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Article

Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors

by
Dolores G. Aguila-Muñoz
1,
Gabriel Vázquez-Lira
1,
Erika Sarmiento-Tlale
1,
María C. Cruz-López
1,
Fabiola E. Jiménez-Montejo
1,
Víctor E. López y López
1,
Carlos H. Escalante
2,
Dulce Andrade-Pavón
3,4,
Omar Gómez-García
2,
Joaquín Tamariz
2 and
Aarón Mendieta-Moctezuma
1,*
1
Centro de Investigación en Biotecnología Aplicada, Instituto Politécnico Nacional, Carretera Estatal Santa Inés Tecuexcomax-Tepetitla, Km 1.5, Tepetitla de Lardizábal, Tlaxcala 90700, Mexico
2
Departamento de Química Orgánica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prol. Carpio y Plan de Ayala S/N, Mexico City 11340, Mexico
3
Departamento de Fisiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Av. Wilfrido Massieu S/N, Mexico City 11340, Mexico
4
Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prol. Carpio y Plan de Ayala S/N, Mexico City 11340, Mexico
*
Author to whom correspondence should be addressed.
Molecules 2023, 28(10), 4180; https://doi.org/10.3390/molecules28104180
Submission received: 15 April 2023 / Revised: 11 May 2023 / Accepted: 15 May 2023 / Published: 18 May 2023

Abstract

:
Current antidiabetic drugs have severe side effects, which may be minimized by new selective molecules that strongly inhibit α-glucosidase and weakly inhibit α-amylase. We have synthesized novel alkoxy-substituted xanthones and imidazole-substituted xanthones and have evaluated them for their in silico and in vitro α-glucosidase and α-amylase inhibition activity. Compounds 6c, 6e, and 9b promoted higher α-glucosidase inhibition (IC50 = 16.0, 12.8, and 4.0 µM, respectively) and lower α-amylase inhibition (IC50 = 76.7, 68.1, and >200 µM, respectively) compared to acarbose (IC50 = 306.7 µM for α-glucosidase and 20.0 µM for α-amylase). Contrarily, derivatives 10c and 10f showed higher α-amylase inhibition (IC50 = 5.4 and 8.7 µM, respectively) and lower α-glucosidase inhibition (IC50 = 232.7 and 145.2 µM, respectively). According to the structure–activity relationship, attaching 4-bromobutoxy or 4′-chlorophenylacetophenone moieties to the 2-hydroxy group of xanthone provides higher α-glucosidase inhibition and lower α-amylase inhibition. In silico studies suggest that these scaffolds are key in the activity and interaction of xanthone derivatives. Enzymatic kinetics studies showed that 6c, 9b, and 10c are mainly mixed inhibitors on α-glucosidase and α-amylase. In addition, drug prediction and ADMET studies support that compounds 6c, 9b, and 10c are candidates with antidiabetic potential.

1. Introduction

Diabetes mellitus is a metabolic disorder with increasing prevalence. This disease now afflicts about 537 million people worldwide according to the International Diabetes Federation, and thus represents a public health problem [1]. It is characterized by hyperglycemia stemming from congenital or acquired insulin secretion deficiency. The best therapeutic approach known to date consists of inhibiting intestinal enzymes responsible for carbohydrate hydrolysis, such as α-amylase and α glucosidase. Of the commercially available antidiabetic drugs, α-glucosidase inhibitors capable of acting in the intestine seem to be most effective for reducing postprandial hyperglycemia [2].
α-Amylase is an enzyme (EC. 3.2.1.1) secreted by the pancreas and salivary glands that hydrolyzes α-linked polysaccharides (e.g., starch and glycogen) to maltose [3]. α-Glucosidase (EC. 3.2.1.20), an enzyme found in the small intestine, catalyzes the cleavage of the α-1,4-glycosidic bonds of maltose to form glucose [4]. Currently, antidiabetic α-amylase and α-glucosidase inhibitors (e.g., acarbose, miglitol, and voglibose) are based on carbohydrate-related structures and are effective. However, their use is limited by the adverse effects of flatulence, abdominal pain, and diarrhea, which could result from the fermentation of undigested carbohydrates derived from the strong inhibition of α-amylase [5,6,7]. Therefore, it is desirable to design new selective molecules with strong inhibition of α-glucosidase and weak inhibition of α-amylase to minimize side effects.
Several heterocyclic compounds containing oxygen and nitrogen are relevant for designing and developing new drugs. For instance, xanthone is a dibenzo-γ-pyrone heterocycle that has drawn the attention of researchers due to its broad spectrum of biological activity [8,9,10,11]. Xanthone derivatives are oxygenated heterocyclic compounds that occur as secondary metabolites in some families of higher plants (Guttiferae, Gentianaceae, Moraceae, Clusiaceae, and Polygalaceae). Prenylated xanthones such as α-mangostin (Figure 1) exhibit a broad spectrum of biological activity, such as antimicrobial [12,13], antioxidant [14], antiviral [8], and anticancer properties [15,16], and also express multiple target proteins [17,18,19,20,21]. The functionalization of α-mangostin has led to antimicrobial and anticancer agents with significantly improved pharmacological properties [16,22,23,24,25].
The functionalization of xanthones as α-glucosidase inhibitors has revealed the key factors involved in their observed inhibitory activity: the formation of an H-bond, hydrophobic groups with a π-conjugated system, and flexibility in conformation [21,26]. This is the case of 2-hydroxy-3-methoxyxanthone 1 (Figure 1), a natural product found in plants of the genus Hypericum (Clusiaceae), which exhibits anticancer properties [27,28,29]. Thus, it would be interesting to use this compound as a molecular platform to generate new derivatives with potential pharmaceutical applications.
On the other hand, imidazole-containing heterocycles exhibit anticancer [10,30], antimicrobial [31,32,33], anti-inflammatory [34], and antidiabetic properties [35,36,37,38,39,40]. The functionalization of the imidazole scaffold with aryl substituents has significantly improved the inhibitory effect on α-glucosidase [37,38,41,42,43,44]. Hence, compounds designed with an imidazole ring on the xanthone framework may exert an important inhibitory effect on α-amylase and α-glucosidase (Figure 1).
Based on the aforementioned observations, the aim of the current contribution was to synthesize novel alkoxy-substituted xanthone derivatives and imidazole-substituted xanthones and test their potential as α-amylase and α-glucosidase inhibitors. Three structural elements were considered presently: (i) a natural xanthone core as an antidiabetic pharmacophore fragment, (ii) alkoxy groups substituted with a π-system or imidazolyl rings with drug-like properties, and (iii) a medium-chain alkoxy group to enhance lipophilicity. Compounds containing these elements were evaluated for their in vitro activity as α-amylase and α-glucosidase inhibitors. Moreover, in silico studies were performed to gain insight into the interaction of the compounds with the active site of α-amylase and α-glucosidase enzymes.

2. Results and Discussion

2.1. Chemistry

The synthetic pathways of alkoxy-substituted xanthone derivatives 5, 6a–d, 7, and 8 (Scheme 1) started from the acylation of phenol 2 with 2-iodobenzoyl chloride in the presence of boron trifluoride diethyl etherate, thus obtaining benzophenone 3a. The latter compound was O-alkylated by a reaction with methyl 2-bromoacetate (4a) to afford 3b, which was treated with N,N-dimethylformamide dimethyl acetal (DMFDMA) (4.0 mol equiv.) at 120 °C to provide the corresponding xanthonyl enaminone 5 and xanthone 6a in low to moderate yields. This pathway involves a cascade reaction that possibly occurs through intramolecular cyclization followed by condensation with DMFDMA. Xanthone 1 was obtained by the cyclization of the benzophenone intermediate 3a with a solution of KOH in water at 100 °C for 6 h [45]. Alkylation of compound 1 with α-halocarbonyls 4a–c or allyl bromide (4d) in the presence of K2CO3 produced alkoxy-substituted xanthones 6a–d in high yields (Scheme 1). The oxyallyl xanthone 6d was subjected to a Claisen rearrangement to furnish allylhydroxy-substituted xanthone 7 in excellent yield. 2-Hydroxyxanthone 1 was also reacted with 1,1-diethoxy-3-methylbut-2-ene in the presence of 3-methylpicoline, leading to pyranoxanthone 8 in modest yield.
The two series of imidazole-substituted xanthones 10a–f and 12a–f were prepared by attaching imidazoles to the xanthones 9a–b and 11a–b, respectively. Firstly, alkylation of the phenoxy group of xanthones 1 and 7 with 1,4-dibromobutane under base conditions generated xanthones 9a–b in excellent yields. Substitution of the bromine atom by the 2-substituted imidazoles 13a–c resulted in the corresponding imidazole-substituted xanthones 10a–f in moderate to good yields [22].
For 12a–b, the intermediate epoxides 11a–b were formed by alkylation of 1 and 7 with epichlorohydrin in ethanol in the presence of KOH. The epoxide ring of derivatives 11a–b was opened with imidazoles 13a–c in methanol to convert them into the respective compounds 12a–f in moderate to good yields [25]. The alkylation of 7 with α-halocarbonyl 4c delivered alkoxy-substituted xanthone 6e in excellent yield (Scheme 2).
All the synthesized compounds were fully characterized by 1H-NMR, 13C-NMR, and HRMS. In the 1H-NMR spectra, for compounds 6a–e, the methylene protons of the acetophenone moiety appeared as a singlet at 4.74–5.74 ppm. For compounds 10a–f, the methylene protons adjacent to the nitrogen atom of the butoxyimidazole moiety were observed as triplets at 4.03–4.22 ppm, while compounds 12a–f were observed as a doublet of doublets at 4.06–4.22 ppm. All the peak values from 6.84–8.32 ppm were assigned to aromatic protons. In the 13C-NMR spectra, the carbonyl groups of xanthone and acetophenone appeared at 174.5–175.9 and 193.3–203.7 ppm, respectively.
In the case of xanthonyl enaminone 5, a single stereoisomer was obtained, and its Z geometry was established by NOE experiments. Irradiation of the signal assigned to the methyl protons of the dimethylamine group produced the enhancement of the signal corresponding to the aryloxy ring of the xanthone scaffold. This stereoselectivity has been observed in similar systems, probably because of the greater stability of the planar π-conjugated acrylate system when the bulky dimethylamine group is located at the opposite side of the double bond [46].

2.2. In Vitro α-Glucosidase Inhibition

After testing each compound for its inhibitory effect on α-glucosidase, this result was compared to the effect of acarbose (14), an antidiabetic drug known to inhibit the α-glucosidase and α-amylase enzymes [6]. Initially, the compounds were evaluated at 400 µM. Structurally, alkoxy-substituted xanthones were divided into two groups based on the nature of the alkoxy chain substituents at the C-1 and/or C-2 positions of the xanthone core: (1) substituted alkoxy derivatives 5, 6a–e, 8, 9a–b, and 11a–b and (2) substituted imidazolyl derivatives 10a–f and 12a–f. Xanthone 1 at 400 µM exhibited weak inhibitory activity on α-glucosidase (Table 1), as did 6a (with a 2-oxyacetate substituent at the 2-hydroxy group). An insertion of the (4-chlorophenyl)-2-oxoethoxy substituent afforded 6c, increasing the inhibitory effect (IC50 = 143.6 ± 0.17 µM for 6a and IC50 = 16.0 ± 0.03 µM for 6c). Contrarily, the presence of an α-acetonyl or allyl group (6b and 6d) resulted in a weak inhibition effect. Similarly, a significant decrease in inhibitory activity was found with 5, formed by the attachment of an enaminone moiety to the 2-oxyacetate group of 6a.
Interestingly, 7 (with an allyl group at the C-1 position) generated a greater inhibitory effect on α-glucosidase (IC50 = 196.4 ± 0.07 µM) than its analogs 1 and 8. The alkoxy-substituted xanthone derivatives 6e, 9a–b, and 11a–b were examined to clarify the role of the allyl group, which in 9b provided the most potent inhibitory activity (IC50 = 4.00 ± 0.007 µM). The introduction of an imidazole ring instead of the bromine group at the C-4 position of the chain in 9b furnished compounds 10a–d and 10f, resulting in a significant decrease in the inhibitory effect. Regarding the imidazolyl-substituted xanthones series 12a–f, 12b and 12e (with a phenyl group in the 2-imidazole ring) showed higher inhibitory activity (IC50 = 112.8 ± 0.12 µM and 104.9 ± 0.01 µM, respectively) than 12a and 12d. According to the results, the introduction of the imidazolyl group had no significant effect on activity since almost all the products (10a–d, 10f, and 12a–e) are less effective than their intermediates (9a–b and 10a–b).
In summary, the inhibition of α-glucosidase produced by acarbose (14, the reference drug) was significantly improved when a phenyl or aryl ring was present at the C-2 side chain combined with the 2-substituted imidazole ring of the xanthone core, leading to 6c, 6e, 9a–b, 12b, and 12f. Considering structural similarities among other molecules, inhibition was much stronger for those containing the C-1 allyl group (7, 9b, and 11b). The data suggest that a molecule with an allyl or substituted aryl group has better affinity for the amino acid residues of the α-glucosidase enzyme and thus enhanced bioactivity, which owes itself to π-sticking or hydrophobic effects [11,21,37], as well as interactions with the halogen atoms substituted at the phenyl groups or at the alkyl side chain [36,38,47].

