Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors
Abstract
:1. Introduction
2. Results and Discussion
2.1. Chemistry
2.2. In Vitro α-Glucosidase Inhibition
2.3. In Vitro α-Amylase Inhibition
2.4. Enzymatic Kinetic Study
2.5. Evaluation of Antioxidant Activity
2.6. Molecular Docking Analysis
2.7. Prediction of Drug-like Properties
2.8. Prediction of Druglikeness, ADME Properties, and Toxicity
3. Materials and Methods
3.1. General Information
3.2. Chemistry
- General method for preparing 2-alkoxy-substituted xanthones 6a–d
- General method for preparing imidazole-substituted xanthones 10a–f
- General procedure for preparing 2-alkoxy-substituted xanthones 11a–b
- General procedure for preparing imidazole-substituted xanthones 12a–f
3.3. Biological Evaluation
3.3.1. α-Glucosidase Inhibition Assay
3.3.2. α-Amylase Inhibition Assay
3.3.3. Kinetic Study
3.4. DPPH Radical Scavenging Assay
3.5. Docking Studies
3.6. Physicochemical Properties
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Compounds | % DPPH Scavenging Activity (2.5 mM) | α-Glucosidase | α-Amylase | ||
---|---|---|---|---|---|
Inhibition (%) at 400 µM | IC50 (µM) | Inhibition (%) at 100 µM | IC50 (µM) | ||
1 | 32.6 ± 2.03 C | 26.5 ± 0.81 | >400 A | 98.7 ± 0.11 | 26.5 ± 0.01 E |
5 | 13.9 ± 1.14 E,F | 15.2 ± 0.16 | >400 A | NI | - |
6a | 1.7 ± 0.91 H,I | 99.5 ± 0.2 | 143.6 ± 0.17 H | 8.7 ± 0.2 | >200 A* |
6b | 11.8 ± 1.07 F,G | 9.3 ± 0.1 | >400 A | NA | - |
6c | 8.7 ± 0.67 G | 92.6 ± 0.11 | 16.0 ± 0.03 N | 64.8 ± 0.15 | 76.7 ± 0.03 B |
6d | 3.9 ± 0.58 H,I | 22.1 ± 1.04 | >400 A | NI | - |
6e | 10.4 ± 0.83 F,G | 98.6 ± 0.90 | 12.8 ± 0.01 O | 60.3 ± 0.1 | 68.1 ± 0.04 D |
7 | 45.9 ± 2.89 B† | 75.5 ± 0.50 | 196.4 ± 0.07 F | 7.8 ± 0.1 | >200 A |
8 | 1.9 ± 0.73 H,I | 38.3 ± 0.04 | >400 A | NI | - |
9a | 19.5 ± 1.22 D | 97.8 ± 0.3 | 40.0 ± 0.018 M | 62.9 ± 0.2 | 73.5 ± 0.04 C |
9b | 17.6 ± 1.17 D | 96.3 ± 0.2 | 4.00 ± 0.007 P | 3.87 ± 0.11 | >200 A |
10a | 0.8 ± 0.01 I | 1.3 ± 0.01 | >400 A | NI | - |
10b | 12.2 ± 0.08 F,G | 90.2 ± 0.21 | 212.4 ± 0.1 D | 9.7 ± 0.21 | >200 A |
10c | 11.6 ± 1.54 F,G | 95.1 ± 0.15 | 232.7 ± 0.11 C | 99.5 ± 0.10 | 5.4 ± 0.07 H |
10d | 5.1 ± 0.08 H | 2.5 ± 0.01 | >400 A | NI | - |
10f | 11.2 ± 1.02 F,G | 99.4 ± 0.51 | 145.2 ± 0.17 G | 93.3 ± 0.12 | 8.7 ± 0.06 G |
11a | 19.8 ± 1.04 D | 0.48 ± 0.02 | >400 A | NI | - |
11b | 18.4 ± 1.43 D | 99.7 ± 0.29 | 120.0 ± 0.03 I | 7.8 ± 0.5 | >200 A |
12a | 1.1 ± 0.01 I | 1.87 ± 0.47 | >400 A | NI | - |
12b | 16.3 ± 1.45 D,E | 84.9 ± 0.57 | 112.8 ± 0.12 J | 8.7 ± 0.81 | >200 A |
12c | 19.0 ± 0.22 D | 97.5 ± 1.78 | 210.9 ± 0.33 E | 3.9 ± 0.55 | >200 A |
12d | 10.1 ± 0.87 G | 52.2 ± 0.87 | 400.2 ± 0.24 A | 1.5 ± 0.10 | >200 A |
12e | 17.6 ± 1.14 D | 96.6 ± 1.45 | 104.9 ± 0.01 K | 2.4 ± 0.15 | >200 A |
12f | 18.1 ± 1.57 D | 99.1 ± 1.31 | 71.9 ± 0.08 L | 4.7 ± 0.32 | >200 A |
BHT | 85.2 ± 3.33 A‡ | ND | ND | ND | ND |
Acarbose | ND | 63.18 ± 0.7 | 306.7 ± 0.9 B | 99.3 ± 0.06 | 20.0 ± 0.07 F |
Compound | Binding Energy ΔG (kcal/mol) | Interacting Residues | Polar Interactions | Hydrophobic Interactions |
---|---|---|---|---|
14 | −7.78 | Asp69, Tyr72, His112, Tyr158, Phe159, Phe178, Arg213, Asp215, Val216, Glu277, Gln279, His280, Phe303, Asp307, Arg315, Tyr316, His351, Asp352, Gln353, Glu411, Arg442, Arg446 | C-H…..O (Asp69) O-H….O (Aps215) O…..H-N (Gln279) O-H…..O (Asp307) O…..H-N (His351) O-H…..O (Glu411) O…..H-N (Arg446) | - |
6c | −9.17 | Tyr72, His112, Val216, Gln279, Phe303, Arg315, Asp352, Glu411, Arg442 | O…..H-N (Gln279) C-H…..O (Asp352) O…..C-H (Arg442) | π-alkyl-Tyr72, His112, Phe178, Val216 π-sigma-Arg315 π-cation-Arg315 π-anion-Asp352 |
