a,2) = 3.1 Hz, 1H, H-3a), 4.09 (dd,
J(gem) = 12.1 Hz,
J(3b,2) = 6.8 Hz, 1H, H-3b), 3.91 (m, 2H, O-
CH2-CH
2-O), 3.83 (m, 2H, O-CH
2-
CH2-O), 2.03 (s, 3H, 2-O-COCH
3), 1.79 (s, 3H, 3-O-COCH
3).
13C-NMR (100 MHz, CDCl
3): δ = 170.6 (3-O-CO), 170.0 (2-O-CO), 101.3 (C1), 71.1 (C2), 65.5 (O-CH
2-
CH2-O), 65.1 (O-
CH2-CH
2-O), 62.0 (C-3), 20.8 (2-O-COCH
3), 20.7 (3-O-COCH
3). HRMS (ESI
+)
m/
z: [M + Na]
+ calcd for C
9H
14O
6Na, 241.0688; found, 241.0683.
1,3-Dioxan-5-yl 4-methylbenzenesulfonate (2i) [
30].
p-Toluenesulfonyl chloride (38.1 g, 0.20 mol) was added to a solution of glycerol formal (20.8 g, 0.20 mol, a mixture of 67% of 1,3-dioxan-5-ol and 33% of (1,3-dioxolan-4-yl)methanol) in dry pyridine (200 mL) cooled to 0 °C. The mixture was stirred at 0 °C for 30 min and then at room temperature for 24 h. Aq. 6N HCl (0.5 L) was added and the mixture was extracted EtOAc (4 × 200 mL). Combined organic layers were washed with 1N HCl (2 × 200 mL), brine (200 mL), dried over MgSO
4, and evaporated. The crude product was dissolved in diethyl ether (500 mL) from which pure product crystallized to give
2i (17.0 g, 33%) as white crystals. Analytical data were in accordance with the literature [
30]. The evaporated filtrate afforded (1,3-dioxolan-4-yl)methyl 4-methylbenzenesulfonate (6.3 g, 12%) as a whitish solid, which was used further in the synthesis of compound
2n.
Benzyl (3aR, 6aS)-tetrahydro-5H-[1,3]dioxolo[4,5-c]pyrrole-5-carboxylate (2k). First, a treatment of benzyl 3-pyrroline-1-carboxylate (1.5 g, 7.38 mmol), N-methylmorpholine N-oxide (1.3 g, 11.0 mmol) and 4% aq. OsO4 solution (0.5 mL) in a THF/water mixture (5:1, 30 mL) afforded benzyl (3S,4R)-3,4-dihydroxypyrrolidine-1-carboxylate (1.5 g, 86%) as light brown viscous oil, which was used directly in the next step. Benzyl (3S,4R)-3,4-dihydroxypyrrolidine-1-carboxylate (1.27 g, 5.35 mmol) and dimethoxymethane (0.26 mL, 5.35 mmol) were dissolved in dry DCM (30 mL). BF3·Et2O (0.68 mL, 5.35 mmol) was added in one portion and the reaction mixture was stirred at room temperature for 15 min. Another portion of dimethoxymethane (0.26 mL, 5.35 mmol) was added and the mixture was stirred at rt for additional 15 min. Water (20 mL) was added, the mixture was extracted with DCM (3 × 20 mL) and combined organic layers washed with brine, dried over MgSO4 and evaporated to give the crude product. Column chromatography on silica gel (3% methanol in chloroform) gave 2k (750 mg, 56%) as light brown viscous oil. 1H-NMR (400 MHz, CDCl3): δ = 7.35 (m, 5H, H-o-Bn, H-m-Bn, H-p-Bn ), 5.13 (s, 2H, Bn-CH2), 5.08 (s, 1H, O-CH2a-O), 4.89 (s, 1H, O-CH2b-O), 4.67 (dt, J(vic) = 3.7 Hz, J(2-3b) = 1.0 Hz, 2H, CH-O), 3.82 (bs, 2H, N-CH2a), 3.44 (m, 2H, N-CH2b). 13C-NMR (100 MHz, CDCl3): δ = 154.1 (C=O), 136.7 (C-i-Bn), 128.6 (C-o-Bn), 128.2 (C-p-Bn), 128.1 (C-m-Bn), 96.0 (O-CH2-O), 79.5 (CH-O ), 78.6 (CH-O ), 67.2 (1′-CH2), 51.3 (N-CH2). HRMS (ESI+) m/z: [M]+ calcd for C13H15NO4, 249.1001; found, 249.1003.
4-(Azidomethyl)-1,3-dioxolane (2n). A mixture of (1,3-dioxolan-4-yl)methyl 4-methylbenzenesulfonate (5.0 g, 19.4 mmol) and sodium azide (2 g, 30.8 mmol) in dry DMSO (30 mL) was stirred at 90 °C for 6 h. The mixture was then poured into water (50 mL) and extracted with diethyl ether (3 × 50 mL). Combined organic layers were washed with brine (50 mL), dried over MgSO4, and evaporated. The crude mixture was purified by flash chromatography (silica gel, cHex to 30% EtOAc linear gradient) to obtain 2n (1.25 g, 50%) as colorless liquid. 1H-NMR (400 MHz, CDCl3): δ = 5.05 (s, 1H, O-CH2a-O), 4.86 (s, 1H, O-CH2b-O), 4.20 (ddt, J(CH,CH2a) = 6.8 Hz, J(CH,CH2b) = 5.6 Hz, J(CH,CH2N3) = 4.5 Hz, 1H, CH), 3.94 (dd, J(gem) = 8.5 Hz, J(CH,CH2a) = 6.8 Hz, 1H, O-CH2a), 3.70 (dd, J(gem) = 8.5 Hz, J(CH,CH2b) = 5.6 Hz, 1H, O-CH2a), 3.44–3.25 (m, 2H, CH2-N3). 13C-NMR (100 MHz, CDCl3): δ = 95.5 (O-CH2-O), 74.3 (CH), 67.3 (O-CH2), 52.5 (CH2-N3). HRMS (EI+) m/z: no peak observed.
2,2-Diethoxyethan-1-ol (2q). 2-Hydroxyacetaldehyde (50 g, 0.28 mol) was added in one portion to 1M solution of NaOH in ethanol (285 mL) and the mixture was stirred at room temperature for 15 min. Then volatiles were removed in vacuo and the residue dissolved in water (50 mL). The solution was extracted with chloroform (3 × 150 mL) and combined organic layers were washed with brine (150 mL), dried over MgSO4, and chloroform was carefully evaporated in vacuo. The residue was distillated (30 °C, 5.85 torr) to give 2q (34.6 g, 91%) as colorless liquid. 1H-NMR (400 MHz, DMSO-d6): δ = 4.63 (t, J(CH2-OH) = 6.1 Hz, 1H, OH), 4.40 (t, J(CH-CH2) = 5.4 Hz, 1H, CH), 3.41–3.64 (m, 4H, CH2-CH3), 3.36–3.29 (m, 2H, CH2-OH), 1.11 (t, J(CH2-CH3) = 7.0 Hz,). 13C-NMR (100 MHz, DMSO-d6): δ = 102.5 (CH), 62.0 (CH2-OH), 61.4 (CH2-CH3), 15.3 (CH3). HRMS (EI+) m/z: [M + Na]+ calcd for C6H14O3Na, 157.0841; found, 157.0839.
2,2-Diethoxyethyl acetate (2t). A mixture of bromoacetaldehyde diethyl acetal (53 g, 0.27 mol), potassium acetate (26 g, 0.27 mol), and tetrabutylammonium bromide (43 g, 0.13 mol) in dry acetonitrile (400 mL) was heated at 130 °C overnight. The mixture was cooled to room temperature, water (100 mL) was added and the mixture was extracted diethyl ether (3 × 30 mL). Combined organic layers were washed with brine, dried over MgSO4 and evaporated. The crude product vas distilled (28 °C, 7.10-2 mbar) to give 2t (38 g, 80%) as colorless liquid. 1H-NMR (400 MHz, CDCl3): δ = 6.53 (t, J (CH2,CH) = 5.3 Hz, 1H, H-2), 5.94 (d, J (CH2,CH) = 5.3 Hz, 2H, H-1), 5.57 (m, 2H, O-CH2-CH3), 5.43 (m, 2H, O-CH2-CH3), 3.94 (s, 3H, OAc-CH3), 3.08 (t, J(CH3,CH2) = 7.1 Hz, 6H, CH3). 13C-NMR (100 MHz, CDCl3): δ = (101 MHz, CDCl3) δ 170.6 (C=O), 99.5 (C-2), 63.9 (C-1), 62.3 (O-CH2-CH3), 20.8 (OAcCH3), 15.2 (O-CH2-CH3). HRMS (EI+) m/z: [M + Na]+ calcd for C8H16O4Na, 199.0946; found, 199.0939.