2.3. In Vitro α-Amylase Inhibition

All compounds evaluated on α-glucosidase were tested for their capacity to diminish α-amylase activity (Table 1). The compounds were evaluated at 100 µM. Natural xanthone 1 without any substituent modification at the C-2 position exerted very strong inhibition of α-amylase. The incorporation of a 2-oxyacetate group at C-2 in compound 6a did not show activity. A limited inhibitory effect was observed with the insertion of a (4-chlorophenyl)-2-oxoethoxy substituent in compound 6c or a 4-bromobutoxy substituent in compound 9a. The IC50 value was higher for 6c and 9a than for acarbose (14), indicating a lower inhibitory effect for these two compounds. No inhibitory activity was detected for 7 with an allyl group at the C-1 position, while a small inhibitory effect was found for 6e, which was prepared by introducing a (4-chlorophenyl)-2-oxoethoxy substituent at C-2. There was limited inhibitory activity with 9a and sharply increased activity when the bromine atom at the side chain of this analogue was replaced by a 2-(4-chlorophenyl)imidazol-1-yl group to provide 10c.
This increase also occurred for 10f. On the other hand, the introduction of an additional OH group at the alkoxy side chain of compounds 12a–f led to an absence of inhibitory activity.
In summary, greater inhibition of α-glucosidase and lesser inhibition of α-amylase were achieved by the incorporation of a (4-chlorophenyl)-2-oxoethoxy moiety (6c and 6e) and 4-bromobutoxy (9b) at C-2 of the xanthone scaffold. In contrast, the lowest inhibition of α-glucosidase and highest inhibition of α-amylase were found with natural xanthone 1 and with the addition of the 4-(2-(4-chlorophenyl)imidazol-1-yl)butoxy moiety (i.e., 10c and 10f). Considering the aforementioned desirability of a low inhibitory effect on α-amylase (to avoid gastrointestinal side effects) together with potent inhibitory activity on α-glucosidase, compounds 6c, 6e, and 9b are promising candidates for the development of antidiabetic drugs.

2.4. Enzymatic Kinetic Study

In order to explore the interaction mechanism of alkoxy-xanthones 6c, 9b, and 10c, the type of inhibition exhibited by these selective inhibitors was analyzed using Lineweaver–Burk plots (double reciprocal). The X-axis values represent the reciprocal for the α-glucosidase substrate, p-nitrophenyl-α-D-glucopyranoside (p-NPG), while for the α-amylase substrate they represent starch, thus being 1/(starch). The Y-axis values are the reciprocal of the reaction velocity (Vo), thus being 1/Vo. Given that the plots did not intersect the X- or Y-axis, the inhibition of α-glucosidase exerted by these compounds is carried out in mixed mode (Figure 2A). The KI values of 6c, 9b, and 10c are 21.5, 1.25, and 139.0 µM, respectively. The KI values for these compounds are less than Km, indicating that they have a higher affinity for the enzyme than the substrate used in the assay [48].
The amylase plots made it possible to determine that compound 6c is a competitive type of inhibitor, while 10c is a mixed-type inhibitor. The KI values of 6c and 10c are 63.2 and 2.2 µM, respectively (Figure 2B). These KI values indicate that 6c has greater affinity for the enzyme.

2.5. Evaluation of Antioxidant Activity

Since antioxidants contribute to the prevention of diabetes mellitus and other diseases [49], the antioxidant potential of the synthesized compounds was determined. The capacity for free radical scavenging was assessed by means of the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical method, with butylhydroxytoluene (BHT) as the positive control. A decrease in color intensity represents the scavenging of DPPH (Table 1), which was calculated as a percentage. The alkoxy-substituted xanthones 6a–e, 9a–b, and 11a–b, as well as imidazole-substituted xanthones 10a–f and 12a–f, did not show any significant antiradical activity even at the maximum concentration tested. Only compounds 1 and 7 were able to scavenge DPPH to some extent (ca. 33% and 46% at 2.5 mM), suggesting that this effect is mainly related to the hydroxy group substituted at the C-2 position.

2.6. Molecular Docking Analysis

To explore the binding interactions of the most active compounds, molecular docking studies were carried out between alkoxy-substituted xanthones 6c, 6e, 9b, and 10c and the isomaltase enzyme (the α-glucosidase of S. cerevisiae), as well as 1, 6c, 9a, 10c, and 10f and the human α-amylase enzyme. The results of the interactions are illustrated in 2D and 3D (Figure 3 and Figure 4), revealing that the alkoxy-substituted xanthone derivatives recognized some of the key amino acid residues in the catalytic pocket, such as His112, Arg213, Asp215, Glu277, His351, Asp352, and Arg442. A similar set of residues is reported by maltose inhibitors [50,51,52,53,54].
Regarding the binding energy of the compounds with the enzymes, the alkoxy-substituted xanthone derivatives (6c, −9.17; 6e, −9.41; 9b, −7.89 kcal/mol) and the imidazole-substituted xanthone analogues (10c, −9.82; 10f, −9.66 kcal/mol) (Table 2 and Table 3) have better binding energy values (ΔG) than the reference drug 14 (−7.78 for α-glucosidase and −2.92 for α-amylase). The docking studies with α-glucosidase reveal that compounds 6c and 6e adopt an S-shaped conformation. Moreover, the dibenzo-γ-pyrone system of xanthone is involved in hydrophobic interactions of various types: π-π stacked (Phe303), π-π T-shaped (Tyr158), π-anion (Glu411, Asp352), and π-cation and π-sigma (Arg315). The (4-chlorophenyl)-2-oxoethoxy fragment at C-2 of the xanthone core displays different hydrophobic interactions, including π-π T-shaped (Tyr72), π-alkyl (His112, Val216, and Phe178), and π-anion (Asp215 and Glu277), as well as hydrogen bond interactions with Gln279 and Asp352. For compound 9b, the allyl group at C-1 shows a π-alkyl hydrophobic interaction with Phe303, and the 4-bromobutoxy fragment at C-2 exhibits an alkyl hydrophobic interaction with Arg315 and a hydrophilic interaction with the halogen atom (Thr310) while forming a carbon–hydrogen bond with Glu411 and Arg315 residues. According to these results, 6c, 6e, and 9b bind to an allosteric site near the catalytic site of the enzyme since they docked with amino acids of the catalytic pocket, thus sterically blocking it and indicating that they act as mixed inhibitors [55]. Data of 10c are summarized in Tables S1 and Figure S89, Supplementary Materials.
The same trend of interactions was observed when docking natural xanthone 1 and acarbose (14) with α-amylase, exhibiting interactions with some amino acid residues at the active site binding pocket of the enzyme, including Trp58, Trp59, Tyr62, His101, Leu165, Asp197, Glu233, and Asp300 [56,57,58].
Analysis of the docking data for natural xanthone 1 showed hydrogen bond interactions with carboxylate groups of the amino acid of the catalytic triad (Asp197, Glu233, and Asp300), suggesting competitive-type inhibition. Regarding compounds 10c and 10f, the dibenzo-γ-pyrone system of xanthone displays hydrophobic π-π and π-alkyl interactions with residues Trp59 and Tyr62. The fragment 2-(4-chlorophenyl)butoxy imidazole at C-2 of the xanthone core is involved in hydrophobic interactions, such as π-π and π-alkyl (Tyr62, Leu162, His 201, and Ala198), alkyl (Leu162, Ile235, Lys200), and π-anion (Asp300) interactions. In addition, unconventional hydrogen bonding interactions are observed with Asp197 and Asp300 residues of the catalytic triad. This could be due to the fact that compounds 10c (Table S1) and 10f adopted U-shaped and V-shaped conformations, respectively, modifying their rearrangement in space and generating these interactions close to the catalytic pocket, thus suggesting competitive-type inhibition [55]. Data of 6c and 9a are summarized in Table S2 and Figure S90, Supplementary Materials.

2.7. Prediction of Drug-like Properties

The physicochemical properties of the synthesized compounds were analyzed using the OSIRIS DataWarrior program [59] and are summarized in Table S3 (Supplementary Materials). Almost all compounds (except 10f and 12f) have a molecular weight under 500 g/mol. Lipophilicity is expressed as log p and represents the affinity of a molecule or a moiety for a lipophilic environment. Values close to 5 indicate high permeability of lipids, while negative values evidence low permeability [60].
Compounds 1, 6a, 7, 9a, 11b, and 12b–e showed acceptable log p values within the range of 2.78–4.96. Slight to moderate solubility in water was found for all compounds, with log S values ranging from −4.64 to −7.84 [61]. Acarbose (14) has a value of 0.58 (its polar groups form hydrogen bonds with water). The polar surface area (PSA) of a molecule is the sum of the surfaces of oxygen or nitrogen atoms and the hydrogen atoms attached to them. For a drug to cross the blood–brain barrier, the PSA value must be less than 90 A2 [62]. All derivatives herein evaluated met this requirement. Since 1, 6a, 6c, 7, 9a, 10c, 11b, and 12b–e comply with Lipinski’s rule of five (Table S3), they are expected to have oral bioavailability.

2.8. Prediction of Druglikeness, ADME Properties, and Toxicity

The most potent α-glucosidase and α-amylase inhibitors (6c, 6e, 9a, 10c, and 10f) were analyzed with the online software PreADMET 2.0 to predict their druglikeness, ADME, and toxicity (Table 4) [63]. All compounds except 10f complied with Lipinski’s rule of five. Regarding the intestinal barrier, represented by Caco-2 cells, the permeability of 6c, 6e, 10c, and 10f was moderate, while that of 9a was poor. All five compounds have good human intestinal absorption (HIA) and acceptable permeability of the blood–brain barrier (BBB) and skin. Compounds 6e, 10c, and 10e are non-mutagenic, and 6c, 6e, 10c, and 10f are non-carcinogenic on mice and rats. Compound 9a had a carcinogenic effect on rats but not on mice. Furthermore, there was a medium risk of cardiotoxicity (hERG inhibition) for all five compounds when examined in silico. It is worth mentioning that the biological activity data, together with in silico studies (docking, drug prediction, and ADMET), allow for a broader perspective of the effects that the 4′-chlorophenylacetophenone and 4-bromobutoxy moieties produce on the glucosidase and amylase targets, suggesting structural features for the design of new molecules with antidiabetic properties.

3. Materials and Methods

3.1. General Information

Melting points were determined on electrothermal apparatus and are uncorrected. 1H-NMR spectra were recorded on Varian Mercury (300 MHz), Varian VNMR (500 MHz), Bruker 600AVANCE III (600 MHz), and Bruker Ascend (750 MHz) spectrometers. The chemical shifts (δ) are expressed in ppm relative to TMS as an internal standard. Multiplicities were denoted as follows: singlet (s), doublet (d), triplet (t), quartet (q), quintet (qu), multiplet (m), doublet of doublets (dd), double doublet of doublets (ddd), doublet of triplets (dt), double of quartets (dq), triplet of doublets (td), triplet of doublets multiplet (tdm), broad singlet (brs), broad doublet (brd), broad triplet (brt), and broad triplet of doublets (brtd). High-resolution mass spectra (HRMS, in electron ionization mode) were acquired on a Jeol JSM-GCMatell instrument. Electrospray mass spectra (ESI-MS) were captured on a micrOTOf-Q II spectrometer. Anhydrous solvents were obtained by a distillation process. Thin-layer chromatography was carried out on precoated silica gel plates (Merck 60F254). Silica gel (230–400 mesh) was used for flash chromatography. All standard reagents employed in synthesis and experiments were purchased from Sigma-Aldrich (acarbose (14), α-glucosidase from Saccharomyces cerevisiae, and α-amylase from porcine pancreas).

