Comparative Analysis of Serum microRNA in Diagnosed Ocular Sarcoidosis versus Idiopathic Uveitis with Ocular Manifestations of Sarcoidosis
Abstract
:1. Introduction
2. Results
2.1. Demographics
2.2. Differential Expression of Serum miRNAs and Pathway Analysis in Patients with Diagnosed Ocular Sarcoidosis versus Healthy Controls
2.3. Differential Expression of Serum miRNAs and Pathway Analysis in Patients with Suspected Ocular Sarcoidosis versus Healthy Controls
2.4. Differential Expression of Serum miRNAs in Diagnosed Ocular Sarcoidosis versus Suspected Ocular Sarcoidosis
2.5. Classification of Patients by Machine Learning
3. Discussion
4. Materials and Methods
4.1. Ethics Statement
4.2. Subjects
4.3. Extraction of RNA from Serum Sample and Microarray Analysis
4.4. Cluster Analysis and Venn Diagrams
4.5. Pathway Analysis
4.6. Machine Learning
4.7. Statistical Analysis
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Healthy Controls | Diagnosed Ocular Sarcoidosis | Suspected Ocular Sarcoidosis | p-Value | |
---|---|---|---|---|
Number | 16 | 11 | 10 | |
Age (mean ± SD) | 57.1 ± 10.3 | 61.5 ± 13.0 | 59.4 ± 13.0 | 0.629 ** |
Age range (years) | 36–71 | 36–75 | 36–74 | |
Bilateral uveitis | NA | 11 | 10 | ND |
Panuveitis | NA | 11 | 10 | ND |
Gender (men/women) | 7/9 | 5/6 | 1/9 | 0.149 ¶ |
sIL-2R (U/mL) (141–394) * | NA | 784.7 ± 278.8 | 387.2 ± 141.7 | <0.001 ‡ |
ACE (U/L) (7–25) * | NA | 28.5 ± 14.9 | 18.8 ± 4.7 | 0.043 ‡ |
BHL (present/absent) | NA | 9/2 | 0/10 | <0.001 ‡‡ |
miRNA | Fold Change | p-Value |
---|---|---|
hsa-miR-455-3p | 3.67 | 9.96 × 10−6 |
hsa-let-7b-5p | 3.65 | 0.0072 |
hsa-miR-5000-5p | 2.71 | 0.0003 |
hsa-miR-6716-3p | 2.62 | 0.0003 |
hsa-miR-6806-3p | 2.57 | 0.0012 |
hsa-miR-106a-5p | 2.52 | 0.0015 |
hsa-miR-4663 | 2.51 | 3.74 × 10−5 |
hsa-miR-548a-3p | 2.37 | 0.0015 |
hsa-miR-450b-5p | 2.36 | 0.0002 |
hsa-miR-17-5p | 2.33 | 0.0084 |
hsa-let-7c-5p | 2.25 | 0.0458 |
hsa-miR-4674 | −2.01 | 3.01 × 10−5 |
hsa-miR-185-3p | −2.05 | 0.0112 |
hsa-miR-378h | −2.12 | 0.0077 |
hsa-miR-3197 | −2.19 | 0.0386 |
hsa-miR-1184 | −2.82 | 1.95 × 10−6 |
hsa-miR-4668-5p | −41.1 | 3.42 × 10−16 |
hsa-miR-3613-3p | −41.96 | 5.33 × 10−13 |
miRNA | Fold Change | p-Value |
---|---|---|
hsa-miR-455-3p | 4.61 | 2.33 × 10−10 |
hsa-miR-4663 | 3.1 | 0.0001 |
hsa-miR-6806-3p | 2.74 | 4.05 × 10−5 |
hsa-miR-450b-5p | 2.71 | 0.0003 |
hsa-miR-5189-3p | 2.42 | 6.62 × 10−5 |
hsa-miR-6716-3p | 2.27 | 0.0002 |
hsa-miR-5000-5p | 2.26 | 0.0024 |
hsa-miR-6805-5p | −2.03 | 0.0011 |
hsa-miR-22-3p | −2.03 | 0.0123 |
hsa-miR-23a-3p | −2.07 | 0.0435 |
hsa-miR-1184 | −2.28 | 0.0021 |
hsa-miR-185-3p | −2.33 | 0.0248 |
hsa-miR-425-5p | −2.57 | 0.0006 |
hsa-miR-3621 | −2.76 | 0.0006 |
hsa-miR-4467 | −2.91 | 0.0004 |
hsa-miR-191-5p | −4.06 | 8.91 × 10−6 |
hsa-miR-3613-3p | −31.43 | 3.88 × 10−11 |
hsa-miR-4668-5p | −34.86 | 7.07 × 10−15 |
Predicted HS | Predicted S | Predicted SS | |
---|---|---|---|
actual HS | 16 | 0 | 0 |
actual S | 1 | 7 | 3 |
actual SS | 1 | 3 | 6 |
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Saito, S.; Keino, H.; Takasaki, I.; Abe, S.; Kohno, H.; Ichihara, K.; Hayashi, I.; Nakayama, M.; Tsuboshita, Y.; Miyoshi, S.; et al. Comparative Analysis of Serum microRNA in Diagnosed Ocular Sarcoidosis versus Idiopathic Uveitis with Ocular Manifestations of Sarcoidosis. Int. J. Mol. Sci. 2022, 23, 10749. https://doi.org/10.3390/ijms231810749
Saito S, Keino H, Takasaki I, Abe S, Kohno H, Ichihara K, Hayashi I, Nakayama M, Tsuboshita Y, Miyoshi S, et al. Comparative Analysis of Serum microRNA in Diagnosed Ocular Sarcoidosis versus Idiopathic Uveitis with Ocular Manifestations of Sarcoidosis. International Journal of Molecular Sciences. 2022; 23(18):10749. https://doi.org/10.3390/ijms231810749
Chicago/Turabian StyleSaito, Shoko, Hiroshi Keino, Ichiro Takasaki, Shinya Abe, Hideo Kohno, Kousuke Ichihara, Isami Hayashi, Makiko Nakayama, Yukihiro Tsuboshita, Sawako Miyoshi, and et al. 2022. "Comparative Analysis of Serum microRNA in Diagnosed Ocular Sarcoidosis versus Idiopathic Uveitis with Ocular Manifestations of Sarcoidosis" International Journal of Molecular Sciences 23, no. 18: 10749. https://doi.org/10.3390/ijms231810749
APA StyleSaito, S., Keino, H., Takasaki, I., Abe, S., Kohno, H., Ichihara, K., Hayashi, I., Nakayama, M., Tsuboshita, Y., Miyoshi, S., Okamoto, S., & Okada, A. A. (2022). Comparative Analysis of Serum microRNA in Diagnosed Ocular Sarcoidosis versus Idiopathic Uveitis with Ocular Manifestations of Sarcoidosis. International Journal of Molecular Sciences, 23(18), 10749. https://doi.org/10.3390/ijms231810749