Tetrahydrofuro[3,4-d][1,3]dioxole (2v) [
33]. First, a treatment of 2,5-dihydrofuran (2.0 g, 28.5 mmol),
N-methylmorpholine
N-oxide (5.0 g, 42.8 mmol), and 4% aq. OsO
4 solution (0.7 mL) in an acetone/water mixture (5:1, 30 mL) afforded (
3R,
4S)-tetrahydrofuran-3,4-diol (2.5 g, 83%) as viscous colorless oil. (
3R,
4S)-tetrahydrofuran-3,4-diol (2.1 g, 20 mmol) and dimethoxymethane (2.1 g, 2.3 mL, 26.2 mmol) were dissolved in dry DCM (20 mL). BF
3·Et
2O (2.9 g, 2.6 mL, 20.0 mmol) was added in one portion to the solution and the mixture was stirred at room temperature for 2 h. Water (50 mL) was added and the mixture was extracted with DCM (3 × 50 mL). Combined organic layers were washed with brine, dried over MgSO
4, and carefully evaporated to give the crude product, which was redistilled to afford
2v (2.0 g, 85%) as light brown liquid. Product was stored under molecular sieves in order to remove any traces of water.
1H-NMR (400 MHz, CDCl
3): δ = 5.05 (s, 1H, O-CHa-O), 4.89 (s, 1H, O-CHb-O), 4.67 (m, 2H, CH), 4.08 (m, 2H, CH
2a), 3.47 (m, 2H, CH
2b).
13C-NMR (100 MHz, CDCl
3): δ = 96.5 (O-CH-O), 80.3 (CH), 73.8 (CH
2). HRMS (EI
+)
m/
z: [M]
+ calcd for C
5H
8O
3, 116.0473; found, 116.0475.
(S,S)-2-(6-Methoxynaphthalene-2-yl)propionic anhydride (3e) [
34].
N,
N′-Dicyclohexylcarbodiimide (1.1 g, 5.33 mmol) was added to a solution of (
S)-2-(6-methoxy-2-naphthyl)propionic acid (2.91 g, 2.6 mL, 20 mmol) and DMAP (80 mg, 0.71 mmol) in dry DCM (100 mL). The mixture was stirred at room temperature for 2 h. Resulting slurry was then filtered and the filtrate evaporated to give 3e (1.0 g, 52%) as white amorphous solid.
1H-NMR (500 MHz, CDCl
3):
δ = 7.50 (d,
J(4,3) = 8.5 Hz, 2H, H-4), 7.49 (d,
J(8,7) = 8.9 Hz, 2H, H-8), 7.40 (d,
J(1,3) = 2.0 Hz, 2H, H-1), 7.13 (dd,
J(3,4) = 8.5 Hz,
J(3,1) = 2.0 Hz, 2H, H-3), 7.10 (dd,
J(7,8) = 8.9 Hz,
J(7,5) = 2.6 Hz, 2H, H-7), 7.03 (d,
J(5,7) = 2.6 Hz, 2H, H-5), 3.93 (s, 6H, CH
3O), 3.80 (q,
J(CH,CH
3) = 7.1 Hz, 2H, CH
3-
CH), 1.49 (d,
J(CH
3,CH) = 7.1 Hz, 6H, CH
3).
13C-NMR (125 MHz, CDCl
3)
δ = 170.0 (COO), 157.7 (C-6), 133.7 (C-4a), 133.6 (C-2), 129.2 (C-8), 128.8 (C-8a), 127.3 (C-4), 126.3 (C1), 125.8 (C3), 119.0 (C-7), 105.5 (C-5), 55.3 (CH
3O), 46.3 (CH
3-
CH), 17.8 (
CH3-CH). HRMS (ESI
+)
m/
z: [M + Na]
+ calcd for C
28H
26O
5Na, 465.1672; found, 465.1668.
Preparation of acyclic nucleoside analogues. General procedure A. The 6-Chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and acetic anhydride (3a, 204 mg, 0.2 mL, 2.0 mmol) were dissolved in dry acetonitrile (10 mL, or other solvent). Corresponding Lewis acid (2.0 mmol), e.g., trimethylsilyl trifluoromethanesulfonate (TMSOTf, 445 mg, 0.36 mL, 2.0 mmol), was added in one portion (either at room temperature or at 70 °C) and the reaction mixture was stirred for 15 min at the same temperature. The mixture was then poured into water (50 mL) and stirred for additional 2 min at room temperature. The slurry was washed with chloroform (3 × 50 mL) and combined organic layers were washed with brine, dried over MgSO4 and evaporated. The crude product was purified with flash chromatography on silica gel using gradient CHCl3 to 10% MeOH to obtain the pure product.
General synthetic procedure B. The 6-Chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and corresponding acid anhydride or acyl chloride, e.g., acetic anhydride (3a, 204 mg, 0.2 mL, 2.0 mmol), were dissolved in dry acetonitrile (10 mL). Corresponding Lewis acid (3.0 mmol), e.g., TMSOTf (667 mg, 0.54 mL, 3.0 mmol), was added in one portion at room temperature and the reaction mixture was stirred for 15 min at room temperature. Reaction work up as in General procedure A.
2-(2-Bromo-1-(6-chloro-9H-purin-7-yl)ethoxy)ethyl acetate (4) and 2-(2-bromo-1-(6-chloro-7H-purin-7-yl)ethoxy)ethyl acetate (5).Method A: treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) in MeCN by synthetic procedure A afforded 4 (508 mg, 83%) as yellowish viscous oil. Method B: treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B afforded 4 (520 mg, 85%) as yellowish viscous oil. Method C: treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) in nitromethane by synthetic procedure A afforded 4 (380 mg, 62%) and 5 (31 mg, 5%) as yellowish viscous oils. Compound 4: 1H-NMR (500 MHz, DMSO-d6): δ = 8.95 (s, 1H, H-8), 8.85 (s, 1H, H-2), 6.14 (dd, J(1′,2′b) = 7.1 Hz, J(1′,2′a) = 5.8 Hz, 1H, H-1′), 4.23 (dd, J(gem) = 10.8 Hz, J(2′b,1′) = 7.1 Hz, 1H, H-2′b), 4.15 (dd, J(gem) = 10.8 Hz, J(2′a,1′) = 5.8 Hz, 1H, H-2′a), 4.09 (ddd, J(gem) = 12.4 Hz, J(CH2b,CH2a) = 6.6 Hz, J(CH2b,CH2b) = 2.8 Hz, 1H, COO-CH2b-CH2-O), 4.01 (ddd, J(gem) = 12.4 Hz, J(CH2a,CH2b) = 6.0 Hz, J(CH2a,CH2a) = 2.8 Hz, 1H, COO-CH2a-CH2-O), 3.86 (ddd, J(gem) = 11.7 Hz, J(CH2b,CH2a) = 6.0 Hz, J(CH2b,CH2b) = 2.8 Hz, 1H, COO-CH2-CH2b-O), 3.62 (ddd, J(gem) = 11.7 Hz, J(CH2a,CH2b) = 6.7 Hz, J(CH2a,CH2a) = 2.8 Hz, 1H, COO-CH2-CH2a-O), 1.88 (s, 3H, CH3COO); 13C-NMR (125 MHz, DMSO-d6): δ = 170.3 (COO), 152.3 (C-2), 152.1 (C-4), 149.6 (C-6), 145.8 (C-8), 131.3 (C-5), 84.2 (C-1′), 68.8 (COO-CH2-CH2-O), 62.8 (COO-CH2-CH2-O), 31.8 (C-2′), 20.7 (CH3-COO); HRMS (ESI+) m/z: [M + Na]+ calcd. for C11H12O3N4BrClNa, 384.9674; found, 384.9675. Compound 5: 1H NMR (400 MHz, DMSO-d6): δ = 9.07 (s, 1H, H-8), 8.88 (s, 1H, H-2), 6.41 (t, J(1′-2′) = 6.0 Hz, 1H, H-1′), 4.11 (m, 4H, H-2′, CH2-OAc), 3.93 (ddd, J(gem) = 11.7 Hz, J(CH2-CH2) = 5.7 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2b), 3.75 (ddd, J(gem) = 11.6 Hz, J(CH2-CH2) = 6.5 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1′-O-CH2a), 1.91 (s, 3H, CH3); 13C-NMR (101 MHz, DMSO-d6) δ = 170.1 (COO), 161.8 (C-4), 151.9 (C-2), 148.8 (C-8), 142.2 (C-6), 122.0 (C-5), 85.7 (C-1′), 67.6 (1′-O-CH2), 62.6 (CH2-OAc), 33.4 (C-2′), 20.5 (CH3); HRMS (ESI+): m/z: [M + Na]+ calcd. for C11H12O3N4BrClNa, 384.9674, found, 384.9679.
3-(2-Acetoxyethoxy)-3-(6-chloro-9H-purin-9-yl)propane-1,2-diyl diacetate (6). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 2-(1,2-dihydroxyethyl)-1,3-dioxolane-1,3-diacetate (2b, 439 mg, 2.0 mmol) by synthetic procedure B afforded 6 (413 mg, 72%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 8.83–8.89 (m, 2H, H-2 and H-8), 6.19–6.10 (m, 1H, H-1′), 5.75–5.65 (m, 1H, H-2′), 4.41–4.25 (m, 2H, H-3′), 3.99–4.14 (m, 2H, 1′-O-CH2-CH2), 3.60–3.69 and 3.76–3.83 (m, 2H, 1′-O-CH2), 2.05, 2.00, 1.94, 1.93, 1.90 and 1.76 (6×s, 9H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 169.1–170.3 (m, COO), 152.3 and 151.8 (C-4), 152.24 and 152.21 (C-2), 149.5 (C-6), 146.3 and 145.7 (C-8), 131.4 and 131.2 (C-5), 83.5 and 82.9 (C-1′), 70.4 and 70.3 (C-2′), 68.0 and 67.7 (1′-O-CH2), 62.8 and 62.5 (1′-O-CH2-CH2), 61.9 and 61.4 (C-3′), 20.3–20.6 (m, CH3). HRMS (ESI+) m/z: [M + Na]+ calcd. for C16H19O7N4ClNa, 437.0835; found, 437.0835.