3.2. Chemistry

2-Methoxybenzen-1,4-diol (2). A mixture of vanillin (1.0 mol equiv.) and MCPBA (77%, 1.4 mol equiv.) in CH2Cl2 (100 mL) was stirred at room temperature (rt) for 5 h. The reaction mixture was filtered and the solvent was removed under vacuum. The dried crude product was dissolved in MeOH (80 mL), and 6 N HCl (4 mL) was added. The mixture was then stirred at rt for 1 h, followed by removal of the solvent under vacuum. The residue was extracted with EtOAc (3 × 50 mL), the organic layers were dried (Na2SO4), and the solvent was evaporated under vacuum. The residue was purified by column chromatography over silica gel (n-hexane/EtOAc, 7:3), providing 2 as a brown solid (86%). Rf 0.20 (n-hexane/EtOAc, 7:3); mp 174–175 °C (Lit. 173–175 °C [28]). 1H-NMR (300 MHz, DMSO-d6) δ: 3.71 (s, 3H, OCH3), 6.17 (dd, J = 8.4, 2.7 Hz, 1H, H-5), 6.34 (d, J = 2.7 Hz, 1H, H-3), 6.59 (d, J = 8.7 Hz, 1H, H-6), 7.44 (s, 1H, OH), 8.37 (s, 1H, OH). 13C-NMR (75 MHz, DMSO-d6) δ: 55.3 (OCH3), 100.0 (C-3), 106.1 (C-5), 115.0 (C-6), 138.6 (C1), 147.6 (C2), 150.1 (C4).
(2,5-dihydroxy-4-methoxyphenyl)(2-iodophenyl)methanone (3a). BF3 OEt2 (2.0 mol equiv.) was added to a solution of phenol 2 (2.0 mol equiv.) and 2-iodobenzoyl chloride (1.5 mol equiv.) under nitrogen atmosphere at 0 °C. The mixture was stirred at 80 °C for 3 h. The residue was poured into ice water (10 mL), adjusted to neutral pH with an aqueous saturated solution of NaHCO3, and extracted with EtOAc (3 × 30 mL). The organic layer was dried (Na2SO4) and concentrated under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 9:1), providing 3a as a yellow oil (81%). Rf 0.55 (n-hexane/EtOAc, 6:4). 1H-NMR (500 MHz, CDCl3) δ: 3.68 (s, 3H, OCH3), 6.42 (brs, 1H, OH-4), 6.52 (s, 1H, H-6), 6.60 (s, 1H, H-3), 7.18 (td, J = 8.0, 1.5 Hz, 1H, H-4′), 7.29 (dd, J = 8.0, 1.5 Hz, 1H, H-6′), 7.47 (td, J = 8.0, 1.5 Hz, 1H, H-5′), 7.93 (d, J = 8.0 Hz, 1H, H-3′), 12.26 (s, 1H, OH-C-2). 13C-NMR (125 MHz, CDCl3) δ: 56.2 (OCH3), 92.0 (C-2′), 99.7 (C-3), 110.9 (C-1), 113.1 (C-6), 127.90 (C-5′), 127.95 (C-6′), 131.0 (C-4′), 139.9 (C-3′ and C-5), 143.6 (C-1′), 154.7 (C-4), 161.8 (C-2), 200.0 (C=O). HRMS (EI+) calculated for C14H11IO4: 369.9702. Found: 369.9705.
Methyl 2-(4-hydroxy-5-(2-iodobenzoyl)-2-methoxyphenoxy)acetate (3b). A solution of benzophenone 3a (1.0 mol equiv.) and K2CO3 (1.5 mol equiv.) in dry acetone (7 mL) was stirred to 25 °C for 15 min, and methyl bromoacetate (4a) (1.5 mol equiv.) was added dropwise. The reaction mixture was refluxed at 60 °C for 3 h. The crude reaction mixture was filtered, and the solvent removed under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 8:2), producing 3a as a yellow oil (75%). Rf 0.45 (n-hexane/EtOAc, 6:4). 1H-NMR (500 MHz, CDCl3) δ: 3.70 (s, 3H, CO2OCH3), 3.94 (s, 3H, OCH3-2′), 4.45 (s, 2H, OCH2), 6.55 (s, 1H, H-3′), 6.62 (s, 1H, H-6′), 7.20 (td, J = 7.5, 1.5 Hz, 1H, H-4″), 7.26 (dd, J = 7.5, 1.5 Hz, 1H, H-6″), 7.47 (td, J = 7.5, 1.0 Hz, 1H, H-5″), 7.92 (d, J = 8.0 Hz, 1H, H-3″), 12.33 (s, 1H, OH). 13C-NMR (125 MHz, CDCl3) δ: 52.1 (CO2CH3), 56.3 (OCH3-2′), 67.5 (OCH2), 92.0 (C-2″), 101.0 (C-3′), 111.0 (C-5′), 119.1 (C-6′), 127.8 (C-5″), 128.0 (C-6″), 131.1 (C-4″), 139.5 (C-3″), 139.9 (C-1′), 142.0 (C-1″), 158.4 (C-2′), 162.4 (C-4′) 169.0 (CO2CH3), 200.2 (CO). HRMS (EI+) calculated for C17H15IO6: 441.9913. Found: 441.9917.
Methyl (Z)-3-(dimethylamino)-2-((3-methoxy-9-oxo-9H-xanthen-2-yl)oxy)acrylate (5). Methyl 2-((3-methoxy-9-oxo-9H-xanthen-2-yl)oxy)acetate (6a). A mixture of 3b (1.0 mol equiv.) and DMADMF (4.0 mol equiv.) was placed at rt in a threaded ACE glass pressure tube with a sealed Teflon screw cap and heated at 120 °C for 48 h. The reaction mixture was cooled and diluted with CH2Cl2 (30 mL), and the solvent was then removed under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 8:2), affording 6a as a pale-yellow solid (20%) and 5 as a yellow solid (40%). 6a: Rf 0.60 (n-hexane/EtOAc, 1:2); mp 139–140 °C. 5: Rf 0.42 (n-hexane/EtOAc, 1:2); mp 164–165 °C. Data for 5: 1H-NMR (500 MHz, CDCl3) δ: 2.98 (s, 6H, N(CH3)2), 3.61 (s, 3H, CO2CH3), 4.03 (s, 3H, OCH3-3′), 6.95 (s, 1H, H-4′), 7.22 (s, 1H, H-3), 7.35 (ddd, J = 8.0, 7.0, 1.0 Hz, 1H, H-7′), 7.44 (d, J = 8.5 Hz, 1H, H-5′), 7.67 (ddd, J = 8.5, 7.0, 1.5 Hz, 1H, H-6′), 7.71 (s, 1H, H-1′), 8.31 (dd, J = 8.0, 1.5 Hz, 1H, H-8′). 13C-NMR (125 MHz, CDCl3) δ: 42.2 (N(CH3)2), 51.0 (CO2CH3), 56.5 (OCH3-3′), 100.1 (C-4′), 109.0 (C-1′), 115.0 (C-9a’), 117.7 (C-5′), 121.5 (C-2, C-8a’), 123.5 (C-7′), 126.5 (C-8′), 133.9 (C-6′), 139.9 (C-3), 146.4 (C-2′), 152.8 (C-4a’), 155.2 (C-3′), 156.0 (C-4b’), 165.6 (CO2CH3), 176.0 (CO-9′). HMRS (EI+) calculated for C20H19NO6: 369.1212. Found: 369.1199.
Data for 6a: 1H-NMR (500 MHz, CDCl3) δ: 3.83 (s, 3H, CO2CH3), 4.03 (s, 3H, OCH3-3′), 4.82 (s, 2H, OCH2, H-2), 6.95 (s, 1H, H-4′), 7.37 (td, J = 7.5, 1.0 Hz, 1H, H-7′), 7.45 (d, J = 8.5 Hz, 1H, H-5′), 7.60 (s, 1H, H-1′), 7.68 (ddd, J = 8.5, 7.5, 1.7 Hz, 1H, H-6′), 8.31 (dd, J = 7.5, 1.7 Hz, 1H, H-8′). 13C-NMR (125 MHz, CDCl3) δ: 52.3 (CO2CH3), 56.5 (OCH3-3′), 65.9 (OCH2), 100.2 (C-4′), 107.4 (C-1′), 114.7 (C-9a’), 117.7 (C-5′), 121.5 (C-8a’), 123.8 (C-7′), 126.5 (C-8′), 134.1 (C-6′), 144.9 (C-2′), 153.0 (C-4a’), 155.8 (C-3′), 156.1 (C-4b’), 168.6 (CO2CH3), 175.9 (CO-9′). HRMS (EI+) calculated for C17H14O6: 314.0790. Found: 314.0790.
2-Hydroxy-3-methoxy-9H-xanthen-9-one (1). A mixture of benzophenone 3a (1.0 mol equiv.), and KOH (3.0 mol equiv.) in distilled water (7 mL) was placed at rt in a threaded ACE glass pressure tube with a sealed Teflon screw cap and was heated at 100 °C for 6 h. An aqueous solution of HCl (10%) was added until neutral and the residue was extracted with EtOAc (3 × 50 mL). The organic layer was dried (Na2SO4) and concentrated under vacuum. The crude product was purified through recrystallization with EtOAc, furnishing 1 as colorless crystals (93%). Rf 0.5 (n-hexane/EtOAc, 1:1); mp 170–171 °C (lit. 173–175 °C [28]). 1H-NMR (300 MHz, DMSO-d6) δ: 3.92 (s, 3H, OCH3), 6.86 (s, 1H, H-4), 7.28 (td, J = 8.1, 0.9 Hz, 1H, H-7), 7.39 (d, J = 8.4 Hz, 1H, H-5), 7.52 (s, 1H, H-1), 7.61 (td, J = 8.4, 1.5 Hz, 1H, H-6), 8.18 (dd, J = 8.1, 1.5 Hz, 1H, H-8), 9.30 (s, 1H, OH). 13C-NMR (75 MHz, CDCl3) δ: 55.8 (OCH3), 99.1 (C-4), 108.4 (C-1), 114.4 (C-9a), 117.2 (C-5), 120.7 (C-8a), 123.0 (C-7), 125.5 (C-8), 133.4 (C-6), 143.8 (C-2), 150.8 (C-4a), 154.3 (C-3), 155.4 (C-4b), 175.1 (CO-9). HRMS (ESI+) calculated for C14H10O4 + Na: 265.0477 ([M+Na]+). Found: 265.0472 [M+Na]+.
  • General method for preparing 2-alkoxy-substituted xanthones 6a–d
A solution of 2-hydroxyxanthone 1 (1.0 mol equiv.) and K2CO3 (1.5 mol equiv.) in dry acetone (7 mL) was stirred at 25 °C for 15 min, and α-halocarbonyl (4a–c) or allyl bromide (4d) (1.5 mol equiv.) was added dropwise. The reaction mixture was refluxed at 60 °C for 3 h. After the reaction was completed (as monitored by TLC), the reaction mixture was filtered, and the solvent was removed under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 8:2), generating the corresponding product.
Methyl 2-((3-methoxy-9-oxo-9H-xanthen-2-yl)oxy)acetate (6a). A pale-yellow solid (87%), Rf 0.60 (n-hexane/EtOAc, 1:2); mp 139–140 °C.
3-Methoxy-2-(2-oxopropoxy)-9H-xanthen-9-one (6b). A white solid (92%), Rf 0.50 (n-hexane/EtOAc, 7:3); mp 144–145 °C. 1H-NMR (500 MHz, CDCl3) δ: 2.33 (s, 3H, H-3′), 4.03 (s, 3H, CH3CO), 4.74 (s, 2H, CH2), 6.95 (s, 1H, H-4), 7.37 (td, J = 7.2, 0.8 Hz, 1H, H-7), 7.45 (d, J = 8.4 Hz, 1H, H-5), 7.56 (brs, 1H, H-1), 7.69 (td, J = 8.4, 1.6 Hz, 1H, H-6), 8.32 (dd, J = 8.0, 1.6 Hz, 1H, H-8′). 13C-NMR (125 MHz, CDCl3) δ: 26.5 (CH3CO), 56.5 (OCH3), 73.7 (CH2), 100.2 (C-4), 107.5 (C-1), 114.7 (C-9a), 117.6 (C-5), 121.4 (C-8a), 123.8 (C-7), 126.5 (C-8), 134.1 (C-6), 144.9 (C-2), 153.0 (C-4a), 155.8 (C-3), 156.6 (C-4b), 175.8 (CO-9), 203.7 (CH3CO). HRMS (ESI+) calculated for C17H14O5 + H: 299.0919 ([M+H]+). Found: 299.0893 [M+H]+.
