Continued Structural Exploration of Sulfocoumarin as Selective Inhibitor of Tumor-Associated Human Carbonic Anhydrases IX and XII
Abstract
:1. Introduction
2. Results
2.1. Chemistry
2.2. Carbonic Anhydrase Inhibition
- -
- According to the previous reports [31,32,33,35], isoform hCA I was not inhibited by a large number of substituted sulfocoumarins; however, on the other side, the simplest sulfocoumarin as 11, 12, 26, 36 and 37 showed a weak inhibitory potency. It is likely that compounds 36 (KI = 4625 nM) and 37 (KI = 7139 nM) have a low micromolar inhibition due to the presence of the carboxylic acid moiety, which may work by binding to the H2O molecule coordinated with Zn2+ in the active site [45,46].
- -
- Similar to hCA I, for hCA II we did not observe any inhibition by all the substituted sulfocoumarines, except for 9–12, 26, 36 and 37. Compounds 11 and 12 showed a low micromolar inhibition, respectively KI = 2896 nM and KI = 3857 nM, whilst analogs 9 and 10 have the KI in the medium micromolar range, which can likely be associated to the presence of a free phenol moiety on products 11 and 12, which is protected in 9 and 10.
- -
- The target hCA IX resulted in being the most inhibited isoforms by sulfocoumarins reported here. Considering the three different types of products, type 1 shows the most efficient inhibition against this isozyme, with KI values in the low-medium nanomolar range, between 14.3 nM and 97.2 nM. In detail, the first-in-class compound in term of inhibition potency is the number 19, which shows a fluorine atom in para position on the benzyloxy moiety and a methyl group as R1 substituent (KI = 14.3 nM), whilst the elimination of the benzyloxy moiety (10) gives us the less effective compound (KI = 97.2 nM). Interestingly, the general behaviour of these compounds owned on type 1 was that, indeed, the insertion of the methyl group as an R1 substituent produced a worsening of the KI values; in fact, it was demonstrated by products 16 (KI = 68.9 nM) and 17 (KI = 40.2 nM) compared to the corresponding 21 (KI = 89.7 nM) and 22 (KI = 61.4 nM). This rule seems to be broken only by derivatives 18 (KI = 49.8 nM) and 19 (KI = 14.3 nM), which resulted in better inhibitors with respect to analogs 13 (KI = 55.6 nM) and 14 (KI = 22.9 nM). Sulfocoumarines belonging to type 2, even with a benzyloxy moiety, suffered from the addition of a further aromatic ring on the scaffold that improves the steric hindrance on the sulfonate ring, which induced a worsening of the KI values. Indeed, the inhibition constants are in the high nanomolar range, between 615.1 nM and 1286 nM. The best compound result to be 29 (KI = 615.1 nM) with a fluorine atom in meta position on the benzyloxy moiety. The movement of the R1 group from meta to para position produces a worsening of the KI values. Examples are 29 (KI = 615.1 nM) and 31 (KI = 898.1 nM), respectively, with 28 (KI = 754.9 nM) and 30 (KI = 964.7 nM). Interestingly, it is a significant decline of the inhibition data of the sulfocoumarines belonging to type 3, with an amide as linker on position 3 of the sulfonate ring. It is likely that the presence of bulky groups with the CAI portion results in a worsening of the KI values, in a micromolar range between 499.7 nM and 64380 nM. The most potent compounds of this class are 43 (KI = 2429 nM) and the simplest sulfocoumarines 34 (KI = 1631 nM), 35 (KI = 1085 nM), 36 (KI = 499.7 nM) and 37 (KI = 853.7 nM) showed an ester or carboxylic acid moieties in position 3. Sulfocoumarines with a bromine atom in a meta position as the R2 group (40, 45) resulted in the worst values of inhibition, respectively KI = 40,840 nM and 64,380 nM. The hCA XII resulted in becoming the second most efficiently inhibited isoform by sulfocoumarines, with it being particularly possible to observe a similar trend of the KI values as already shown for the hCA IX. Considering products belonging to type 1, they show the most potent inhibition for this isoform, between 8.6 nM and 136.0 nM. The presence of a methyl group in R1 position produced an improvement of the KI values for derivatives 18 (KI = 8.6 nM), without substituent on the benzyloxy moiety, and 20 (KI = 25.7 nM), with fluorine in the meta position. For all the other products, a worsening of Ki values, such as for 14 (KI = 19.2 nM) and 19 (KI = 41.7 nM), or for 11 (KI = 42.5 nM) and 12 (KI = 55.0 nM), was observed. On the other side, the movement of the fluorine atom from meta to para position (19) resulted in a KI value of 41.7 nM. Regarding the nitro group, compound 17 (KI = 77.5 nM) with R2 group in a meta position show an improvement in term of inhibition than its analogue 16 (KI = 94.7 nM) with R2 group in a para position. For sulfocoumarines 18–22, the fluorine atom resulted in being better than nitro group as a substituent on the benzyloxy moiety; indeed, 19 (KI = 41.7 nM) and 20 (KI = 25.7 nM) are strongest inhibitors in term of potency than 21 (KI = 100.8 nM) and 22 (KI = 136.0 nM). For compounds belonging to type 2, the addition of an aromatic ring on the sulfocoumarin scaffold determines a worsening of the KI values in the medium–high nanomolar range, between 414.2 nM and 1369 nM. The presence of a bulky group such as the nitro group leads to a worsening in terms of inhibition potency, particularly products 30 and 31 have KI of 1056 nM and 1369 nM. The simplest sulfocoumarin with a free phenol moiety, 26, showed the best inhibition for type 2 series, 414.2 nM. Sulfocoumarins belonging to type 3 that present a further enhancement of the steric hindrance on the sulfonate ring, have KI values in the range of micromolar (KI = 408.2–78,320 nM). Compound 40 and 45, with a bromine atom in the meta position, show the worst inhibition potencies on hCA XII, respectively 78,320 nM and 76,540 nM; on the other side, sulfocoumarines with the less bulky group in R2 position result in being a good inhibitor on this isoform, while, indeed, 38 and 43 with a hydrogen atom show KI values in the range of low micromolar—respectively, 2301 nM and 1594 nM. The best inhibitors belonging to the type 3 series are compounds 36 (KI = 563.7 nM) and 37 (KI = 408.2 nM), likely thanks to the free carbocylic acid moiety.