3-((6-Chloro-9H-purin-9-yl)methoxy)propyl acetate (7). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 1,3-dioxane (2c, 283 mg, 0.28 mL, 2.0 mmol) by synthetic procedure B afforded 7 (720 mg, 78%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 8.85 (s, 1H, H-8), 8.82 (s, 1H, H-2), 5.69 (s, 2H, H-1′), 3.92 (t, J(4′,3′) = 6.4 Hz, 2H, H-4′), 3.57 (t, J(2′,3′) = 6.2 Hz, 2H, H-2′), 1.88 (s, 3H, CH3), 1.75 (p, J(3′,2′) = 6.4 Hz, J(3′,4′) = 6.4 Hz, 2H, H-3′). 13C-NMR (125 MHz, DMSO-d6): δ = 170.4 (COO), 152.3 (C-4), 152.2 (C-2), 149.4 (C-6), 147.9 (C-8), 131.0 (C-5), 73.1 (C-1′), 65.7 (C-2′), 60.8 (C-4′), 28.2 (C-3′), 20.7 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd for C11H14O3N4Cl, 285.0749; found, 285.0748.
S-(2-((6-Chloro-9H-purin-9-yl)methoxy)ethyl) ethanethioate (8) and S-(2-((6-chloro-7H-purin-7-yl)methoxy)ethyl) ethanethioate (9). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and 1,3-oxathiolane (2d, 180 mg, 2.0 mmol) by synthetic procedure B afforded 8 (86 mg, 15%) and 9 (57 mg, 10%) as brownish oils that solidified upon standing. Compound 8: 1H-NMR (500 MHz, DMSO-d6): δ = 8.84 (s, 1H, H-8), 8.83 (s, 1H, H-2), 5.70 (s, 2H, N-CH2-O), 3.65 (t, J(CH2,CH2) = 6.2 Hz, 2H, CH2-CH2-S), 2.97 (t, J(CH2,CH2) = 6.2 Hz, 2H, CH2-S), 2.25 (s, 3H, CH3); 13C-NMR (125 MHz, DMSO-d6) δ = 195.0 (C=O), 152.3 (C-4), 152.3 (C-2), 149.5 (C-6), 147.9 (C-8), 131.1 (C-5), 72.9 (N-CH2-O), 67.9 (CH2-CH2-S), 30.6 (CH3), 28.3 (CH2-S); HRMS (EI+) m/z: [M]+ calcd. for C10H11ClN4O2S, 286.0291; found, 286.0287. Compound 9: 1H-NMR (500 MHz, DMSO-d6): δ = 8.98 (s, 1H, H-8), 8.86 (s, 1H, H-2), 5.82 (s, 2H, N-CH2-O), 3.59 (t, J(CH2,CH2) = 6.2 Hz, 2H, CH2-CH2-S), 2.97 (t, J(CH2,CH2) = 6.2 Hz, 2H, CH2-S), 2.21 (s, 3H, CH3); 13C-NMR (125 MHz, DMSO-d6): δ = 195.0 (C=O), 162.3 (C-4), 152.4 (C-2), 151.4 (C-8), 143.1 (C-6), 122.1 (C-5), 75.4 (N-CH2-O), 66.8 (CH2-CH2-S), 30.5 (CH3), 28.3 (CH2-S); HRMS (EI+) m/z: [M]+ calcd. for C10H11ClN4O2S, 286.0291; found, 286.0292.
2-(2-Bromo-1-(6-chloro-2-fluoro-9H-purin-9-yl)ethoxy)ethyl acetate (12). Treatment of 6-chloro-2-fluoropurine (1b, 345 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B afforded 12 (427 mg, 56%) as a yellow oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.94 (s, 1H, H-8), 6.06 (dd, J(1′,2′b) = 6.9 Hz, J(1′,2′a) = 5.9 Hz, 1H, H-1′), 4.14 (dd, J(gem) = 10.9 Hz, J(2′b,1′) = 6.9 Hz, 1H, H-2′b), 4.11 (ddd, J(gem) = 12.4 Hz, J(CH2b,CH2a) = 6.5 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, COO-CH2b-CH2-O), 4.10 (dd, J(gem) = 10.9 Hz, J(2′a,1′) = 5.9 Hz, 1H, H-2′a), 4.03 (ddd, J(gem) = 12.4 Hz, J(CH2a,CH2b) = 6.1 Hz, J(CH2a,CH2a) = 2.9 Hz, 1H, COO-CH2a-CH2-O), 3.86 (ddd, J(gem) = 11.6 Hz, J(CH2b,CH2a) = 6.1 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, COO-CH2-CH2b-O), 3.65 (ddd, J(gem) = 11.6 Hz, J(CH2a,CH2b) = 6.5 Hz, J(CH2a,CH2a) = 2.9 Hz, 1H, COO-CH2-CH2a-O), 1.93 (s, 3H, CH3COO). 13C-NMR (125 MHz, DMSO-d6): δ = 170.4 (COO), 156.5 (d, J(2,F) = 214.6 Hz, C-2), 154.0 (d, J(4,F) = 17.5 Hz, C-4), 151.0 (d, J(6,F) = 18.2 Hz, C-6), 146.5 (d, J(8,F) = 2.9 Hz, C-8), 130.4 (d, J(5,F) = 4.9 Hz, C-5), 84.3 (C-1′), 67.8 (1′-CH2-CH2-O), 62.8 (1′-CH2-CH2-O), 31.7 (C-2′), 20.7 (CH3COO). HRMS (ESI+) m/z: [M + Na]+ calcd. for C11H11O3N4BrClFNa, 402.9579; found, 402.9572.
2-(2-Bromo-1-(2,6-dichloro-9H-purin-9-yl)ethoxy)ethyl acetate (13). Treatment of 2,6-dichloropurine (1c, 378 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B afforded 13 (421 mg, 54%) as a viscous yellow oil. 1H-NMR (400 MHz, DMSO-d6) δ = 8.95 (s, 1H, H-8), 6.10 (bt, J(CH-CH2) = 6.3 Hz, H-1’), 4.14 (dd, J(gem) = 10.9 Hz, J(CH2-CH) = 6.7 Hz, 1H, H-2’b), 4.11 (m, 1H, 1’-O-CH2-CH2b), 4.10 (dd, J(gem) = 10.9 Hz, J(CH2-CH) = 6.0 Hz, 1H, H-2’a), 4.04 (ddd, J(gem) = 12.4 Hz, J(CH2-CH2) = 6.1 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2-CH2a), 3.86 (ddd, J(gem) = 11.7 Hz, J(CH2-CH2) = 6.1 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2b-CH2), 3.66 (ddd, J(gem) = 11.7 Hz, J(CH2-CH2) = 6.5 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2a-CH2), 1.93 (s, 3H, CH3OAc). 13C-NMR (100 MHz, DMSO-d6): δ = 170.70 (COO), 153.5 (C-4), 151.6 (C-2 or C-6), 150.2 (C-2 or C-6), 146.5 (C-8), 130.93 (C-5), 84.3 (C-1’), 67.8 (1’-O-CH2-CH2), 62.7 (1’-O-CH2-CH2 ), 31.8 (C-2), 20.7 (CH3OAc). HRMS (ESI+) m/z: [M + Na]+ calcd. for C11H11O3N4BrCl2Na, 418.9283; found, 418.9281.
2-((2,6-Dichloro-9H-purin-9-yl)methoxy)ethyl acetate (14) [
14]. Treatment of 2,6-dichloropurine (
1c, 378 mg, 2.0 mmol) and 1,3-dioxolane (
2g, 148 mg, 0.14 mL, 2.0 mmol) by synthetic procedure B afforded
14 (65 mg, 11%) as a yellowish oil. Analytical data were in accordance with the literature [
14]. HRMS (ESI
+)
m/
z: [M + Na]
+ calcd. for C
10H
10O
3N
4Cl
2Na, 327.0022; found, 327.0021.
2-((2-Amino-6-chloro-9H-purin-9-yl)methoxy)ethyl acetate (16) [
14]. Treatment of 2-amino-6-chloropurine (
1d, 340 mg, 2.0 mmol) and 1,3-dioxolane (
2g, 148 mg, 0.14 mL, 2.0 mmol) by synthetic procedure B afforded
16 (370 mg, 65%) as a viscous yellowish oil. Analytical data were in accordance with the literature [
14]. HRMS (ESI
+)
m/
z: [M + Na]
+ calcd. for C
10H
12O
3N
5ClNa, 308.0521; found, 308.0523.