2-(2-(4-Chlorophenyl)-2-oxoethoxy)-3-methoxy-9H-xanthen-9-one (6c). A white solid (98%), Rf 0.51 (n-hexane/EtOAc, 7:3); mp 175–176 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 3.99 (s, 3H, OCH3), 5.74 (s, 2H, CH2), 7.26 (s, 1H, H-4), 7.44 (td, J = 7.5, 0.7 Hz, 1H, H-7), 7.48 (s, 1H, H-1), 7.62 (d, J = 8.2 Hz, 1H, H-5), 7.66–7.68 (m, 2H, H-3″), 7.82 (td, J = 8.2, 1.5 1H, H-6), 8.07–8.09 (m, 2H, H-2″), 8.14 (dd, J = 8.2, 1.5 Hz, 1H, H-8). RMN-13C (187.5 MHz, CDCl3) δ: 56.5 (OCH3), 76.8 (CH2), 100.6 (C-4), 106.6 (C-1), 113.7 (C-9a), 117.9 (C-5), 120.7 (C-8a), 124.1 (C-7), 125.7 (C-8), 129.0 (C-3″), 129.9 (C-2″), 132.9 (C-4″), 134.7 (C-6), 138.8 (C-1″), 145.0 (C-2), 152.1 (C-4a), 155.4 (C-3), 155.6 (C-4b), 174.5 (CO-9), 193.3 (CO-2′). HRMS (EI+) calculated for C22H15ClO5: 394.0608. Found: 394.0610.
2-(Allyloxy)-3-methoxy-9H-xanthen-9-one (6d). A white solid (87%), Rf 0.45 (n-hexane/EtOAc, 7:3); mp 150–151 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 3.94 (s, 3H, OCH3), 4.65 (d, J = 5.2 Hz, 2H, H-1′), 5.29 (dd, J = 10.5, 1.5 Hz, 1H, H-3′), 5.44 (dd, J = 17.2, 1.5 Hz, 1H, H-3′), 6.08 (m, 1H, H-2′), 7.16 (s, 1H, H-4), 7.460 (brt, J = 7.5 Hz, 1H, H-7), 7.463 (s, 1H, H-1), 7.56 (d, J = 8.2 Hz, 1H, H-5), 7.79 (td, J = 8.2, 0.7 Hz, 1H, H-6), 8.14 (d, J = 7.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 56.4 (OCH3), 69.1 (C-1′), 100.3 (C-1), 106.1 (C-4), 113.8 (C-9a), 117.80 (C-5), 117.87 (C-3′), 120.7 (C-8a), 124.0 (C-7), 125.7 (C-8), 133.3 (C-2′), 134.5 (C-6), 145.3 (C-2), 151.8 (C-4a), 155.4 (C-4b), 155.6 (C-3), 174.5 (CO-9). HRMS (ESI+) calculated for C17H14O4 + H: 283.0970 ([M+H]+). Found: 283.0944 [M+H]+.
1-Allyl-2-hydroxy-3-methoxy-9H-xanthen-9-one (7). A solution of 6d (1.0 mol equiv.) in decalin (1.0 mL) was placed at rt in a threaded ACE glass pressure tube with a sealed Teflon screw cap and heated at 200 °C for 12 h. The reaction was cooled and diluted with CH2Cl2 (30 mL), and the solvent was removed under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 8:2), resulting in 7 as a yellow solid (95%). Rf 0.60 (n-hexane/EtOAc, 6:4); mp 167–169 °C. 1H-NMR (750 MHz, CDCl3) δ: 4.03 (s, 3H, OCH3), 4.26 (dt, J = 6.0, 1.6 Hz, 2H, H-1′), 5.00 (dq, J = 10.0, 1.6 Hz, 1H, H-3′), 5.08 (dq, J = 17.2, 1.6 Hz, 1H, H-3′), 5.67 (s, 1H, OH), 6.18 (ddt, J = 17.2, 10.0, 6.0 Hz, 1H, H-2′), 6.85 (s, 1H, H-4), 7.32 (td, J = 7.2, 0.8 Hz, 1H, H-7), 7.38 (dd, J = 8.4, 0.8 Hz, 1H, H-5), 7.64 (td, J = 7.2, 1.6 Hz, 1H, H-6), 8.29 (dd, J = 8.0, 2.0 Hz, 1H, H-8). 13C-NMR (187.5 MHz, CDCl3) δ: 30.2 (C-1′), 56.3 (OCH3), 97.6 (C-4), 113.9 (C-9a), 114.6 (C-3′), 117.0 (C-5), 122.5 (C-8a), 123.5 (C-7), 125.7 (C-1), 126.7 (C-8), 133.6 (C-6), 136.8 (C-2′), 140.6 (C-2), 151.5 (C-3), 153.0 (C-4a), 155.1 (C-4b), 177.6 (CO-9). HRMS (ESI+) calculated for C17H14O4 + H: 283.0970 ([M+H]+). Found: 283.0958 [M+H]+.
1-Allyl-2-(2-(4-chlorophenyl)-2-oxoethoxy)-3-methoxy-9H-xanthen-9-one (6e). Following the method for preparing 6c with 7 as a starting material, 6e was obtained as a white solid (97%). Rf 0.67 (n-hexane/EtOAc, 7:3); mp 197–198 °C. 1H-NMR (600 MHz, CDCl3) δ: 3.93 (s, 3H, OCH3), 4.30 (dt, J = 5.7, 1.2 Hz, 2H, H-1′), 4.94 (dq, J = 16.8, 1.8 Hz, 1H, H-3′), 4.96 (dq, J = 9.0, 1.8 Hz, 1H, H-3′), 5.15 (s, 2H, H-1″), 6.16 (ddt, J = 16.8, 9.0, 5.7 Hz, 1H, H-2′), 6.87 (s, 1H, H-4), 7.34 (brt, J = 7.8 Hz, 1H, H-7), 7.40 (brd, J = 7.8, 0.6 Hz, 1H, H-5), 7.46–7.48 (m, 2H, H-3‴), 7.66 (td, J = 8.4, 1.2 1H, H-6), 7.96–7.98 (m, 2H, H-2″); 8.27 (dd, J = 7.8, 1.8 Hz, 1H, H-8). RMN-13C (150 MHz, CDCl3) δ: 31.0 (C-1′), 56.0 (OCH3), 75.7 (C-1″), 99.0 (C-4), 113.6 (C-9a), 114.6 (C-3′), 117.0 (C-5), 122.4 (C-8a), 123.7 (C-7), 126.7 (C-8), 129.0 (C-3″), 129.5 (C-2″), 133.1 (C-1‴), 133.94 (C-6), 135.6 (C-1), 137.7 (C-2′), 140.0 (C-4‴), 142.7 (C-2), 155.0 (C-4b), 155.8 (C-4a), 157.3 (C3), 177.2 (CO-9), 193.3 (CO-2″). HRMS (EI+) calculated for C25H19ClO5: 434.0921. Found: 434.0926.
5-Methoxy-3,3-dimethylpyrano[3,2-a]xanthen-12(3H)-one (8). 1,1-Diethoxy-3-methylbut-1-ene (1.2 mol equiv.) was added dropwise to a solution of 1 (1.0 mol equiv.) and 3-methylpicoline (0.6 mol equiv.) in xylene (5 mL). The mixture was refluxed at 120 °C for 30 h and then filtered, and the solvent was removed under vacuum. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 9:1), providing 8 as a yellow solid (56%). Rf 0.50 (n-hexane/EtOAc, 7:3); mp 182–184 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 1.40 (s, 6H, (CH3)2), 3.94 (s, 3H, OCH3), 5.93 (d, J = 10.1 Hz, 1H, H-2), 7.12 (s, 1H, H-6), 7.42 (brt, J = 8.2 Hz, 1H, H-10), 7.56 (d, J = 8.2 Hz, 1H, H-8), 7.79 (td, J = 8.2, 1.5 Hz, 1H, H-9), 7.96 (d, J = 10.1 Hz, 1H, H-1), 8.13 (dd, J = 8.2, 1.5 Hz, 1H, H-11). 13C-NMR (187.5 MHz, DMSO-d6) δ: 26.8 ((CH3)2), 56.2 (OCH3), 75.2 (C-3), 100.2 (C-6), 109.0 (C-12a), 117.3 (C-8), 119.2 (C-12b), 120.2 (C-1), 121.7 (C-11a), 123.9 (C-10), 125.8 (C-11), 132.4 (C-2), 134.5 (C-9), 138.7 (C-4a), 152.5 (C-6a), 154.2 (C-5), 154.6 (C-7a), 176.7 (CO). HRMS (EI+) calculated for C19H16O4: 308.1049. Found: 308.1045.
2-(4-Bromobutoxy)-3-methoxy-9H-xanthen-9-one (9a). A mixture of 1 (1.0 mol equiv.) and K2CO3 (2.5 mol equiv.) in dry acetone (10 mL) was stirred at 25 °C for 15 min, and 1,4-dibromobutane (7.5 mol equiv.) was then added dropwise. The reaction mixture was refluxed at 60 °C for 6 h. The residue was purified by flash chromatography over silica gel (n-hexane/EtOAc, 9:1) to provide 9a as a white solid (95%). Rf 0.43 (n-hexane/EtOAc, 7:3); mp 116–117 °C. 1H-NMR (750 MHz, CDCl3) δ: 2.03–2.08 (m, 2H, H-2′), 2.09–2.14 (m, 2H, H-3′), 3.52 (t, J = 6.0 Hz, H-4′), 4.00 (s, 3H, OCH3), 4.17 (t, J = 6.0 Hz, H-1′), 6.91 (s, 1H, H-4), 7.37 (td, J = 7.5, 0.75 Hz, 1H, H-7), 7.46 (dd, J = 9.0, 0.75 Hz, 1H, H-5), 7.65 (s, 1H, H-1), 7.68 (td, J = 8.25, 1.5 Hz, 1H, H-6), 8.33 (dd, J = 7.5, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, CDCl3) δ: 27.6 (C-2′), 29.4 (C-3′), 33.3 (C-4′), 56.4 (OCH3), 68.2 (C-1′), 99.7 (C-4), 106.6 (C-1), 114.8 (C-9a), 117.6 (C-5), 121.4 (C-8a), 123.7 (C-7), 126.5 (C-8), 133.9 (C-6), 145.9 (C-2), 152.4 (C-4a), 155.7 (C-3), 156.0 (C-4b), 176.0 (CO-9). HRMS (EI+) calculated for C18H17BrO4: 376.0310. Found: 376.0307.
1-Allyl-2-(4-bromobutoxy)-3-methoxy-9H-xanthen-9-one (9b). Following the method for preparing 9a with 7 as a starting material, 9b was obtained as a yellow solid (98%). Rf 0.56 (n-hexane/EtOAc, 7:3); mp 69–70 °C. 1H-NMR (600 MHz, CDCl3) δ: 1.97 (q, J = 6.6 Hz, 2H, H-2″), 2.15 (q, J = 6.6 Hz, 2H, H-3″), 3.46 (t, J = 6.6 Hz, 2H, H-4″), 3.95 (t, J = 6.0 Hz, 2H, H-1″), 3.98 (s, 3H, OCH3), 4.22 (dt, J = 6.0, 1.8 Hz, 2H, H-1′), 4.96 (dq, J = 12.0, 1.8 Hz, 1H, H-3′), 4.98 (dq, J = 17.0, 1.8 Hz, 1H, H-3′), 6.16 (ddt, J = 17.0, 12.0, 6.0 Hz, 1H, H-2′), 6.85 (s, 1H, H-4), 7.35 (td, J = 8.4, 0.6 Hz, 1H, H-7), 7.38 (dd, J = 8.4, 0.6 Hz, 1H, H-5), 7.64 (td, J = 8.4, 1.8 Hz, 2H, H-6), 8.27 (dd, J = 8.4, 1.8 Hz, 1H, H-8). 13C-NMR (150 MHz, CDCl3) δ: 28.8 (C-2″), 29.4 (C-3″), 30.9 (C-1′), 33.632 (C-4″), 56.0 (OCH3), 72.3 (C-1″), 98.8 (C-4), 113.5 (C-9a), 114.4 (C-3′), 116.9 (C-5), 122.5 (C-8a), 123.6 (C-7), 126.7 (C-8), 133.7 (C-6), 135.4 (C-1), 137.7 (C-2′), 143.3 (C-2), 155.0 (C-4a), 155.5 (C-4b), 158.0 (C-3), 177.1 (CO-9). HRMS (EI+) calculated for C21H21BrO4: 416.0623 [M+]. Found: 416.0589 [M+].
  • General method for preparing imidazole-substituted xanthones 10a–f
Alkoxy-substituted xanthones 9a–b (1.0 mol equiv.) were each added dropwise to a mixture of the respective imidazole 13a–c (2.0 mol equiv.) and K2CO3 (10.0 mol equiv.) in dry acetone (10 mL) at rt, followed by stirring for 15 min. After subsequent refluxing at 60 °C for 48 h, the reaction mixture was filtered and the solvent was removed under vacuum. The residue was diluted with 50 mL of EtOAc, washed three times with brine, and dried over anhydrous Na2SO4. The solvent was removal under vacuum, and the residual mixture was purified by flash chromatography over silica gel (CH2Cl2/MeOH, 98:02), generating the corresponding product.