6e | −9.41 | Tyr72, His112, Val216, Gln279, Arg315, Asp352, Arg442 | O…..H-N (Gln279) C-H…..O (Asp352) | π-alkyl-Tyr72, His112, Val216, Arg315 π-π T-shaped-Tyr72 π-π stacked-Phe303 π-cation-Arg442 π-anion-Asp215, Glu277, Glu411 |
9b | −7.89 | Tyr158, Phe303, Thr310, Arg315, Asp352, Glu411, Arg442 | Halogen (Thr310) O…..C-H (Arg315) C-H…..O (Glu411) | π-π T-shaped-Tyr158 π-alkyl-Phe303 alkyl-Arg315 π-cation-Arg442 π-anion-Asp352, Glu411 |
Compound | Binding Energy ΔG (kcal/mol) | Interacting Residues | Polar Interactions | Hydrophobic Interactions |
---|---|---|---|---|
14 | −2.92 | Asp197, Glu233, Asp300, His305 | O-H……O (Asp197) O-H……O (Glu233) C-H……O (Glu233) O-H……O (Asp300) C-H……O (Asp300) O……H-N (His305) | - |
1 | −6.08 | Trp59, Tyr62, Asp197, Glu233, His299, Asp300 | O-H……O (Asp197) C-H……O (Glu233) C-H……O (Asp300) | π-π stacked-Trp59, Tyr62 π-alkyl-His299 |
10c | −9.82 | Trp59, Tyr62, His101, Leu162, Asp197, Ala198, His299, Asp300, His305 | C-H……O (Asp197) C-H……O (His299) C-H……O (Asp300) | π-π stacked-Trp59, Tyr62 π-alkyl-His101 alkyl-Leu162 π-anion-Asp300 |
10f | −9.66 | Trp59, Tyr62, Tyr151, Leu162, Leu165, Asp197, Ala198, Lys200, His201, Ile235 | C-H……O (Asp197) | π-π stacked-Tyr62, Tyr151 π-π T-shaped-His201 π-alkyl-Trp59, Tyr62, Leu162, Ala198, His201, Ile235 alkyl-Ala198, Lys200, Ile235 π-sigma-Leu162, Leu165 |
Druglikeness/ ADMET a | Compound | |||||
---|---|---|---|---|---|---|
6c | 6e | 9a | 9b | 10c | 10f | |
Rule of five | Suitable | Suitable | Suitable | Suitable | Suitable | Violated |
Caco-2 | 35.309 | 42.1566 | 24.2146 | 25.8108 | 53.5637 | 54.9387 |
HIA | 97.407182 | 97.510585 | 97.571763 | 97.757187 | 97.688197 | 97.911873 |
BBB | 0.924897 | 0.355946 | 0.092018 | 0.282953 | 0.077422 | 0.105351 |
Skin permeability | −2.79698 | −2.25319 | −2.84173 | −2.30488 | −2.76965 | −2.19626 |
Ames test | Mutagen | Non-mutagen | Mutagen | Non-mutagen | Non-mutagen | Non-mutagen |
Carcino mouse | Negative | Negative | Negative | Negative | Negative | Negative |
Carcino rat | Negative | Negative | Positive | Positive | Negative | Negative |
hERG inhibition | Medium risk | Medium risk | Medium risk | Medium risk | Medium risk | Medium risk |
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Aguila-Muñoz, D.G.; Vázquez-Lira, G.; Sarmiento-Tlale, E.; Cruz-López, M.C.; Jiménez-Montejo, F.E.; López y López, V.E.; Escalante, C.H.; Andrade-Pavón, D.; Gómez-García, O.; Tamariz, J.; et al. Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules 2023, 28, 4180. https://doi.org/10.3390/molecules28104180
Aguila-Muñoz DG, Vázquez-Lira G, Sarmiento-Tlale E, Cruz-López MC, Jiménez-Montejo FE, López y López VE, Escalante CH, Andrade-Pavón D, Gómez-García O, Tamariz J, et al. Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules. 2023; 28(10):4180. https://doi.org/10.3390/molecules28104180
Chicago/Turabian StyleAguila-Muñoz, Dolores G., Gabriel Vázquez-Lira, Erika Sarmiento-Tlale, María C. Cruz-López, Fabiola E. Jiménez-Montejo, Víctor E. López y López, Carlos H. Escalante, Dulce Andrade-Pavón, Omar Gómez-García, Joaquín Tamariz, and et al. 2023. "Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors" Molecules 28, no. 10: 4180. https://doi.org/10.3390/molecules28104180
APA StyleAguila-Muñoz, D. G., Vázquez-Lira, G., Sarmiento-Tlale, E., Cruz-López, M. C., Jiménez-Montejo, F. E., López y López, V. E., Escalante, C. H., Andrade-Pavón, D., Gómez-García, O., Tamariz, J., & Mendieta-Moctezuma, A. (2023). Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules, 28(10), 4180. https://doi.org/10.3390/molecules28104180