3-((2-Acetamido-6-chloro-9H-purin-9-yl)methoxy)-2-(tosyloxy)propyl acetate (17). Method A: treatment of 2-amino-6-chloropurine (1d, 340 mg, 2.0 mmol), 1,3-dioxan-5-yl 4-methylbenzenesulfonate (2i, 510 mg, 2.0 mmol) and acetic anhydride (3a, 204 mg, 0.2 mL, 2.0 mmol)by synthetic procedure B afforded 17 (502 mg, 49%) as a white amorphous solid. Method B: 2-Amino-6-chloropurine (1d, 340 mg, 2.0 mmol), 1,3-dioxan-5-yl 4-methylbenzenesulfonate (2i, 510 mg, 2.0 mmol) and acetic anhydride (3a, 408 mg, 0.4 mL, 4.0 mmol) were dissolved in dry acetonitrile (10 mL). TMSOTf (667 mg, 0.54 mL, 3.0 mmol), was added in one portion at room temperature and the reaction mixture was stirred for 15 min at room temperature. Reaction work up as in method A afforded 17 (605 mg, 59%) as a white amorphous solid. Method C: treatment of N-(6-chloro-7(9)H-purin-2-yl)acetamide (1e, 423 mg, 2.0 mmol) and 1,3-dioxan-5-yl 4-methylbenzenesulfonate (2i, 510 mg, 2.0 mmol) by synthetic procedure B afforded 17 (738 mg, 72%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 10.88 (bs, 1H, NH), 8.57 (s, 1H, H-8), 7.69 (m, 2H, H-2″), 7.37 (m, 2H, H-3″), 5.52 (s, 2H, H-1′), 4.74 (m, 1H, H-3′), 4.02–4.10 (m, 2H, H-4′), 3.78 (dd, J(gem) = 11.5 Hz, J(2′a,3′) = 5.3 Hz, 1H, H-2′a), 3.73 (dd, J(gem) = 11.4 Hz, J(2′b,3′) = 3.8 Hz, 1H, H-2′b), 2.38 (s, 3H, 4″-CH3), 2.20 (s, 3H, CH3-CON), 1.81 (s, 3H, CH3-COO). 13C-NMR (125 MHz, DMSO-d6): δ = 170.0 (COO), 169.0 (CON), 153.2 (C-4), 152.6 (C-2), 149.4 (C-6), 146.5 (C-8), 145.1 (C-4″), 133.2 (C-1″), 130.1 (C-3″), 127.7 (C-2″), 127.3 (C-5), 78.4 (C-3′), 72.9 (C-1′), 67.9 (C-2′), 62.2 (C-4′), 24.8 (CH3-CON), 21.3 (4″-CH3), 20.4 (CH3-COO). HRMS (ESI+) m/z: [M + H]+ calcd. for C20H23O7N5ClS, 512.1001; found, 512.1002.
Benzyl 3-((2-acetamido-6-chloro-9H-purin-9-yl)methoxy)-4-acetoxypyrrolidine-1-carboxylate (20). Treatment of N-(6-chloro-7(9)H-purin-2-yl)-acetamide (1e, 423 mg, 2.0 mmol) and benzyl tetrahydro-5H-[1,3]dioxolo[4,5-c]pyrrole-5-carboxylate (2k, 500 mg, 2.0 mmol) by synthetic procedure B afforded 20 (640 mg, 64%) as a yellowish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 10.91 and 10.92 (bs, 1H, NH), 8.62 and 8.62 (s, 1H, H-8), 7.28–7.37 (m, 5H, H-2″ and H3″ and H-4″), 5.60–5.68 (m, 2H, N-CH2-O), 5.20–5.24 (m, 1H, H-4′), 5.00–5.07 (m, 2H, 1″-CH3), 4.60–4.64 (m, 1H, H-3′), 3.55–3.67 (m, 2H, H-2′a and H-5′a), 3.17–3.37 (m, 2H, H-2′b and H-5′b), 2.17 and 2.17 (s, 3H, CH3-CON), 1.90 and 1.91 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 169.83 and 169.80 (CH3-COO), 168.90 and 168.88 (CH3-CON), 154.0 and 154.1 (N-COO), 153.3 and 153.3 (C-4), 152.5 (C-2 or C-6), 149.4 (C-2 or C-6), 146.6 (C-8), 137.01 and 136.98 (C-1″), 128.6 (C-3″), 128.07 and 128.05 (C-4″), 127.77 and 127.75 (C-2″), 127.4 (C-5), 75.6 and 76.1 (C-3′), 72.14 and 72.08 (N-CH2-O), 71.2 and 70.5 (C-4′), 66.28 and 66.26 (1″-CH2), 48.8 and 49.1 (C-5′), 47.9 and 48.2 (C-2′), 24.7 (CH3-CON), 20.70 and 20.68 (CH3-COO). HRMS (ESI+) m/z: [M + H]+ calcd. for C22H24O6N6Cl, 503.1440; found, 503.1444.
2-(1-(6-Amino-4-chloro-2H-pyrazolo[3,4-d]pyrimidin-2-yl)-2-bromoethoxy)ethyl acetate (22). Treatment of 4-chloro-1H-pyrazolo[3,4-d]pyrimidine-6-amine 1g (340 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B afforded 22 (720 mg, 78%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 8.86 (s, 1H, H-7), 8.37 (bs, 2H, NH2), 5.83 (t, J(1′,2′) = 2.9 Hz, 1H, H-1′), 4.13 (ddd, J(gem) = 12.3 Hz, J(CH2,CH2) = 6.5 Hz, J(CH2,CH2) = 2.9 Hz, 1H, CH2b-OAc), 4.03 (ddd, J(gem) = 12.3 Hz, J(CH2,CH2) = 6.2 Hz, J(CH2,CH2) = 3.0 Hz, 1H, CH2a-OAc), 3.93 (d, J(2′,1′) = 6.2 Hz, 2H, H-2′), 3.79 (ddd, J(gem) = 11.6 Hz, J(CH2,CH2) = 6.2 Hz, (CH2,CH2) = 2.9 Hz, 1H, 1′-O-CH2b), 3.55 (ddd, J(gem) = 11.6 Hz, J(CH2,CH2) = 6.5 Hz, (CH2,CH2) = 2.9 Hz, 1H, 1′-O-CH2a), 1.98 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 170.5 (COO), 156.6 (C-2), 153.2 (C-6), 150.1 (C-4), 131.8 (C-7), 102.0 (C-5), 89.7 (C-1′), 67.4 (1′-O-CH2), 62.7 (CH2-OAc), 31.8 (C-2′), 20.9 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C11H14O3N5BrCl, 377.9963; found, 377.9965.
2-(1-(Guanine-7-yl)-2-bromoethoxy)ethyl acetate (23). Treatment of guanine (1h, 300 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B afforded 23 (86 mg, 15%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 10.97 (bs,1H,1-NH), 8.24 (s, 1H, H-8), 6.26 (bs, 2H, NH2), 6.03 (t, J(1′,2′a) = J(1′,2′b) = 6.3 Hz, 1H, H-1′), 4.16 (dd, J(gem) = 10.7 Hz, J(2′b,1′) = 6.7 Hz, 1H, H-2′b), 4.12 (ddd, J(gem) = 12.3 Hz, J(CH2b,CH2a) = 6.8 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, 1′-O-CH2-CH2b-O), 4.03 (dd, J(gem) = 10.7 Hz, J(2′a,1′) = 5.9 Hz, 1H, H-2′a), 4.01 (ddd, J(gem) = 12.3 Hz, J(CH2a,CH2b) = 5.9 Hz, J(CH2a,CH2a) = 2.8 Hz, 1H, 1′-O-CH2-CH2a-O), 3.76 (ddd, J(gem) = 11.7 Hz, J(CH2b,CH2a) = 5.9 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, 1′-O-CH2b-CH2-O), 3.57 (ddd, J(gem) = 11.7 Hz, J(CH2a,CH2b) = 6.8 Hz, J(CH2a,CH2a) = 2.9 Hz, 1H, 1′-O-CH2a-CH2-O-), 1.95 (s, 3H, CH3CO). 13C-NMR (125 MHz, DMSO-d6): δ = 170.4 (COO), 160.7 (C-4), 154.5 (C-6), 153.2 (C-2), 142.5 (C-8), 107.7 (C-5), 85.2 (C-1′), 67.1 (1′-O-CH2-CH2-O), 62.8 (1′-O-CH2-CH2-O), 32.9 (C-2′), 20.8 (CH3COO). HRMS (ESI+) m/z: [M + Na]+ calcd for C11H14O4N5BrNa, 382.0121; found, 382.0118.
2-(1-(Adenin-9-yl)-2-bromoethoxy)ethyl acetate (24). Treatment of adenine (1i, 270 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B and modified work up (the crude reaction mixture was adsorbed on silica gel, followed by flash chromatography using gradient CHCl3 to 10% MeOH) afforded 24 (378 mg, 55%) as a yellow viscous oil. 1H-NMR (400 MHz, DMSO-d6) δ = 8.37 (s, 1H, H-8), 8.17 (s, 1H, H-2), 7.36 (bs, 2H, NH2), 5.94 (dd, J(CH2-CH2) = 7.3 Hz, J(CH2-CH2) = 5.7 Hz, 1H, H-1’), 4.22 (d, J(gem) = 10.7 Hz, J(CH2-CH2) = 7.3 Hz, 1H, H-2’b), 4.10 (ddd, J(gem) = 12.4 Hz, J(CH2-CH2) = 6.7 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2-CH2b), 4.09 (dd, J(gem) = 10.6 Hz, J(CH2-CH) = 5.7 Hz, H-2’a), 4.00 (ddd, J(gem) = 12.3 Hz, J(CH2-CH2) = 6.0 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2-CH2a), 3.79 (ddd, J(gem) = 11.6 Hz, J(CH2-CH2) = 6.0 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2b-CH2), 3.55 (ddd, J(gem) = 11.6 Hz, J(CH2-CH2) = 6.7 Hz, J(CH2-CH2) = 2.9 Hz, 1H, 1’-O-CH2a-CH2), 1.91 (s, 3H, CH3). 13C-NMR (100 MHz, DMSO-d6): δ = 170.4 (COO), 156.2 (C-6), 153.0 (C-2), 149.8 (C-4), 139.2 (C-8), 118.8 (C-5), 83.2 (C-1’), 67.7 (1’-O-CH2-CH2), 62.8 (1’-O-CH2-CH2), 31.9 (C-2’), 20.7 (CH3-OAc). HRMS (ESI+) m/z: [M + H]+ calcd. for C11H15O3N5Br, 344.0353; found, 344.0348.