2-(4-(1H-imidazol-1-yl)butoxy)-3-methoxy-9H-xanthen-9-one (10a). A white solid (75%), Rf 0.73 (n-hexane/EtOAc, 1:2); mp 137–138 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 1.69 (qu, J = 6.7 Hz, 2H, CH2, H-2′), 1.88 (qu, J = 6.7 Hz, CH2, H-3′), 3.93 (s, 3H, OCH3), 4.03–4.08 (m, 4H, H-1′, H-4′), 6.89 (s, 1H, H-4″), 7.18 (s, 1H, H-4), 7.21 (s, 1H, H-5″), 7.43 (td, J = 7.5, 0.7 Hz, 1H, H-7), 7.46 (s, 1H, H-1), 7.59 (brd, J = 8.2, 0.6 Hz, 1H, H-5), 7.67 (brs, 1H, H-2″), 7.81 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.15 (dd, J = 7.5, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 25.5 (C-2′), 27.4 (C-3′), 45.6 (C-4′), 56.5 (OCH3), 68.1 (C-1′), 100.4 (C-1), 105.6 (C-4), 113.8 (C-9a), 117.8 (C-5), 119.3 (C-5″), 120.7 (C-8a), 124.1 (C-7), 125.7 (C-8), 128.3 (C-4″), 134.6 (C-6), 137.3 (C-2″), 146.8 (C-2), 151.8 (C-4a), 155.4 (C-4b), 155.6 (C-3), 174.6 (CO-9). HRMS (EI+) calculated for C21H20N2O4: 364.1423. Found: 364.1433.
3-Methoxy-2-(4-(2-phenyl-1H-imidazol-1-yl)butoxy)-9H-xanthen-9-one (10b). A white solid (40%), Rf 0.59 (CH2Cl2/MeOH, 9:1); mp 132–134 °C. 1H-NMR (500 MHz, DMSO-d6) δ: 1.67 (qu, J = 6.5 Hz, 2H, H-2′), 1.84 (qu, J = 7.0 Hz, 2H, H-3′), 3.90 (s, 3H, OCH3), 3.96 (t, J = 7.0 Hz, 2H, H-1′), 4.15 (t, J = 7.5 Hz, 2H, H-4′), 7.01 (brs, 1H, H-4″), 7.17 (s, 1H, H-4), 7.36 (brd, J = 0.5 Hz, 1H, H-5″), 7.39–7.46 (m, 4H, H-1, H-7, H-3‴), 7.57–7.62 (m, 3H, H-5, H-2‴), 7.65–7.72 (m, 1H, H-4‴), 7.81 (td, J = 8.5, 2.0 Hz, 2H, H-6), 8.16 (dd, J = 8.0, 1.5 Hz, 1H, H-8). 13C-NMR (125 MHz, DMSO-d6) δ: 25.4 (C-2′), 27.1 (C-3′), 45.8 (C-4′), 56.4 (OCH3), 67.8 (C-1′), 100.3 (C-4), 105.6 (C-1), 113.8 (C-9a), 117.8 (C-5), 120.7 (C-5″), 121.6 (C-8a), 124.0 (C-7), 125.7 (C-8), 127.8 (C-4″), 128.31 (C-2‴), 128.35 (C-3‴), 128.4 (C-1‴), 131.0 (C-4‴), 134.5 (C-6), 145.7 (C-2), 146.3 (C-2″), 151.8 (C-4a), 155.4 (C-4b), 155.6 (C-3), 174.5 (CO-9). HRMS (EI+) calculated for C27H24N2O4: 440.1736. Found: 440.1753.
2-(4-(2-(4-Chlorophenyl)-1H-imidazol-1-yl)butoxy)-3-methoxy-9H-xanthen-9-one (10c). A white solid (50%), Rf 0.62 (CH2Cl2/MeOH, 9:1); mp 155–157 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 1.69 (qu, J = 6.7 Hz, 2H, H-2′), 1.86 (qu, J = 7.5 Hz, 2H, H-3′), 3.91 (s, 3 H, OCH3), 4.01 (t, J = 6.7 Hz, 2H, H-1′), 4.17 (t, J = 7.5 Hz, 2H, H-4′), 7.02 (d, J = 0.7 Hz, 1H, H-4″), 7.21 (s, 1H, H-4), 7.39 (dd, J = 0.7 Hz, 1H, H-5″), 7.42–7.50 (m, 4H, H-1, H-7, H-3‴), 7.60–7.65 (m, 3H, H-5, H-2‴), 7.83 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.18 (dd, J = 8.2, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 25.4 (C-2′), 27.1 (C-3′), 45.9 (C-4′), 56.4 (OCH3), 67.8 (C-1′), 100.3 (C-4), 105.6 (C-1), 113.8 (C-9a), 117.8 (C-5), 120.8 (C-8a), 122.1 (C-5″), 124.1 (C-7), 125.7 (C-8), 128.0 (C-4″), 128.5 (C-3‴), 129.8 (C-1‴), 129.9 (C-2‴), 133.0 (C-4‴), 134.6 (C-6), 145.1 (C-2″), 145.7 (C-2), 151.8 (C-4a), 155.4 (C-4b), 155.6 (C-3), 174.6 (CO-9). HRMS (EI+) calculated for C27H23N2O4Cl: 474.1346. Found: 474.1375.
2-(4-(1H-Imidazol-1-yl)butoxy)-1-allyl-3-methoxy-9H-xanthen-9-one (10d). A white solid (78%), Rf 0.56 (CH2Cl2/MeOH, 9:1); mp 155–157 °C. 1H-NMR (600 MHz, DMSO-d6) δ: 1.66 (qu, J = 7.2 Hz, 2H, H-2″), 1.87–1.93 (m, 2H, H-3″), 3.85 (t, J = 6.6 Hz, 2H, H-1″), 3.95 (s, 3H, OCH3), 4.05 (t, J = 7.2 Hz, 2H, H-4″), 4.09 (brd, J = 6.0 Hz, 2H, H-1′), 4.86–4.91 (m, 2H, H-3′), 5.99 (ddt, J = 16.8, 10.8, 6.0 Hz, 1H, H-2′), 6.92 (brs, 1H, H-4‴), 7.14 (s, 1H, H-4), 7.21 (brs, 1H, H-5‴), 7.41 (td, J = 7.8, 0.6 Hz, 1H, H-7), 7.54 (brd, J = 8.4 Hz, 1H, H-5), 7.67 (brs, 1H, H-2‴), 7.78 (td, J = 8.4, 1.2 Hz, 1H, H-6), 8.11 (dd, J = 7.8, 1.2 Hz, 1H, H-8). 13C-NMR (150 MHz, DMSO-d6) δ: 26.7 (C-2″), 27.3 (C-3″), 30.3 (C-1′), 45.7 (C-4″), 56.4 (OCH3), 72.2 (C-1″), 99.6 (C-4), 112.3 (C-9a), 114.5 (C-3′), 117.2 (C-5), 119.3 (C-5‴), 121.7 (C-8a), 124.0 (C-7), 126.7 (C-8), 128.4 (C-4‴), 134.0 (C-1), 134.5 (C-6), 137.5 (C-2′, C-2‴), 142.9 (C-2), 154.4 (C-4b), 155.0 (C-4a), 158.0 (C-3), 176.0 (CO-9). HRMS (EI+) calculated for C24H24N2O4: 404.1736. Found: 404.1744.
1-Allyl-3-methoxy-2-(4-(2-phenyl-1H-imidazol-1-yl)butoxy)-9H-xanthen-9-one (10e). A yellow oil (12%), Rf 0.63 (CH2Cl2/MeOH, 9:1). 1H-NMR (500 MHz, CDCl3) δ: 1.71–1.80 (m, 2H, H-2″), 1.97–2.08 (m, 2H, H-3″), 3.87 (t, J = 6.0 Hz, 2H, H-1″), 3.92 (s, 3H, OCH3), 4.10–4.22 (m, 4H, H-1′, H-4″), 4.90 (dq, J = 10.0, 1.5 Hz, 1H, H-3′), 4.95 (dq, J = 17.0, 1.5 Hz, 1H, H-3′), 6.12 (ddt, J = 17.0, 10.0, 6.0 Hz, 1H, H-2′), 6.84 (s, 1H, H-4), 7.09 (s, 1H, H-4‴), 7.17 (s, 1H, H-5‴), 7.33 (td, J = 8.0, 1.0 Hz, 1H, H-7), 7.36–7.47 (m, 4H, H-5, H-3IV, H-4IV), 7.60 (dd, J = 7.0, 1.0 Hz, 2H, H-2IV), 7.65 (td, J = 8.5, 1.0 Hz, 1H, H-6), 8.27 (dd, J = 8.0, 2.0 Hz, 1H, H-8). 13C-NMR (125 MHz, CDCl3) δ: 27.1 (C-2″), 27.8 (C-3″), 30.8 (C-1′), 46.6 (C-4″), 55.9 (OCH3), 72.5 (C-1″), 98.8 (C-4), 113.5 (C-9a), 114.4 (C-3′), 117.0 (C-5), 120.3 (C-5‴), 122.4 (C-8a), 123.6 (C-7), 125.2 (C-8), 126.7 (C-4‴), 128.6 (C-2IV), 128.7 (C-4IV), 128.9 (C-3IV), 130.9 (C-1IV), 133.8 (C-1), 135.3 (C-6), 137.7 (C-2′), 143.2 (C-2), 147.7 (C-2‴), 155.0 (C-4b), 155.5 (C-4a), 157.8 (C-3), 177.1 (CO-9). HRMS (EI+) calculated for C30H28O4N2: 480.2049. Found: 480.2050.
1-Allyl-2-(4-(2-(4-chlorophenyl)-1H-imidazol-1-yl)butoxy)-3-methoxy-9H-xanthen-9-one (10f). A brown solid (37%), Rf 0.70 (CH2Cl2/MeOH, 9:1); mp 90–92 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 1.59 (qu, J = 6.7 Hz, 2H, H-2″), 1.84 (qu, J = 6.7 Hz, 2H, H-3″), 3.76 (t, J = 6.7 Hz, 2H, H-1″), 3.90 (s, 3H, OCH3), 4.03 (brd, J = 6.0 Hz, 2H, H-1′), 4.16 (t, J = 6.7 Hz, 2H, H-4″), 4.82 (dq, J = 18.0, 1.5 Hz, 1H, H-3′), 4.85 (dq, J = 10.5, 1.5 Hz, 1H, H-3′), 5.93 (ddt, J = 18.0, 10.5, 6.0 Hz, 1H, H-2′), 7.03 (d, J = 0.7 Hz, 1H, H-4‴), 7.12 (s, 1H, H-4), 7.37 (d, J = 0.7 Hz, 1H, H-5‴), 7.41 (td, J = 7.5, 0.7 Hz, 1H, H-7), 7.48–7.52 (m, 2H, H-3IV), 7.54 (d, J = 8.2 Hz, 1H, H-5), 7.62–7.66 (m, 2H, H-2IV), 7.78 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.11 (dd, J = 8.2, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 26.5 (C-2″), 27.0 (C-3″), 30.3 (C-1′), 46.1 (C-4″), 56.3 (OCH3), 72.0 (C-1″), 99.6 (C-4), 112.3 (C-9a), 114.4 (C-3′), 117.2 (C-5), 121.7 (C-8a), 122.0 (C-5‴), 124.0 (C-7), 126.0 (C-8), 128.0 (C-4‴), 128.5 (C-3IV), 129.9 (C-1IV), 130.0 (C-2IV), 133.1 (C-4IV), 133.9 (C-1), 134.5 (C-6), 137.6 (C-2′), 142.8 (C-2), 145.3 (C-2‴), 154.4 (C-4b), 154.9 (C-4a), 157.9 (C-3), 176.0 (CO-9). HRMS (EI+) calculated for C30H27N2O4Cl: 514.1659. Found: 514.1658.
  • General procedure for preparing 2-alkoxy-substituted xanthones 11a–b
Epichlorohydrin (2.5 mol equiv.) was added dropwise to a solution of xanthone 1 or 7 (1.0 mol equiv.) and KOH (2.5 mol equiv.) in EtOH (7 mL), followed by stirring for 15 min. After the subsequent refluxing of the reaction mixture for 12 h, the residual mixture was filtered, and the solvent was removed under vacuum. The crude was purified by flash chromatography over silica gel (n-hexane/EtOAc, 8:2).
3-Methoxy-2-(oxiran-2-ylmethoxy)-9H-xanthen-9-one (11a). A white solid (96%), Rf 0.16 (n-hexane/EtOAc, 7:3); mp 143–144 °C. 1H-NMR (500 MHz, CDCl3) δ: 2.81 (dd, J = 4.5, 2.5 Hz, 1H, H-3′), 2.94 (m, 1H, H-3′), 3.44–3.48 (m, 1H, H-2′), 4.00 (s, 3H, OCH3), 4.01 (dd, J = 11.0, 6.0 Hz, 1H, H-1′), 4.40 (dd, J = 11.0, 3.0 Hz, 1H, H-1′), 6.91 (s, 1H, H-4), 7.36 (td, J = 7.5, 0.75 Hz, 1H, H-7), 7.44 (dd, J = 8.5, 0.75 Hz, 1H, H-5), 7.65–7.70 (m, 2H, H-1, H-6), 8.32 (dd, J = 8.0, 2.0 Hz, 1H, H-8). 13C-NMR (125 MHz, CDCl3) δ: 44.7 (C-3′), 49.7 (C-2′), 56.3 (OCH3), 70.1 (C-1′), 99.8 (C-4), 107.1 (C-1), 114.7 (C-9a), 117.6 (C-5), 121.4 (C-8a), 123.7 (C-7), 126.4 (C-8), 133.9 (C-6), 145.6 (C-2), 152.6 (C-4a), 155.7 (C-3), 156.0 (C-4b), 175.9 (CO-9). HRMS (EI+) calculated for C17H14O5: 298.0841. Found: 298.0842.