3. Materials and Methods
3.1. Chemistry
3.2. Carbonic Anhydrase Inhibition
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Cmpd | KI (nM) a,b | |||||
---|---|---|---|---|---|---|
R1 | R2 | CA I | CA II | CA IX | CA XII | |
9 | H | OCH3 | >100,000 | 15,360 | 74.9 | 61.4 |
10 | CH3 | OCH3 | >100,000 | 8814 | 97.2 | 73.9 |
11 | H | H | 16,538 | 2896 | 55.8 | 42.5 |
12 | CH3 | H | 9961 | 3857 | 81.7 | 55.0 |
13 | H | H | >100,000 | >100,000 | 55.6 | 28.3 |
14 | H | 4-F | >100,000 | >100,000 | 22.9 | 19.2 |
15 | H | 3-F | >100,000 | >100,000 | 28.4 | 46.0 |
16 | H | 4-NO2 | >100,000 | >100,000 | 69.8 | 94.7 |
17 | H | 3-NO2 | >100,000 | >100,000 | 40.2 | 77.5 |
18 | CH3 | H | >100,000 | >100,000 | 49.8 | 8.6 |
19 | CH3 | 4-F | >100,000 | >100,000 | 14.3 | 41.7 |
20 | CH3 | 3-F | >100,000 | >100,000 | 33.2 | 25.7 |
21 | CH3 | 4-NO2 | >100,000 | >100,000 | 89.7 | 100.8 |
22 | CH3 | 3-NO2 | >100,000 | >100,000 | 61.4 | 136.0 |
25 | OCH3 | - | >100,000 | >100,000 | 1286 | 965.8 |
26 | H | - | 42650 | 8997 | 558.9 | 414.2 |
27 | H | - | >100,000 | >100,000 | 680.5 | 910.7 |
28 | 4-F | - | >100,000 | >100,000 | 754.9 | 653.8 |
29 | 3-F | - | >100,000 | >100,000 | 615.1 | 566.4 |
30 | 4-NO2 | - | >100,000 | >100,000 | 964.7 | 1056 |
31 | 3-NO2 | - | >100,000 | >100,000 | 898.1 | 1369 |
34 | H | CH2CH3 | >100,000 | >100,000 | 1631 | 2594 |
35 | OCH3 | CH2CH3 | >100,000 | >100,000 | 1085 | 1528 |
36 | H | H | 4625 | 996.5 | 499.7 | 563.7 |
37 | OCH3 | H | 7139 | 728.1 | 853.7 | 408.2 |
38 | H | H | >100,000 | >100,000 | 3288 | 2301 |
39 | H | 4-Br | >100,000 | >100,000 | 34,350 | 58,980 |
40 | H | 3-Br | >100,000 | >100,000 | 40,840 | 78,320 |
41 | H | 4-OCH3 | >100,000 | >100,000 | 8231 | 8550 |
42 | H | 3-OCH3 | >100,000 | >100,000 | 5424 | 3380 |
43 | OCH3 | H | >100,000 | >100,000 | 2429 | 1594 |
44 | OCH3 | 4-Br | >100,000 | >100,000 | 51,460 | 42,520 |
45 | OCH3 | 3-Br | >100,000 | >100,000 | 64,380 | 76,540 |
46 | OCH3 | 4-OCH3 | >100,000 | >100,000 | 4367 | 6547 |
47 | CH3 | 3-OCH3 | >100,000 | >100,000 | 6558 | 2469 |
AAZ | - | - | 250 | 12.0 | 25.0 | 5.7 |
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Giovannuzzi, S.; Capasso, C.; Nocentini, A.; Supuran, C.T. Continued Structural Exploration of Sulfocoumarin as Selective Inhibitor of Tumor-Associated Human Carbonic Anhydrases IX and XII. Molecules 2022, 27, 4076. https://doi.org/10.3390/molecules27134076
Giovannuzzi S, Capasso C, Nocentini A, Supuran CT. Continued Structural Exploration of Sulfocoumarin as Selective Inhibitor of Tumor-Associated Human Carbonic Anhydrases IX and XII. Molecules. 2022; 27(13):4076. https://doi.org/10.3390/molecules27134076
Chicago/Turabian StyleGiovannuzzi, Simone, Clemente Capasso, Alessio Nocentini, and Claudiu T. Supuran. 2022. "Continued Structural Exploration of Sulfocoumarin as Selective Inhibitor of Tumor-Associated Human Carbonic Anhydrases IX and XII" Molecules 27, no. 13: 4076. https://doi.org/10.3390/molecules27134076
APA StyleGiovannuzzi, S., Capasso, C., Nocentini, A., & Supuran, C. T. (2022). Continued Structural Exploration of Sulfocoumarin as Selective Inhibitor of Tumor-Associated Human Carbonic Anhydrases IX and XII. Molecules, 27(13), 4076. https://doi.org/10.3390/molecules27134076