2-((6-Benzamido-9H-purin-9-yl)methoxy)ethyl acetate (25). Treatment of N6-benzoyladenine (1j, 480 mg, 2.0 mmol) and 1,3-dioxolane (2g, 148 mg, 0.14 mL, 2.0 mmol) by synthetic procedure B afforded 25 (500 mg, 71%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 11.25 (bs, 1H, NH). 8.78 (s, 1H, H-2), 8.64 (s, 1H, H-8), 8.06 (m, 2H, H-2″), 7.65 (m, 1H, H-4″), 7.55 (m, 2H, H-3″), 5.72 (s, 2H, H-1′), 4.10 (m, 2H, H-3′)3.77, (m, 2H, H-2′), 1.93 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6) δ = 170.5 (COO), 165.9 (CON), 152.8 (C-4), 152.1 (C-2), 150.6 (C-6), 145.1 (C-8), 133.6 (C-1″), 132.6 (C-4″), 128.7 (C-2″ and C-3″), 125.4 (C-5), 72.6 (C-1′), 67.4 (C-2′), 63.0 (C-3′), 20.7 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd for C17H18O4N5, 356.1353; found, 356.1354.
2-((6-Benzamido-9H-purin-9-yl)methoxy)but-3-en-1-yl acetate (26). Treatment of N6-benzoyladenine (1j, 480 mg, 2.0 mmol) and 4-vinyl-[1,3]dioxolane (2m, 200 mg, 0.2 mL, 2.0 mmol) by synthetic procedure B afforded 26 (430 mg, 56%) as a colorless viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 11.23 (bs, 1H, NH), 8.78 (s, 1H, H-2), 8.63 (s, 1H, H-8), 8.05 (m, 2H, H-2″), 7.65 (m, 1H, H-4″), 7.55 (m, 2H, H-3″), 5.76 (d, J(gem) = 11.2 Hz, 1H, 1′a), 5.74 (ddd, J(CH,CH2) = 17.2 and 10.6, J(CH,2′) = 6.3 Hz, 1H, CH=CH2), 5.65 (d, J(gem) = 11.3 Hz, 1H, H-1′b), 5.65 (dt, J(CH2,CH) = 17.3 Hz, J(gem) = J(CH2,2′) = 1.5 Hz, 1H, CH=CH2a), 5.23 (dt, J(CH2,CH) = 10.5 Hz, J(gem) = J(CH2,2′) = 1.5 Hz, 1H, CH=CH2b), 4.36 (m, 1H, H-2′) 4.00 (dd, J(gem) = 11.7 Hz, J(3′a,2′) = 3.6 Hz, 1H, 3′a), 3.39 (dd, J(gem) = 11.7 Hz, J(3′b,2′) = 7.5 Hz, 1H, H-3′b), 1.81 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 170.2 (COO), 165.8 (CON), 152.8 (C-4), 152.1 (C-2), 150.5 (C-6), 145.0 (C-8), 133.9 (CH=CH2), 133.6 (C-1″), 132.6 (C-4″), 128.7 (C-2″ and C-3″), 125.4 (C-5), 119.0 (CH=CH2), 77.4 (C-2′), 71.2 (C-1′), 65.2 (C-3′), 20.5 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd for C19H19N5O4, 382.1510; found: 382.1511.
2-(2-Bromo-1-(2,6-diamino-9H-purin-9-yl)ethoxy)ethyl acetate (29). Treatment of 2,6-diaminopurine (1k, 300 mg, 2.0 mmol) and 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) by synthetic procedure B and modified work up (the crude reaction mixture was adsorbed on silica gel, followed by flash chromatography using gradient CHCl3 to 10% MeOH) afforded 29 (431 mg, 60%) as a yellow viscous oil. 1H-NMR (400 MHz, DMSO-d6) δ = 7.91 (s, 1H, H-8), 6.76 (bs, 2H, 6-NH2), 5.88 (bs, 2H, 2-NH2), 5.70 (dd, J(CH2-CH2) = 6.9 Hz, J(CH2-CH2) = 6.0 Hz, 1H, H-1’), 4.14 (dd, J(gem) = 10.7 Hz, J(CH2-CH) = 7.0 Hz, 1H, H-2’b), 4.11 (ddd, J(gem) = 12.3 Hz, J(CH2-CH2) = 6.7 Hz, J(CH2-CH2) = 3.0 Hz, 1H, 1’-O-CH2-CH2b), 4.03 (dd, J(gem) = 10.5 Hz, J(CH2-CH) = 6.0 Hz, 1H, H-2’a), 4.02 (ddd, J(gem) = 12.3 Hz, J(CH2-CH2) = 6.0 Hz, J(CH2-CH2) = 3.0 Hz, 1H, 1’-O-CH2-CH2a), 3.73 (ddd, J(gem) = 11.5 Hz, J(CH2-CH2) = 6.0 Hz, J(CH2-CH2) = 3.0 Hz, 1H, 1’-O-CH2b-CH2), 3.53 (ddd, J(gem) = 11.5 Hz, J(CH2-CH2) = 6.7 Hz, J(CH2-CH2) = 3.0 Hz, 1H, 1’-O-CH2a-CH2), 1.94 (s, 3H, CH3-OAc). 13C-NMR (100 MHz, DMSO-d6): δ = 170.4 (COO), 160.6 (C-2), 156.3 (C-6), 152.1 (C-4), 135.5 (C-8), 113.2 (C-5), 82.7 (C-1’), 66.9 (1’-O-CH2-CH2), 62.8 (1’-O-CH2-CH2), 32.1 (C-2’), 20.7 (CH3-OAc). HRMS (ESI+) m/z: [M + H]+ calcd. for C11H16O3N6Br, 359.0462; found, 359.0457.
3-(2-Acetoxyethoxy)-3-(2,6-diacetamido-9H-purin-9-yl)propane-1,2-diyl diacetate (30). Treatment of 2,6-bisacetamidopurine (1l, 470 mg, 2.0 mmol) and 2-(1,2-dihydroxyethyl)-1,3-dioxolane-1,3-diacetate (2b, 439 mg, 2.0 mmol) by synthetic procedure B afforded 30 (690 mg, 70%) as a white amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ =10.59 and 10.56 (bs, 1H, C6-NH), 10.38 (bs, 1H, C2-NH), 8.46 and 8.44 (s, 1H, H-8),5.96 and 5.90 (d, J(1′,2′) = 7.6 Hz and J(1′,2′) = 6.3 Hz, 1H, H-1′), 5.74 and 5.66 (m, 1H, H-2′), 3.42–4.98 (m, 4H, H-3′ and 1′-O-CH2-CH2), 3.78–3.57 (m, 2H, 1′-O-CH2), 2.35, 2.34, 2.27 and 2.26 (s, 6H, CH3-CON), 2.06, 2.02, 1.94, 1.93, 1,92 and 1.80 (s, 9H, CH3-COO). 13C-NMR (125 MHz, DMSO-d6): δ = 169.1–170.4 (COO and CON), 153.1 (C-4), 152.7 (C-4 or C-6), 152.6 (C-4 or C-6), 152.6 (C-6), 149.92 and 149.85 (C-2), 141.5 and 141.9 (C-8), 119.4 and 119.5 (C-5), 82.0 and 82.7 (C-1′), 70.3 and 70.5 (C-2′), 67.4 and 67.7 (1′-O-CH2), 62.5 and 62.8 (1′-O-CH2-CH2), 61.5 and 62.0 (C-3′), 24.99, 24.96 and 24.92 (CH3-CON), 20.4–20.7 (m, CH3-COO). HRMS (ESI+) m/z: [M + H]+ calcd. for C20H27O9N6, 495.1834; found, 495.1835.
6-Chloro-9-(2-chloro-1-ethoxyethyl)-9H-purine (31). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol) and chloroacetaldehyde diethyl acetal (2o, 300 mg, 0.3mL, 2.0 mmol) by synthetic procedure B afforded 31 (428 mg, 82%) as a brownish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.75 (s, 1H, H-2 ), 8.32 (s, 1H, H-8), 6.00 (dd, J(1′,2′a) = 6.3 Hz, J(1′,2′b) = 4.8 Hz, H-1′), 4.04 (dd, J(gem) = 11.9 Hz, J(2′a,1′) = 6.3 Hz, 1H, H-2′a), 3.96 (dd, J(gem) = 11.9 Hz, J(2′b,1′) = 4.8 Hz, 1H, H-2′b), 3.52 and 3.64 (2×m, 2H, 1′-O-CH2), 1.22 (t, J(CH3,CH2) = 7.00 Hz, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 152.3 (C-2), 151.7 (C-4), 151.4 (C-6), 143.0 (C-8), 131.8 (C-5), 84.2 (C-1′), 66.2 (O-CH2), 44.4 (C-2′), 14.6 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C9H10ON4Cl2Na, 283.0124; found, 283.0124.