1-Allyl-3-methoxy-2-(oxiran-2-ylmethoxy)-9H-xanthen-9-one (11b). A white solid (98%), Rf 0.34 (n-hexane/EtOAc, 7:3); mp 115–116 °C. 1H-NMR (500 MHz, CDCl3) δ: 2.73 (dd, J = 5.0, 2.5 Hz, 1H, H-3″), 2.89 (dd, J = 5.0, 4.5 Hz, 1H, H-3″), 3.39–3.42 (m, 1H, H-2″), 3.96–4.00 (m, 4H, H-1″, OCH3), 4.15 (dd, J = 11.0, 3.5 Hz, 1H, H-1″), 4.23–4.31 (m, 2H, H-1′), 4.98 (dq, J = 11.5, 2.0 Hz, 1H, H-3′), 4.99–5.02 (m, 1H, H-3′), 6.16 (ddt, J = 18.0, 11.5, 6.0 Hz, 1H, H-2′), 6.86 (s, 1H, H-4), 7.33 (td, J = 8.0, 1.0 Hz, 1H, H-7), 7.39 (dd, J = 8.0, 1.0 Hz, 1H, H-5), 7.65 (td, J = 8.5, 1.8 Hz, 2H, H-6), 8.27 (dd, J = 8.0, 1.8 Hz, 1H, H-8). 13C-NMR (125 MHz, CDCl3) δ: 30.8 (C-1′), 44.6 (C-3″), 50.4 (C-2″), 56.0 (OCH3), 74.1 (C-1″), 98.8 (C-4), 113.5 (C-9a), 114.5 (C-3′), 116.9 (C-5), 122.5 (C-8a), 123.6 (C-7), 126.7 (C-8), 133.8 (C-6), 135.6 (C-1), 137.5 (C-2′), 142.9 (C-2), 155.0 (C-4b), 155.71 (C-4a), 157.77 (C-3), 177.1 (CO-9). HRMS (EI+) calculated for C20H18O5: 338.1154. Found: 338.1158.
  • General procedure for preparing imidazole-substituted xanthones 12a–f
Imidazoles 13a–c (2.0 mol equiv.) were each added to a solution of the respective alkoxy-substituted xanthone 11a–b (1.0 mol equiv.) in methanol (5 mL) at rt, and the resulting mixture was stirred at reflux for 24 h. After the reaction was completed (as monitored by TLC), the residual mixture was filtered, the solvent was removed under vacuum, and the residue was purified by flash chromatography over silica gel (CH2Cl2/MeOH, 98:02), generating the corresponding product.
2-(2-Hydroxy-3-(1H-imidazol-1-yl)propoxy)-3-methoxy-9H-xanthen-9-one (12a). A white solid (63%), Rf 0.40 (CH2Cl2/MeOH, 9:1); mp 146–148 °C. 1H-NMR (600 MHz, DMSO-d6) δ: 3.90 (dd, J = 9.9, 4.8 Hz, 1H, H-1′), 3.94 (dd, J = 9.9, 5.4 Hz, 1H, H-1′), 3.96 (s, 3H, OCH3), 4.06 (dd, J = 13.8, 7.2 Hz, 1H, H-3′), 4.13 (sept, J = 5.4 Hz, 1H, H-2′), 4.19 (dd, J = 13.8, 3.6 Hz, 1H, H-3′), 5.58 (brs, 1H, OH), 6.87 (s, 1H, H-4″), 7.16 (s, 1H, H-5″), 7.21 (s, 1H, H-4), 7.43 (brt, J = 7.2 Hz, 1H, H-7), 7.49 (s, 1H, H-1), 7.56 (brd, J = 7.8 Hz, 1H, H-5), 7.59 (brs, 1H, H-2″), 7.80 (td, J = 8.4, 1.8 Hz, 1H, H-6), 8.15 (dd, J = 8.4, 1.8 Hz, 1H, H-8). 13C-NMR (150 MHz, DMSO-d6) δ: 49.3 (C-3′), 56.6 (OCH3), 68.2 (C-2′), 70.7 (C-1′), 100.6 (C-4), 106.5 (C-1), 113.9 (C-9a), 117.9 (C-5), 120.1 (C-5″), 120.8 (C-8a), 124.2 (C-7), 125.7 (C-8), 128.1 (C-4″), 134.7 (C-6), 135.2 (C-2″), 145.7 (C-2), 152.5 (C-4a), 155.9 (C-4b), 156.3 (C-3), 175.1 (CO-9). HRMS (EI+) calculated for C20H18N2O5: 366.1216. Found: 366.1206.
2-(2-Hydroxy-3-(2-phenyl-1H-imidazol-1-yl)propoxy)-3-methoxy-9H-xanthen-9-one (12b). A white solid (35%), Rf 0.54 (CH2Cl2/MeOH, 9:1); mp 157–159 °C. 1H-NMR (750 MHz, CDCl3) δ: 3.96 (s, 3H, OCH3), 3.97 (dd, J = 9.4, 6.0 Hz, 1H, H-1′), 4.02 (dd, J = 9.4, 4.5 Hz, 1H, H-1′), 4.22 (dd, J = 13.5, 7.5 Hz, 1H, H-3′), 4.28–4.31 (m, 1H, H-2′), 4.34 (dd, J = 13.5, 4.5 Hz, 1H, H-3′), 5.30 (brs, 1H, OH), 6.88 (s, 1H, H-4), 7.11 (s, 1H, H-4″), 7.19 (s, 1H, H-5″), 7.35–7.42 (m, 4H, H-7, H-3‴, H-4‴), 7.46 (d, J = 8.2 Hz, 1H, H-5), 7.57 (s, 1H, H-1), 7.60 (d, J = 6.7 Hz, 1H, H-2‴), 7.70 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.32 (dd, J = 8.2, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, CDCl3) δ: 49.2 (C-3′), 56.2 (OCH3), 69.4 (C-2′), 70.5 (C-1′), 99.8 (C-4), 107.8 (C-1), 114.7 (C-9a), 117.6 (C-5), 121.43 (C-5″), 121.45 (C-8a), 123.8 (C-7), 126.5 (C-8), 128.52 (C-4″), 128.55 (C-3‴), 128.7 (C-4‴), 129.1 (C-2‴), 130.4 (C-1‴), 134.1 (C-6), 146.2 (C-2), 148.1 (C-2″), 152.8 (C-4a), 155.8 (C-3), 156.0 (C-4b), 175.9 (CO-9). HRMS (EI+) calculated for C29H26N2O5: 442.1529. Found: 442.1521.
2-(3-(2-(4-Chlorophenyl)-1H-imidazol-1-yl)-2-hydroxypropoxy)-3-methoxy-9H-xanthen-9-one (12c). A white solid (75%), Rf 0.76 (CH2Cl2/MeOH, 9:1); mp 235 °C (decomposition). 1H-NMR (750 MHz, DMSO-d6) δ: 3.89 (dd, J = 9.7, 5.2 Hz, 1H, H-1″), 3.92 (s, 3H, OCH3), 3.94 (dd, J = 9.7, 4.5 Hz, 1H, H-1″), 4.15–4.20 (m, 2H, H-2′, H-3′), 4.27–4.32 (m, 1H, H-3′), 5.62 (d, J = 5.2 Hz, 1H, OH), 7.03 (s, 1H, H-4″), 7.21 (s, 1H, H-4), 7.39 (s, 1H, H-5″), 7.42 (s, 1H, H-1), 7.42–7.48 (m, 3H, H-7, H-2‴), 7.62 (d, J = 8.2 Hz, 1H, H-5), 7.64–7.68 (m, 2H, H-3‴), 7.83 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.17 (dd, J = 7.5, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 49.0 (C-3′), 56.4 (OCH3), 68.1 (C-2′), 70.0 (C-1′), 100.4 (C-4), 105.9 (C-1), 113.8 (C-9a), 117.8 (C-5), 120.7 (C-8a), 122.6 (C-5″), 124.1 (C-7), 125.7 (C-8), 127.9 (C-4″), 128.3 (C-3‴), 129.7 (C-1‴), 130.4 (C-2‴), 132.9 (C-4‴), 134.6 (C-6), 145.4 (C-2), 145.9 (C-2″), 152.0 (C-4a), 155.4 (C-4b), 155.6 (C-3), 174.5 (CO-9). HRMS (EI+) calculated for C26H21N2O5Cl: 476.1139. Found: 476.1137.
1-Allyl-2-(2-hydroxy-3-(1H-imidazol-1-yl)propoxy)-3-methoxy-9H-xanthen-9-one (12d). A white solid (78%), Rf 0.45 (CH2Cl2/MeOH, 9:1); mp 187–189 °C. 1H-NMR (500 MHz, DMSO-d6) δ: 3.78 (brd, J = 5.0 Hz, 2H, H-1″), 3.97 (s, 3H, OCH3), 4.01–4.12 (m, 2H, H-2″, H-3″), 4.17 (brd, J = 6.0 Hz, 2H, H-1′), 4.21–4.28 (m, 1H, H-3″), 4.90 (dd, J = 10.0, 2.0 Hz, 1H, H-3′), 4.95 (dc, J = 17.5, 2.0 Hz, 1H, H-3′), 5.43 (d, J = 5.5 Hz, 1H, OH), 6.01 (ddt, J = 16.5, 12.0, 5.5 Hz, 1H, H-2′), 6.93 (brs, 1H, H-4‴), 7.17 (s, 1H, H-4), 7.23 (brs, 1H, H-5‴), 7.43 (td, J = 8.0, 1.0 Hz, 1H, H-7), 7.56 (dd, J = 8.0, 0.5 Hz, 1H, H-5), 7.65 (brs, 1H, H-2‴), 7.80 (td, J = 8.5, 1.8 Hz, 1H, H-6), 8.13 (dd, J = 8.0, 1.8 Hz, 1H, H-8). 13C-NMR (125 MHz, CDCl3) δ: 30.2 (C-1′), 49.3 (C-3″), 56.4 (OCH3), 68.9 (C-2″), 74.4 (C-1″), 99.7 (C-4), 112.3 (C-9a), 114.8 (C-3′), 117.2 (C-5), 120.4 (C-5‴), 121.7 (C-8a), 124.0 (C-7), 126.0 (C-8), 128.3 (C-4‴), 134.1 (C-1), 134.5 (C-6), 137.6 (C-2′), 138.3 (C-2‴), 142.6 (C-2), 154.4 (C-4b), 155.0 (C-4a), 157.8 (C-3), 176.0 (CO-9). HRMS (EI+) calculated for C23H22N2O5: 406.1529. Found: 406.1527.
1-Allyl-2-(2-hydroxy-3-(2-phenyl-1H-imidazol-1-yl)propoxy)-3-methoxy-9H-xanthen-9-one (12e). A white solid (38%), Rf 0.54 (CH2Cl2/MeOH, 9:1); mp 187–189 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 3.77 (dd, J = 9.0, 4.9 Hz, 1H, H-1″), 3.85 (dd, J = 9.0, 4.9 Hz, 1H, H-1″), 3.92 (s, 3H, OCH3), 4.07–4.17 (m, 4H, H-1′, H-2″, H-3″), 4.33 (d, J = 10.5 Hz, 1H, H-3″), 4.84–4.90 (m, 2H, H-3′), 5.55 (brs, 1H, OH), 5.95 (ddt, J = 16.5, 10.5, 6.0 Hz, 1H, H-2′), 7.03 (d, J = 0.7 Hz, 1H, H-4‴), 7.14 (s, 1H, H-4), 7.38–7.43 (m, 3H, H-7, H-5‴, H-4IV), 7.43–7.48 (m, 2H, H-3IV), 7.54 (d, J = 8.2 Hz, 1H, H-5), 7.68–7.15 (m, 2H, H-2IV), 7.79 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.11 (dd, J = 7.5, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 30.1 (C-1′), 49.3 (C-3″), 56.4 (OCH3), 69.0 (C-2″), 74.7 (C-1″), 99.6 (C-4), 112.3 (C-9a), 114.7 (C-3′), 117.2 (C-5), 121.7 (C-8a), 122.1 (C-5‴), 124.0 (C-7), 126.0 (C-8), 127.6 (C-4‴), 128.2 (C-4IV), 128.3 (C-3IV), 128.8 (C-2IV), 131.1 (C-1IV), 134.1 (C-1), 134.5 (C-6), 137.6 (C-2′), 142.5 (C-2), 147.0 (C-2‴), 154.4 (C-4b), 155.0 (C-4a), 157.7 (C-3), 176.0 (CO-9). HRMS (EI+) calculated for C29H26N2O5: 482.1842. Found: 482.1838.
1-Allyl-2-(3-(2-(4-chlorophenyl)-1H-imidazol-1-yl)-2-hydroxypropoxy)-3-methoxy-9H-xanthen-9-one (12f). A white solid (81%), Rf 0.52 (CH2Cl2/MeOH, 9:1); mp 116–118 °C. 1H-NMR (750 MHz, DMSO-d6) δ: 3.78 (dd, J = 9.7, 4.5 Hz, 1H, H-1″), 3.85 (dd, J = 9.7, 4.5 Hz, 1H, H-1″), 3.92 (s, 3H, OCH3), 4.09 (dd, J = 13.5, 6.0 Hz, 1H, H-3″), 4.10–4.16 (m, 3H, H-1′, H-2″), 4.33 (dd, J = 18.0, 7.5 Hz, 1H, H-3″), 4.84–4.90 (m, 2H, H-3′), 5.56 (brs, 1H, OH), 5.95 (ddt, J = 17.2, 10.5, 6.0 Hz, 1H, H-2′), 7.05 (s, 1H, H-4‴), 7.15 (s, 1H, H-4), 7.40–7.45 (m, 2H, H-7, H-5‴), 7.48–7.52 (m, 2H, H-3IV), 7.54 (d, J = 8.2 Hz, 1H, H-5), 7.72–7.76 (m, 2H, H-2IV), 7.79 (td, J = 8.2, 1.5 Hz, 1H, H-6), 8.11 (dd, J = 8.2, 1.5 Hz, 1H, H-8). 13C-NMR (187.5 MHz, DMSO-d6) δ: 30.1 (C-1′), 49.4 (C-3″), 56.4 (OCH3), 69.0 (C-2″), 74.7 (C-1″), 99.7 (C-4), 112.3 (C-9a), 114.6 (C-3′), 117.2 (C-5), 121.7 (C-8a), 122.5 (C-5‴), 124.0 (C-7), 126.0 (C-8), 127.9 (C-4‴), 128.4 (C-3IV), 129.9 (C-1IV), 130.5 (C-2IV), 133.1 (C-4IV), 134.0 (C-1), 134.5 (C-6), 137.6 (C-2′), 142.5 (C-2), 145.9 (C-2‴), 154.4 (C-4b), 155.0 (C-4a), 157.7 (C-3), 176.0 (CO-9). HRMS (EI+) calculated for C29H25ClN2O5: 516.1452. Found: 516.1435.

3.3. Biological Evaluation

3.3.1. α-Glucosidase Inhibition Assay

The inhibitory activity of the compounds on α-glucosidase inhibition was quantified according to the method described by Salehi et al., with slight modifications [64]. A reaction was prepared by mixing 20 µL α-glucosidase solution (0.5 unit/mL), 120 µL 0.1 M phosphate buffer (pH 6.9), and 10 µL of the samples at concentrations from 400 µM to 4.0 µM. The solution was incubated in a 96-well microplate at 37 °C for 15 min. The enzymatic reaction was initiated by adding 20 µL of 5 mM p-NPG solution to 0.1 M phosphate buffer (pH 6.9), followed by incubation at 37 °C for 15 min. The reaction was stopped by adding 80 µL of 0.2 M sodium carbonate solution, and absorbance was read at 405 nm in a microplate reader (Epoch®, BioTek Instrument, Winooski, EUA). The reaction system without any test compounds was used as control, whereas the system without α-glucosidase served as blank for correcting background absorbance. The rate of α-glucosidase inhibition exerted by each sample was calculated with Equation (1):
%   i n h i b i t i o n = C o n t r o l   a b s o r b a n c e s a m p l e   a b s o r b a n c e C o n t r o l   a b s o r b a n c e × 100
All measurements were performed in quadruplicate and the values are expressed as the mean ± standard deviation.

3.3.2. α-Amylase Inhibition Assay

α-Amylase inhibitory activity was quantified according to the method developed by Chokki et al., with some modifications [65]. The reaction mixture consisting of 50 µL of 0.1 M phosphate buffer (pH 6.8), 10 µL of α-amylase solution (5.0 unit/mL), and 20 µL of the sample at various concentrations (from 100 µM to 5.0 µM) was placed in a 96-well plate and pre-incubated at 37 °C for 15 min, and 20 µL of 1% soluble starch (0.1 M phosphate buffer, pH 6.8) was then added as a substrate and incubated at 37 °C for 45 min. Finally, 100 µL of 3,5-dinitrosalicylic acid (DNS) was added and heated at 100 °C for 20 min, and absorbance was then read at 540 nm in a microplate reader (Epoch, BioTek®). The reaction system without any test compound was used as the control, and the system without α-amylase served as a blank for correcting background absorbance. The percentage of α-amylase inhibition was calculated for each sample with Equation (2):
%   i n h i b i t i o n = C o n t r o l   a b s o r b a n c e s a m p l e   a b s o r b a n c e C o n t r o l   a b s o r b a n c e × 100
All measurements were performed in quadruplicate and the values are expressed as the mean ± standard deviation.

3.3.3. Kinetic Study

To explore the type of enzyme inhibition, kinetic studies were carried out with α-glucosidase and α-amylase using a methodology such as that described in the inhibitory activity assays. The alkoxy-substituted xanthones were evaluated at four different concentrations according to their IC50. Various concentrations of substrates were used for each of the enzymes in the range of 0.5–5.0 mM for p-NPG in α-glucosidase and 0.1–1.0% for α-amylase. The type of inhibition for each test compound was determined by utilizing double reciprocal plots. Inhibition constants (KI) were calculated from substrate versus reaction rate curves using nonlinear regression of the enzyme inhibition kinetic function [55,65].

3.4. DPPH Radical Scavenging Assay

The scavenging of free radicals by the synthesized compounds was assessed based on the previously reported DPPH radical assay, with slight modifications [66]. The reaction mixture consisted of 50 µL of compound in DMSO at various concentrations (from 2.5 mM to 0.2 mM) and 150 µL of DPPH solution at 133.33 µM in absolute ethanol. The reaction components were added at a ratio of 1:3 (v/v). The mixture was incubated at 37 °C for 30 min before absorbance was read at 517 nm using a microplate reader (Epoch, BioTek®). Butylhydroxytoulene (BHT) served as the positive control. Scavenging capacity (%) is expressed as the percentage decrease in DPPH.
SC% = [(Acontrol − Atest)/Acontrol] × 100
where Acontrol is absorbance of the DPPH solution (control) and Atest is the absorbance of the solution of DPPH and one of the compounds.

3.5. Docking Studies

The molecular docking studies were carried out in the AutoDock 4 program [67] using the crystallized proteins of isomaltase from Saccharomyces cerevisiae (PDB: 3A4A) and human pancreatic α-amylase (PDB: 1B2Y) in complex with the inhibitor acarbose. In these proteins, water molecules were removed, hydrogen atoms were added to the polar atoms (considering pH at 7.4), and Kollman charges were assigned with AutoDock Tools 1.5.6. The 3D structures of acarbose (14), 1 (natural xanthone), alkoxy-xanthones 6c, 6e, 9a, and 9b, and imidazole-xanthones 10c and 10f were sketched in two dimensions (2D) with ChemSketch and then converted to 3D in a mol2 format using the Open Babel GUI program [68]. The ligands were optimized with PM6 on Gaussian 98 software to obtain the lowest energy conformation. All the possible rotatable bonds, torsion angles, atomic partial charges, and non-polar hydrogens were determined for each ligand. In AutoDockTools, the grid dimensions for α-glucosidase were 78 × 60 × 78 Å3 with points separated by 0.375 Å and centered at X = 26.313, Y = −3.544, and Z = 26.146. The grid dimensions for α-amylase were 90 × 70 × 66 Å3 with points separated by 0.375 Å and centered at X = 16.758, Y = 8.692, and Z = 49.959. The hybrid Lamarckian genetic algorithm was applied for minimization and utilized default parameters. A total of one hundred docking runs were conducted to determine the conformation with the lowest binding energy (kcal/mol), which was adopted for all further simulations. AutoDockTools was used to prepare the script and files as well as to visualize the docking results, and these were edited with the Discovery 4.0 client.

3.6. Physicochemical Properties

The physicochemical properties of compounds 1, 6a, 6c, 6e, 7, 9a–b, 10c, 10f, 11b, and 12b–f and acarbose (14) were generated in silico with OSIRIS DataWarrior V4.7.2 (http://www.organic-chemistry.org/prog/peo/ accessed on 15 January 2023) [59]. Druglikeness was evaluated based on Lipinski’s rule of five [69].

4. Conclusions

Alkoxy- and imidazole-substituted xanthones 6–12 were synthesized and their inhibitory activity on α-glucosidase and α-amylase enzymes was evaluated. Compared to the reference drug acarbose (14), the inhibitory activity of 6c, 6e, and 9b was higher for α-glucosidase and lower for α-amylase, reflecting a desirable outcome. Based on structure–activity analysis of the results, a 4-bromobutoxy or 4′-chlorophenylacetophenone moiety in the molecule favors greater inhibition of α-glucosidase versus α-amylase. In contrast, inserting a 2-(4-chlorophenyl)butoxyimidazole moiety (10c) produces lower α-glucosidase inhibition and higher α-amylase inhibition. The mechanism of the enzymatic inhibition of 6c, 10c, and 9b was determined, establishing that for α-glucosidase they are mixed inhibitors, while for α-amylase, 6c is a competitive inhibitor and 10c is mixed. The docking studies revealed that the π-stacking and hydrophobic effects of the aromatic moiety at the C-2 position of the xanthone backbone play a key role in the interaction with the active sites of both α-glucosidase and α-amylase. Additionally, drug prediction and ADMET studies suggest that compounds 6c, 6e, and 9b are candidates for the development of new selective α-glucosidase inhibitors with antidiabetic potential.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules28104180/s1, Figure S1–S80: 1H and 13C NMR spectra and HRMS of all synthesized compounds; Table S3: Calculated physicochemical properties for compounds 1, 6a, 6c, 6e, 7, 9a–b, 10c, 10f, 11b, 12b–f, and acarbose; Figure S81 and S82: Kinetics found for compounds evaluated against α-glucosidase and α-amylase.

Author Contributions

Conceptualization, A.M.-M.; writing—original draft preparation, A.M.-M.; methodology, F.E.J.-M., M.C.C.-L. and V.E.L.y.L., software, O.G.-G.; formal analysis., O.G.-G. and J.T.; study investigation, D.G.A.-M., G.V.-L., E.S.-T. and D.A.-P.; data curation, C.H.E.; interpretation, C.H.E.; supervision, J.T., O.G.-G. and A.M.-M. All authors contributed to the writing of the manuscript. All authors have read and agreed to the published version of the manuscript.

Funding

The research was supported by the Consejo Nacional de Ciencia y Tecnología (CONACYT, Mexico) (Grants A1-S-17131) and SIP/IPN (Grants 20200227, 20210765, 20201599, 20220999, and 20221403).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented in this study are available in the Supplementary Materials.