6-Chloro-9-(1-ethoxyprop-2-yn-1-yl)-2-fluoro-9H-purine (34). Treatment of 6-chloro-2-fluoropurine (1b, 345 mg, 2.0 mmol) and 3,3-diethoxyprop-1-yne (2r, 256 mg, 2.0 mmol) by synthetic procedure B afforded 34 (183 mg, 36%) as a brownish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.93 (s, 1H, H-8), 6.69 (d, J(1′,3′) = 2.1 Hz, 1H, H-1′), 4.15 (d, J(3′,1′) = 2.1 Hz, 1H, H-3′), 3.52–3.65 (m, 2H, O-CH2), 1.09 (t, J(CH3,CH2) = 7.0 Hz, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 156.6 (d, J(2,F) = 214.9 Hz, C-2), 153.2 (d, J(4,F) = 17.7 Hz, C-4), 151.2 (d, J(6,F) = 18.1 Hz, C-6), 146.4 (d, J(8,F) = 3.2 Hz, C-8), 130.4 (d, J(5,F) = 4.8 Hz, C-5), 80.0 (C-3′), 76.6 (C-2′), 73.3 (C-1′), 63.9 (O-CH3), 14.7 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd for C10H8ClFN4O, 254.0371; found, 254.0373.
4-(Adenine-9-yl)-4-methoxybutan-2-one (35). Treatment of adenine (1i, 270 mg, 2.0 mmol) and 4,4-dimethoxy-2-butanone (2s, 321 mg, 0.32 mL, 2.0 mmol) by synthetic procedure B afforded 35 (109 mg, 23%) as a pinkish amorphous solid. 1H-NMR (500 MHz, DMSO-d6): δ = 8.34 (s, 1H, H-8), 8.16 (s, 1H, H-2), 7.30 (bs, 2H, NH2), 5.92 (dd, J(1′,2′b) = 7.4 Hz, J(1′,2′a) = 5.4 Hz, 1H, H-1′), 3.59 (dd, J(gem) = 17.3 Hz, J(2b′,1′) = 7.4 Hz, 1H, H-2′b), 3.38 (dd, J(gem) = 17.3 Hz, J(2a′,1′) = 5.4 Hz, 1H, H-2′a), 3.13 (s, 3H, CH3O), 2.12 (s, 3H, H-4′). 13C-NMR (125 MHz, DMSO-d6): δ = 204.6 (C-3′), 156.3 (C-6), 152.9 (C-2), 149.8 (C-4), 139.8 (C-8), 119.0 (C-5), 81.6 (C-1′), 56.0 (CH3O), 47.3 (C-2′), 30.4 (C-4′). HRMS (ESI+) m/z: [M + H]+ calcd for C10H14O2N5, 236.1142; found, 236.1140.
N,N’-(9-(1-Ethoxyprop-2-yn-1-yl)-9H-purine-2,6-diyl)diacetamide (36). Treatment of 2,6-bisacetamidopurine (1l, 470 mg, 2.0 mmol) and 3,3-diethoxyprop-1-yne (2r, 256 mg, 2.0 mmol) by synthetic procedure B afforded 36 (210 mg, 31%) as a light brown viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 10.62 (bs, 1H, NH), 10.42 (bs, 1H, NH), 8.53 (s, 1H, H-8), 6.52 (d, J(1′,3′) = 2.1 Hz, 1H, H-1′), 4.11 (d, J(3′,1′) = 2.1 Hz, 1H, H-3′), 3.52–3.64 (m, 2H, O-CH2), 2.34 (s, 3H, CH3-CON), 2.27 (s, 3H, CH3-CON), 1.10 (t, J(CH2,CH3) = 7.0 Hz, 3H, O-CH2-CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 169.8 (CON), 152.8 (C-2 or C-6), 152.1 (C-4), 150.1 (C-2 or C-6), 141.3 (C-8), 119.4 (C-5), 79.5 (C-3′), 77.3 (C-2′), 72.2 (C-1′), 63.7 (O-CH3), 25.0 (CH3-CON), 24.9 (CH3-CON), 14.8 (O-CH2-CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C14H16O3N6Na, 339.1176; found, 339.1176.
2-(4-Chloro-1H-pyrazolo[4,3-c]pyridin-1-yl)-2-ethoxyethyl acetate (37). Treatment of 4-chloro-1H-pyrazolo[4,3-c]pyridine (1m, 306 mg, 2.0 mmol) and acetoxyacetaldehyde dimethyl acetate (2t, 355 mg, 2.0 mmol) by synthetic procedure B afforded 37 (370 mg, 68%) as a brownish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.44 (d, J(7,3) = 0.9 Hz, 1H, H-7), 8.24 (d, J(2,3) = 6.0 Hz, 1H, H-2), 7.93 (dd, J(3,2) = 6.0 Hz, J(3,7) = 1.0 Hz, 1H, H-3), 6.18 (dd, J(1′,2′a) = 6.3 Hz, J(1′,2′b) = 5.5 Hz, 1H, H-1′), 4.58 (dd, J(gem) = 11.4 Hz, J(2′a,1′) = 5.5 Hz, 1H, H-2′a), 4.49 (dd, J(gem) = 11.4 Hz, J(2′b,1′) = 6.3 Hz, 1H, H-2′b ), 3.56 (dq, J(gem) = 9.5 Hz, J(CH2,CH3) = 7.0 Hz, 1H, CH3,CH2a), 3.21 (dq, J(gem) = 9.5 Hz, J(CH2,CH3) = 7.1 Hz, 1H, CH3,CH2b), 1.89 (s, 3H, CH3-COO), 1.03 (t, J(CH3,CH2) = 7.0 Hz, 3H, CH3-CH2). 13C-NMR (125 MHz, DMSO-d6): δ = 169.9 (COO), 144.5 (C-4), 144.0 (C-2), 143.9 (C-6), 134.4 (C-7), 119.9 (C-5), 105.7 (C-3), 85.6 (C-1′), 64.3 (CH2-CH3), 63.3 (C-2′), 20.5 (CH3-COO), 14.8 (CH2-CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C12H15O3N3Cl, 284.0797; found, 284.0797.
Ethyl 4-(4-chloro-1H-imidazo[4,5-c]pyridin-1-yl)-2-cyano-4-ethoxybutanoate (38). Treatment of 4-chloro-1H-imidazo[4,5-c]pyridine (1n, 310 mg, 2.0 mmol) and ethyl 2-cyano-4,4-diethoxybutyrate (2u, 462 mg, 2.0 mmol) by synthetic procedure B afforded 38 (595 mg, 88%) as a yellow viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.68 and 8.67 (s, 1H, H-8), 8.19–8.21 (m, 1H, H-2), 7.77 and 7.72 (d, J(3,2) = 5.6 Hz, 1H, H-3), 5.97–5.93 (m, 1H, H-1′), 4.37–4.46 (m, 1H, H-3′), 4.06–4.25 (m, 2H, COO-CH2), 3.48 (m, 1H, 1′-O-CH2), 3.23 (m, 1H, 1′-O-CH2), 2.55–2.87 (m, 2H, H-2′), 1.02–1.28 (m, 6H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 166.1 (COO), 165.6 (COO), 145.4 and 145.3 (C-8), 141.6 and 141.5 (C-2), 141.5 (C-6), 139.0 and 138.8 (C-4), 137.8 and 137.7 (C-5), 116.7 and 116.6 (CN), 107.8 and 107.7 (C-3), 84.3 and 84.1 (C-1′), 64.7 and 64.4 (1′-O-CH2), 62.7 and 62.6 (COO-CH2), 34.0 and 33.7 (C-3′), 33.6 and 33.2 (C-2′), 14.6, 14.5, 14.1 and 13.9 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C15H18O3N4Cl, 337.1062; found, 337.1062.
2-((1H-1,2,4-Triazol-1-yl)methoxy)ethyl acetate (39). Treatment of 1,2,4-triazole (1o, 138 mg, 2.0 mmol) and 1,3-dioxolane (2g, 148 mg, 0.14 mL, 2.0 mmol) by synthetic procedure B afforded 39 (290 mg, 78%) as a colorless oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.72 (s, 1H, H-5), 8.06 (s, 1H, H-3), 5.57 (s, 2H, N-CH2-O), 4.08 (m, 2H, CH2-OAc), 3.69 (m, 2H, N-CH2-O-CH2), 1.98 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 170.5 (COO), 152.2 (C-3), 145.4 (C-5), 77.4 (N-CH2-O), 67.1 (N-CH2-O-CH2), 62.9 (CH2-OAc), 20.81 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C7H12O3N3, 186.0873; found, 186.0873.