Acknowledgments

We thank Elvia Becerra (CNMM-IPN) for her assistance in according to the NMR (600 and 750 MHz) and Bruce A. Larsen for proofreading. D.G.A.-M., G.V.-L., E.S.-T. and C.H.E. are grateful to CONACYT and SIP/IPN (BEIFI) for awarding them scholarships.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Design of alkoxy- and imidazole-substituted xanthones as potential α-amylase and α-glucosidase inhibitors.
Figure 1. Design of alkoxy- and imidazole-substituted xanthones as potential α-amylase and α-glucosidase inhibitors.
Molecules 28 04180 g001
Scheme 1. Synthesis of alkoxy-xanthone derivatives. Conditions: (i) 2-iodobenzoyl chloride, BF3.OEt2, 85 °C, 3 h; (ii) methyl 2-bromoacetate (4a), acetone, K2CO3, 55 °C, 3 h; (iii) DMFDMA, 120 °C, 48 h; (iv). KOH/H2O, 100 °C, 6 h; (v) α-halocarbonyls 4a–c or allyl bromide (4d), acetone, K2CO3, 55 °C, 3 h; (vi) decalin, 200 °C, 12 h; (vii) 1,1-diethoxy-3-methylbut-2-ene, 3-methylpicoline, xylene, 120 °C, 30 h.
Scheme 1. Synthesis of alkoxy-xanthone derivatives. Conditions: (i) 2-iodobenzoyl chloride, BF3.OEt2, 85 °C, 3 h; (ii) methyl 2-bromoacetate (4a), acetone, K2CO3, 55 °C, 3 h; (iii) DMFDMA, 120 °C, 48 h; (iv). KOH/H2O, 100 °C, 6 h; (v) α-halocarbonyls 4a–c or allyl bromide (4d), acetone, K2CO3, 55 °C, 3 h; (vi) decalin, 200 °C, 12 h; (vii) 1,1-diethoxy-3-methylbut-2-ene, 3-methylpicoline, xylene, 120 °C, 30 h.
Molecules 28 04180 sch001
Scheme 2. Synthesis of imidazole xanthones derivatives. Reagents and conditions: (i) 1,4-dibromobutane (for 9a–b) or 4c (for 6e), acetone, K2CO3, 60 °C, 6 h; (ii) epichlorohydrin, KOH, EtOH, reflux, 12 h; (iii) imidazoles 13a–c, acetone, K2CO3, 60 °C, 48 h; (iv) imidazoles 13a–c, MeOH, reflux, 12 h.
Scheme 2. Synthesis of imidazole xanthones derivatives. Reagents and conditions: (i) 1,4-dibromobutane (for 9a–b) or 4c (for 6e), acetone, K2CO3, 60 °C, 6 h; (ii) epichlorohydrin, KOH, EtOH, reflux, 12 h; (iii) imidazoles 13a–c, acetone, K2CO3, 60 °C, 48 h; (iv) imidazoles 13a–c, MeOH, reflux, 12 h.
Molecules 28 04180 sch002
Figure 2. The Lineweaver–Burk plots of 6c, 9b, and 10c against α-glucosidase (A) and α-amylase (B).
Figure 2. The Lineweaver–Burk plots of 6c, 9b, and 10c against α-glucosidase (A) and α-amylase (B).
Molecules 28 04180 g002
Figure 3. Representation of the interactions of alkoxy-substituted xanthones 6c, 6e, and 9b within the active pocket of isomaltase. The 3D models illustrate the interactions with the amino acid residues of the catalytic pocket of the enzyme. In the 2D model, conventional hydrogen (dark green dotted lines) and carbon hydrogen bonds (light green) are portrayed, as well as π-sigma (purple), π-π T-shaped and π-π stacked (fuchsia), π-alkyl and alkyl (pink), and π-anion and π-cation (orange) interactions. The amino acids are depicted with circles of different colors (pink (basic), orange (acid), cyan (polar), and yellow (non-polar)).
Figure 3. Representation of the interactions of alkoxy-substituted xanthones 6c, 6e, and 9b within the active pocket of isomaltase. The 3D models illustrate the interactions with the amino acid residues of the catalytic pocket of the enzyme. In the 2D model, conventional hydrogen (dark green dotted lines) and carbon hydrogen bonds (light green) are portrayed, as well as π-sigma (purple), π-π T-shaped and π-π stacked (fuchsia), π-alkyl and alkyl (pink), and π-anion and π-cation (orange) interactions. The amino acids are depicted with circles of different colors (pink (basic), orange (acid), cyan (polar), and yellow (non-polar)).
Molecules 28 04180 g003aMolecules 28 04180 g003b
Figure 4. Representation of the interactions of imidazole-substituted xanthone derivatives (10c, 10f), natural xanthone 1, and 14 at the active site binding pocket of α-amylase. The 3D models illustrate the interactions with the amino acid residues of the catalytic pocket of the enzyme. In the 2D model, conventional hydrogen (dark green dotted lines) and carbon-hydrogen bonds (light green) are portrayed, as well as π-sigma (purple), π-π T-shaped and π-π stacked (fuchsia), π-alkyl and alkyl (pink), and π-anion and π-cation (orange) interactions. The amino acids are depicted with circles of different colors (pink (basic), orange (acid), cyan (polar), and yellow (non-polar)).
Figure 4. Representation of the interactions of imidazole-substituted xanthone derivatives (10c, 10f), natural xanthone 1, and 14 at the active site binding pocket of α-amylase. The 3D models illustrate the interactions with the amino acid residues of the catalytic pocket of the enzyme. In the 2D model, conventional hydrogen (dark green dotted lines) and carbon-hydrogen bonds (light green) are portrayed, as well as π-sigma (purple), π-π T-shaped and π-π stacked (fuchsia), π-alkyl and alkyl (pink), and π-anion and π-cation (orange) interactions. The amino acids are depicted with circles of different colors (pink (basic), orange (acid), cyan (polar), and yellow (non-polar)).
Molecules 28 04180 g004aMolecules 28 04180 g004b
Table 1. DPPH scavenging and inhibition of α-glucosidase and α-amylase by the test compounds.
Table 1. DPPH scavenging and inhibition of α-glucosidase and α-amylase by the test compounds.
Compounds% DPPH Scavenging Activity
(2.5 mM)
α-Glucosidaseα-Amylase
Inhibition (%) at 400 µMIC50 (µM)Inhibition (%) at 100 µMIC50 (µM)
132.6 ± 2.03 C26.5 ± 0.81>400 A98.7 ± 0.1126.5 ± 0.01 E
513.9 ± 1.14 E,F15.2 ± 0.16>400 ANI-
6a1.7 ± 0.91 H,I99.5 ± 0.2143.6 ± 0.17 H8.7 ± 0.2>200 A*
6b11.8 ± 1.07 F,G9.3 ± 0.1>400 ANA-
6c8.7 ± 0.67 G92.6 ± 0.1116.0 ± 0.03 N64.8 ± 0.1576.7 ± 0.03 B
6d3.9 ± 0.58 H,I22.1 ± 1.04>400 ANI-
6e10.4 ± 0.83 F,G98.6 ± 0.9012.8 ± 0.01 O60.3 ± 0.168.1 ± 0.04 D
745.9 ± 2.89 B†75.5 ± 0.50196.4 ± 0.07 F7.8 ± 0.1>200 A
81.9 ± 0.73 H,I38.3 ± 0.04>400 ANI-
9a19.5 ± 1.22 D97.8 ± 0.340.0 ± 0.018 M62.9 ± 0.273.5 ± 0.04 C
9b17.6 ± 1.17 D96.3 ± 0.24.00 ± 0.007 P3.87 ± 0.11>200 A
10a0.8 ± 0.01 I1.3 ± 0.01>400 ANI-
10b12.2 ± 0.08 F,G90.2 ± 0.21212.4 ± 0.1 D9.7 ± 0.21>200 A
10c11.6 ± 1.54 F,G95.1 ± 0.15232.7 ± 0.11 C99.5 ± 0.105.4 ± 0.07 H
10d5.1 ± 0.08 H2.5 ± 0.01>400 ANI-
10f11.2 ± 1.02 F,G99.4 ± 0.51145.2 ± 0.17 G93.3 ± 0.128.7 ± 0.06 G
11a19.8 ± 1.04 D0.48 ± 0.02>400 ANI-
11b18.4 ± 1.43 D99.7 ± 0.29120.0 ± 0.03 I7.8 ± 0.5>200 A
12a1.1 ± 0.01 I1.87 ± 0.47>400 ANI-
12b16.3 ± 1.45 D,E84.9 ± 0.57112.8 ± 0.12 J8.7 ± 0.81>200 A
12c19.0 ± 0.22 D97.5 ± 1.78210.9 ± 0.33 E3.9 ± 0.55>200 A
12d10.1 ± 0.87 G52.2 ± 0.87400.2 ± 0.24 A1.5 ± 0.10>200 A
12e17.6 ± 1.14 D96.6 ± 1.45104.9 ± 0.01 K2.4 ± 0.15>200 A
12f18.1 ± 1.57 D99.1 ± 1.3171.9 ± 0.08 L4.7 ± 0.32>200 A
BHT85.2 ± 3.33 A‡NDNDNDND
AcarboseND63.18 ± 0.7306.7 ± 0.9 B99.3 ± 0.0620.0 ± 0.07 F
Data represent the mean ± standard deviation (n = 4). Means in a column not sharing the same letter are significantly different at p ˂ 0.5 probability according to Tukey tests. NI = no inhibition; * compounds precipitate at 200 µM; IC50 = 2.87 ± 0.03 mM; IC50 = 0.84 ± 0.025 mM; ND = not determined.
Table 2. Docking results of alkoxy-substituted xanthones 6c, 6e, and 9b and acarbose (14) at the active site binding pocket of isomaltase.
Table 2. Docking results of alkoxy-substituted xanthones 6c, 6e, and 9b and acarbose (14) at the active site binding pocket of isomaltase.
CompoundBinding Energy ΔG (kcal/mol)Interacting ResiduesPolar InteractionsHydrophobic Interactions
14−7.78Asp69, Tyr72, His112, Tyr158, Phe159, Phe178, Arg213, Asp215, Val216, Glu277, Gln279, His280, Phe303, Asp307, Arg315, Tyr316, His351, Asp352, Gln353, Glu411, Arg442, Arg446C-H…..O (Asp69)
O-H….O (Aps215)
O…..H-N (Gln279)
O-H…..O (Asp307)
O…..H-N (His351)
O-H…..O (Glu411)
O…..H-N (Arg446)
-
6c−9.17Tyr72, His112, Val216, Gln279, Phe303, Arg315, Asp352, Glu411, Arg442O…..H-N (Gln279)
C-H…..O (Asp352)
O…..C-H (Arg442)
π-alkyl-Tyr72, His112, Phe178, Val216
π-sigma-Arg315
π-cation-Arg315
π-anion-Asp352
6e−9.41Tyr72, His112, Val216, Gln279, Arg315, Asp352, Arg442O…..H-N (Gln279)
C-H…..O (Asp352)
π-alkyl-Tyr72, His112, Val216, Arg315
π-π T-shaped-Tyr72
π-π stacked-Phe303
π-cation-Arg442
π-anion-Asp215, Glu277, Glu411
9b−7.89Tyr158, Phe303, Thr310, Arg315, Asp352, Glu411, Arg442Halogen (Thr310)
O…..C-H (Arg315)
C-H…..O (Glu411)
π-π T-shaped-Tyr158
π-alkyl-Phe303
alkyl-Arg315
π-cation-Arg442
π-anion-Asp352, Glu411
Table 3. Docking results of imidazole-substituted xanthones 10c and 10f, natural xanthone 1, and acarbose (14) at the active site binding pocket of α-amylase.
Table 3. Docking results of imidazole-substituted xanthones 10c and 10f, natural xanthone 1, and acarbose (14) at the active site binding pocket of α-amylase.
CompoundBinding Energy ΔG (kcal/mol)Interacting ResiduesPolar InteractionsHydrophobic Interactions
14−2.92Asp197, Glu233, Asp300, His305O-H……O (Asp197)
O-H……O (Glu233)
C-H……O (Glu233)
O-H……O (Asp300)
C-H……O (Asp300)
O……H-N (His305)
-
1−6.08Trp59, Tyr62, Asp197, Glu233, His299, Asp300O-H……O (Asp197)
C-H……O (Glu233)
C-H……O (Asp300)
π-π stacked-Trp59, Tyr62
π-alkyl-His299
10c−9.82Trp59, Tyr62, His101, Leu162, Asp197, Ala198, His299, Asp300, His305C-H……O (Asp197)
C-H……O (His299)
C-H……O (Asp300)
π-π stacked-Trp59, Tyr62
π-alkyl-His101
alkyl-Leu162
π-anion-Asp300
10f−9.66Trp59, Tyr62, Tyr151, Leu162, Leu165, Asp197, Ala198, Lys200, His201, Ile235C-H……O (Asp197)π-π stacked-Tyr62, Tyr151
π-π T-shaped-His201
π-alkyl-Trp59, Tyr62, Leu162, Ala198, His201, Ile235
alkyl-Ala198, Lys200, Ile235
π-sigma-Leu162, Leu165
Table 4. Prediction of the druglikeness and ADMET properties of the most potent compounds.
Table 4. Prediction of the druglikeness and ADMET properties of the most potent compounds.
Druglikeness/
ADMET a
Compound
6c6e9a9b10c10f
Rule of fiveSuitableSuitableSuitableSuitableSuitableViolated
Caco-235.30942.156624.214625.810853.563754.9387
HIA97.40718297.51058597.57176397.75718797.68819797.911873
BBB0.9248970.3559460.0920180.2829530.0774220.105351
Skin permeability−2.79698−2.25319−2.84173−2.30488−2.76965−2.19626
Ames testMutagenNon-mutagenMutagenNon-mutagenNon-mutagenNon-mutagen
Carcino mouseNegativeNegativeNegativeNegativeNegativeNegative
Carcino ratNegativeNegativePositivePositiveNegativeNegative
hERG inhibitionMedium riskMedium riskMedium riskMedium riskMedium riskMedium risk
a The recommended ranges for the parameters are as follows: Caco-2: ˂25 is poor, >500 is high; HIA: >80% is high, ˂25% is poor; BBB = −3.0 to 1.2; skin permeability = −8.0 to −1.
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Aguila-Muñoz, D.G.; Vázquez-Lira, G.; Sarmiento-Tlale, E.; Cruz-López, M.C.; Jiménez-Montejo, F.E.; López y López, V.E.; Escalante, C.H.; Andrade-Pavón, D.; Gómez-García, O.; Tamariz, J.; et al. Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules 2023, 28, 4180. https://doi.org/10.3390/molecules28104180

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Aguila-Muñoz DG, Vázquez-Lira G, Sarmiento-Tlale E, Cruz-López MC, Jiménez-Montejo FE, López y López VE, Escalante CH, Andrade-Pavón D, Gómez-García O, Tamariz J, et al. Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules. 2023; 28(10):4180. https://doi.org/10.3390/molecules28104180

Chicago/Turabian Style

Aguila-Muñoz, Dolores G., Gabriel Vázquez-Lira, Erika Sarmiento-Tlale, María C. Cruz-López, Fabiola E. Jiménez-Montejo, Víctor E. López y López, Carlos H. Escalante, Dulce Andrade-Pavón, Omar Gómez-García, Joaquín Tamariz, and et al. 2023. "Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors" Molecules 28, no. 10: 4180. https://doi.org/10.3390/molecules28104180

APA Style

Aguila-Muñoz, D. G., Vázquez-Lira, G., Sarmiento-Tlale, E., Cruz-López, M. C., Jiménez-Montejo, F. E., López y López, V. E., Escalante, C. H., Andrade-Pavón, D., Gómez-García, O., Tamariz, J., & Mendieta-Moctezuma, A. (2023). Synthesis and Molecular Docking Studies of Alkoxy- and Imidazole-Substituted Xanthones as α-Amylase and α-Glucosidase Inhibitors. Molecules, 28(10), 4180. https://doi.org/10.3390/molecules28104180

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