3-((2-Acetoxyethoxy)methyl)thiazol-3-ium trifluoromethanesulfonate (40). Treatment of thiazole (1p, 170 mg, 2.0 mmol) and 1,3-dioxolane (2g, 148 mg, 0.14 mL, 2.0 mmol) by synthetic procedure B and by modified work up (the crude product was purified using C18-silica gel flash chromatography in water to methanol, gradient 0–100%) afforded 40 (330 mg, 47%) as a colorless oil. 1H-NMR (500 MHz, D2O): δ = 10.18 (m, 1H, H-2), 8.47 (dd, J(4,5) = 3.8 Hz, J(4,2) = 1.4 Hz, 1H, H-4), 8.29 (dd, J(5,4) = 3.8 Hz, J(5,2) = 2.5 Hz, 1H, H-5), 5.95 (s, 2H, N-CH2-O), 4.26 (m, 2H, CH2-OAc), 3.94 (m, 2H, CH2-CH2-OAc), 2.08 (s, 3H, CH3). 13C-NMR (125 MHz, D2O): δ = 174.7 (COO), 159.1 (C-2), 136.3 (C-4), 127.2 (C-5), 84.3 (N-CH2-O), 69.6 (CH2-CH2-OAc), 64.1 (CH2-OAc), 20.9 (CH3). HRMS (ESI+) m/z: [M]+ calcd. for C8H12O3NS, 202.0532; found, 202.0533.
1-(((4-Acetoxytetrahydrofuran-3-yl)oxy)methyl)-4-nitro-1H-pyrazole-3-carboxylic acid (41). Treatment of 4-nitro-1H-pyrazole-3-carboxylic acid (1q, 314 mg, 2.0 mmol) and 1,4-anhydro-2,3-O-methylenerythritol (2v, 232 mg, 2.0 mmol) by synthetic procedure B afforded 41 (252 mg, 40%) as a brownish oil. 1H-NMR (500 MHz, DMSO-d6): δ = 9.13 (s, 1H, H-5), 5.10 (td, J(4′,3′) = J(4′,5′a) = 5.4 Hz, J(4′,5′b) = 3.8 Hz, 1H, H-4′), 4.47 (q, J(3′,4′) = J(3′,2′a) = J(3′,2′b) = 5.6 Hz, 1H, H-3′), 3.92 (dd, J(gem) = 10.0 Hz, J(5′a,4′) = 5.5 Hz, 1H, H-5′a), 3.82 (dd, J(gem) = 9.3 Hz, J(2′a,3′) = 6.0 Hz, 1H, H-2′a), 3.64 (dd, J(gem) = 10.0 Hz, J(5′b,4′) = 3.9 Hz, 1H, H-5′b), 3.51 (dd, J(gem) = 9.3 Hz, J(2′b,3′) = 5.5 Hz, 1H, H-2′b), 1.99 (s, 3H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ =170.1 (CH3-COO), 161.7 (COOH), 140.6 (C-3 or C-4), 133.3 (C-3 or C-4), 132.8 (C-5), 81.0 (N-CH2-O), 77.2 (C-3′), 71.8 (C-4′), 70.2 (C-5′), 69.6 (C-2′). HRMS (ESI–) m/z: [M − H]– calcd. for C11H12O8N3, 314.0630; found, 314.0625.
2-((5-Phenyl-1H-tetrazol-1-yl)methoxy)but-3-en-1-yl acetate (42) and 2-((5-phenyl-2H-tetrazol-2-yl)methoxy)but-3-en-1-yl acetate (43). Treatment of 5-phenyl-1H-tetrazole (1r, 292 mg, 2.0 mmol) and 4-vinyl-[1,3]dioxolane (2m, 200 mg, 0.2 mL, 2.0 mmol) by synthetic procedure B afforded 42 (150 mg, 26%) and 43 (121 mg, 21%) as white amorphous solids. Compound 42: 1H-NMR (500 MHz, DMSO-d6): δ = 7.95 (m, 2H, H-2), 7.64–7.70 (m, 3H, H-3 and H-4), 5.92 and 5.85 (2×d, J(gem) = 11.9 Hz, 2×1H, N-CH2-O), 5.75 (ddd, J(CH,CH2) = 17.7 Hz and 10.2 Hz, J(CH,CH) = 6.7 Hz, 1H, CH2 = CH), 5.29–5.33 (m, 2H, CH2=CH), 4.29 (m, 1H,CH-O), 3.97–4.04 (m, 2H, CH2-O), 1.80 (s, 3H, CH3); 13C-NMR (125 MHz, DMSO-d6): δ = 170.3 (COO), 155.2 (N-C-N), 133.2 (CH2 = CH), 132.1 (C-4), 129.8 (C-3), 129.3 (C-2), 123.8 (C-1), 120.4 (CH2 = CH), 77.8 (CH-O), 75.0 (N-CH2-O), 65.2 (CH2-O), 20.8 (CH3). HRMS (ESI+) m/z: [M + Na]+ calcd. for C14H16O3N4Na, 311.1115; found, 311.1113. Compound 43: 1H-NMR (500 MHz, DMSO-d6): δ = 8.10 (m, 2H, H-2), 7.55–7.61 (m, 3H, H-3 and H-4), 6.16 and 6.01 (2×d, J(gem) = 11.4 Hz, 2×1H, N-CH2-O), 5.75 (ddd, J(CH2,CH) = 17.1 Hz and 10.5 Hz, J(CH,CH) = 6.5 Hz, 1H, CH2 = CH), 5.35 (dt, J(CH2b,CH) = 17.3 Hz, J(gem) = 4J(H,H) = 1.4 Hz, 1H, CH2b = CH), 5.27 (dt, J(CH2a,CH) = 10.5 Hz, J(gem) = 4J(H,H) = 1.4 Hz, 1H, CH2a = CH), 4.39 (m, 1H, CH-O), 4.05 (dd, J(gem) = 11.8 Hz, J(CH2,CH) = 3.6 Hz, 1H, COO-CH2b), 3.98 (dd, J(gem) = 11.8 Hz, J(CH2,CH) = 7.2 Hz, 1H, COO-CH2a), 1.85 (s, 3H, CH3); 13C-NMR (125 MHz, DMSO-d6): δ = 170.1 (COO), 164.7 (N-C-N), 133.2 (CH2=CH), 131.0 (C-4), 129.5 (C-3), 126.8 (C-1), 126.7 (C-2), 119.7 (CH2 = CH), 79.3 (N-CH2-O), 78.3 (CH-O), 65.0 (COO-CH2), 20.6 (CH3). HRMS (ESI+) m/z: [M + Na]+ calcd. for C14H16O3N4Na, 311.1115; found, 311.1115.
4-(1H-Benzo[d][1,2,3]triazol-1-yl)-4-methoxybutanenitrile (45). Treatment of benzotriazole (1t, 240 mg, 2.0 mmol) and 3-cyanopropionaldehyde dimethyl acetal (2w, 260 mg, 0.26 mL, 2.0 mmol) by synthetic procedure B afforded 45 (330 mg, 76%) as a brownish oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.11 (dt, J(3′,4′) = 8.4 Hz, J(3′,5′) = J(3′,6′) = 1.0 Hz, 1H, H-3′), 7.95 (dt, J(6′,5′) = 8.4 Hz, J(6′,4′) = J(6′,3′) = 1.0 Hz, 1H, H-6′), 7.60 (ddd, J(5′,6′) = 8.2 Hz, J(5′,4′) = 5.9 Hz, J(5′,3′) = 1.1 Hz, 1H, H-5′), 7.46 (ddd, J(4′,3′) = 8.4 Hz, J(4′,5′) = 6.9 Hz, J(4′,6′) = 1.0 Hz, 1H, H-4′), 6.16 (m, 1H, H-4), 3.15 (s, 3H, OCH3), 2.60–2.69 (m, 3H, H-2 and H-3a), 2.40–2.48 (m, 1H, H-3b). 13C-NMR (125 MHz, DMSO-d6): δ = 145.9 (C-2′), 132.0 (C-1′), 128.2 (C-5′), 124.7 (C-4′), 119.8 (C-3′), 119.7 (CN), 111.3 (C-6′), 88.9 (C-4), 56.3 (OCH3), 29.6 (C-3), 12.9 (C-2). HRMS (ESI+) m/z: [M + Na]+ calcd. for C11H12ON4Na, 239.0903; found, 239.0904.
2-(2-Bromo-1-(6-chloro-9H-purin-9-yl)ethoxy)ethyl pivalate (46). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and pivalic anhydride (3b, 372 mg, 0.41 mL, 2.0 mmol) by synthetic procedure B afforded 46 (414 mg, 51%) as yellowish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.93 (s, 1H, 8), 8.84 (s, 1H, H-2), 6.13 (dd, J(1′,2′a) = 6.9 Hz, J(1′,2′b) = 6.0 Hz, 1H, H-1′), 4.23 (dd, J(gem) = 10.8 Hz, J(2′a,1′) = 6.9 Hz, 1H, H-2′a), 4.16 (dd, J(gem) = 10.8 Hz, J(2′b,1′) = 6.0 Hz, 1H, H-2′b), 4.04–4.14 (m, 2H, CH2-O-CO), 3.86 (ddd, J(gem) = 11.5 Hz, J(CH2a,CH2) = 6.1 Hz and 2.8 Hz, 1H, 1′-O-CH2a), 3.63 (ddd, J(gem) = 11.6 Hz, J(CH2b,CH2) = 6.3 Hz and 2.9 Hz, 1H, 1′-O-CH2b), 1.03 (s, 9H, CH3). 13C-NMR (125 MHz, DMSO-d6): δ = 177.4 (COO), 152.2 (C-2), 152.0 (C-4), 149.7 (C-6), 145.8 (C-8), 131.3 (C-5), 84.2 (C-1′), 67.9 (1′-O-CH2), 62.7 (CH2-O-CO), 31.7 (C-2′), 26.9 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C14H19O3N4BrCl, 405.0324; found, 405.0325.
2-(2-Bromo-1-(6-chloro-9H-purin-9-yl)ethoxy)ethyl benzoate (47). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and benzoic anhydride (3c, 452 mg, 0.38 mL, 2.0 mmol) by synthetic procedure B afforded 47 (332 mg, 39%) as yellowish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.95 (s, 1H, H-8), 8.79 (s, 1H, H-2), 7.77 (m, 2H, H-2″), 7.65 (m, 1H, H-4″), 7.48 (m, 2H, H-3″), 6.19 (dd, J(1′,2′a) = 6.9 Hz, J(1′,2′b) = 6.0 Hz, 1H, H-1′), 4.39 (ddd, J(gem) = 12.3 Hz, J(CH2a,CH2b) = 6.7 Hz, J(CH2a,CH2a) = 2.6 Hz, 1H, 1′-O-CH2-CH2a), 4.30 (ddd, J(gem) = 12.3 Hz, J(CH2b,CH2a) = 5.9 Hz, J(CH2b,CH2b) = 2.6 Hz, 1H, 1′-O-CH2,CH2b), 4.24 (dd, J(gem) = 10.8 Hz, J(2′a,1′) = 6.9 Hz, 1H, H-2′a), 4.03 (dd, J(gem) = 10.8 Hz, J(2′b,1′) = 6.0 Hz, 1H, H-2′b), 4.03 (ddd, J(gem) = 11.7 Hz, J(CH2a,CH2b) = 5.9 Hz, J(CH2a,CH2a) = 2.6 Hz, 1H, 1′-O-CH2a), 3.81 (ddd, J(gem) = 11.7 Hz, J(CH2b,CH2a) = 6.7 Hz, J(CH2b,CH2b) = 2.6 Hz, 1H, 1′-O-CH2b). 13C-NMR (125 MHz, DMSO-d6): δ = 165.7 (COO), 152.2 (C-2), 151.9 (C-4), 149.6 (C-6), 145.8 (C-8), 133.6 (C-4″), 131.3 (C-5), 129.5 (C-1″), 129.2 (C-2″), 128.9 (C-3″), 84.5 (C-1′), 68.0 (1′-O-CH2), 63.6 (1′-O-CH2-CH2), 31.7 (C-2’). HRMS (ESI+) m/z: [M + Na]+ calcd. for C16H14O3N4BrClNa, 446.9830; found, 446.9833.
2-(2-Bromo-1-(6-chloro-9H-purin-9-yl)ethoxy)ethyl(2S)-2-(6-methoxynaphthalen-2-yl)propanoate (49). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and (S,S)-2-(6-methoxynaphthalene-2-yl)propionic anhydride (3e, 890 mg, 2.0 mmol) by synthetic procedure B afforded 49 (214 mg, 20%) as yellowish viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.87 and 8.91 (s, 1H, H-8), 8.83 and 8.83 (s, 1H, H-2), 7.73–7.80 (m, 2H, H-4″ and H-8″), 7.64–7.67 (m, 1H, H-1″), 7.30–7.34 (m, 1H, H-3″), 7.26–7.28 (m, 1H, H-5″), 7.13–7.16 (m, 1H, H-7″), 6.06–6.10 (m, 1H, H-1″), 3.98–4.21 (m, 4H, CH2Br, COO-CH2), 3.58–3.85 (m, 3H, CH3-CH and 1′-O-CH2), 1.41 and 1.40 (2 × d, J(CH3,CH) = 7.1 Hz, 2 × 3H, CH3). 13C-NMR (125 MHz, DMSO-d6) δ = 173.9 (COO), 157.4 (C-6″), 152.3 (C-2), 152.00 and 151.98 (C-4), 149.7 (C-6), 145.8 and 145.7 (C-8), 135.64 and 135.56 (C-2″), 133.5 (C-4″a), 131.3 (C-5), 129.3 (C-8″), 128.58 and 128.56 (C-8″a), 127.20 and 127.17 (C-4″), 126.4 and 126.3 (C-3″), 125.82 and 125.77 (C-1″), 119.0 (C-7″), 105.9 (C-5″), 84.2 and 84.1 (C-1′), 67.7 (1′-O-CH2), 63.2 and 63.1 (COO-CH2), 55.4 (O-CH3), 44.6 and 44.5 (CH3-CH), 31.6 (CH2Br), 18.6 and 18.5 (CH3). HRMS (ESI+) m/z: [M + H]+ calcd. for C23H23O4N4BrCl, 533.0586; found, 533.0587.
2-(2-Bromo-1-(6-chloro-9H-purin-9-yl)ethoxy)ethyl decanoate (51). Treatment of 6-chloropurine (1a, 310 mg, 2.0 mmol), 2-bromomethyl-1,3-dioxolane (2a, 334 mg, 0.21 mL, 2.0 mmol) and decanoyl chloride (3h, 381 mg, 0.42 mL, 2.0 mmol) by synthetic procedure B afforded 51 (332 mg, 35%) as yellow viscous oil. 1H-NMR (500 MHz, DMSO-d6): δ = 8.93 (s, 1H, 8), 8.83 (s, 1H, H-2), 6.13 (dd, J(1′,2′a) = 7.0 Hz, J(1′,2′b) = 5.8 Hz, 1H, H-1′), 4.23 (dd, J(gem) = 10.8 Hz, J(2′a,1′) = 7.0 Hz, 1H, H-2′a), 4.14 (dd, J(gem) = 10.8 Hz, J(2′b,1′) = 5.8 Hz, 1H, H-2′b), 4.09 (ddd, J(gem) = 12.4 Hz, J(CH2a,CH2b) = 6.6 Hz, J(CH2a,CH2a) = 2.8 Hz, 1H, 1′-O-CH2-CH2a), 4.04 (ddd, J(gem) = 12.4 Hz, J(CH2b,CH2a) = 5.7 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, 1′-O-CH2-CH2b), 3.88 (ddd, J(gem) = 11.7 Hz, J(CH2a,CH2b) = 5.7 Hz, J(CH2a,CH2a) = 2.8 Hz, 1H, 1′-O-CH2a), 3.64 (ddd, J(gem) = 11.7 Hz, J(CH2b,CH2a) = 6.6 Hz, J(CH2b,CH2b) = 2.9 Hz, 1H, 1′-O-CH2b), 2.08 (m, 2H, H-2″), 1.15–1.28 (m, 12H, H-4″, H-5″, H-6″, H-7″, H-8″, H-9″), 1.38 (m, 2H, H-3″), 0.84 (t, J(10″,9″) = 7.0 Hz, 3H, H-10″), 13C-NMR (125 MHz, DMSO-d6): δ =172.8 (C-1″), 152.2 (C-2), 152.0 (C-4), 149.6 (C-6), 145.8 (C-8), 131.3 (C-5), 84.3 (C-1′), 68.0 (1′-O-CH2), 62.6 (1′-O-CH2-CH2), 33.4 (C-2″), 31.7 (C-2′), 31.5 (C-8″), 29.0, 28.9 and 28.6 (C-4″, C-5″, C-6″, C-7″), 24.5 (C-3″), 22.3 (C-9″), 14.2 (C-10″). HRMS (ESI+) m/z: [M + H]+ calcd. for C19H29O3N4BrCl, 475.1106; found, 475.1109.
2-(1-Acetoxy-2-bromoethoxy)ethyl acetate (52). A mixture of 2-bromomethyl-1,3-dioxolane (2a, 1.00 g, 6.25 mmol), acetic anhydride (3a, 0.96 g, 0.89 mL, 9.41 mmol) and concentrated H2SO4 (1 drop) was stirred at room temperature overnight. Water (30 mL) was added and the mixture was extracted with chloroform (3 × 30 mL). Combined organic layers were washed with brine (30 mL), dried over MgSO4, and evaporated to give crude 52 (1.2 g, 71%, GC purity 91%) as brown viscous oil. Purification of the crude product using column chromatography on silica gel (DCM/1% methanol, isocratic) afforded pure 52 (0.94 g, 56%) as brownish oil. 1H-NMR (400 MHz, CDCl3) δ = 5.94 (t, J(CH-CH2Br) = 5.3 Hz, 1H, O-CH-O), 4.29–4.16 (m, 2H, CH2-OAc), 3.93 (ddd, J (gem) = 11.4 Hz, J(CH2-CH2) = 5.3 Hz, J(CH2-CH2) = 3.8 Hz, 1H, O-CH2a-CH2-OAc), 3.93 (ddd, J (gem) = 11.5 Hz, J(CH2-CH2) = 5.9 Hz, J(CH2-CH2) = 4.1 Hz, 1H, O-CH2b-CH2-OAc), 3.51–3.34 (m, 2H, CH2-Br), 2.12 (s, 3H, CH3AcO-CH2-CH2), 2.08 (s, 3H, CH3AcO-CH-O). 13C-NMR (100 MHz, CDCl3): δ = 171.0(COO-CH2-CH2), 170.5 (COO-CH-O), 96.2 (O-CH-O), 68.3 (O-CH2-CH2-OAc), 63.2 (O-CH2-CH2-OAc), 31.1 (CH2-Br), 21.1 (CH3AcO), 21.0 (CH3AcO). HRMS (ESI+) m/z: [M + Na]+ calcd. for C8H13O5BrNa, 290.9839; found, 290.9836.