Rediscovery of Five Rinodina Species Originally Described from Southwest China and One New Species
Abstract
:1. Introduction
2. Materials and Methods
2.1. Morphological and Chemical Study
2.2. DNA Extraction, Purification, and Sequencing
2.3. Phylogenetic Analysis
3. Results and Discussion
4. Taxonomy
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Locality | Voucher Specimens | GenBank Numbers | References | ||
---|---|---|---|---|---|---|
nrITS | mtSSU | nrLSU | ||||
Acolium karelicum | unknown | UPS Hermansson 16472 | KX512897 | na | KX512879 | [56] |
Acroscyphus sphaerophoroides 1 | unknown | UPS Obermayer 6077 | KX512898 | KX512984 | na | [56] |
A. sphaerophoroides 2 | unknown | TNS Shimizu | AY450562 | na | na | [57] |
Allocalicium adaequatum | UPS Spribille 14143 | KX512906 | KX512986 | KX512859 | [56] | |
Amandinea punctata 1 | Japan, Tokyo | TNS YO6843 | LC669587 | na | na | [58] |
A. punctata 2 | Japan, Tokyo | TNS YO6855 | LC669588 | na | na | [58] |
Anaptychia bryorum | Bhutan, Thimphu | Soehting 8378 | EF582777 | EF582825 | na | [59] |
A. ciliaris | Spain | MAF-Lich 17758 | KC559095 | na | na | [60] |
Baculifera remensa | S Prieto | na | KX512962 | KX512881 | [56] | |
Buellia disciformis 1 | Jämtland, Klaxåsen | Wedin 6155 | AY143392 | AY143401 | na | [61] |
B. disciformis 2 | Sweden | UPS A. Nordin 4429 | AF540498 | na | na | [9] |
B. elegans | unknown | S Hansen | KX512901 | KX512993 | na | [56] |
B. erubescens | unknown | S Wetmore 95879 | KX512902 | KX512969 | KX512874 | [56] |
B. frigida | unknown | S Westberg | KX512903 | KX512992 | KX512852 | [56] |
B. polita 1 | China, Sichuan | KUN-L XY20-341 | OP526814 | OP526788 | OP526772 | |
B. polita 2 | China, Yunnan | KUN-L 15-47741 | OP526792 | OP526774 | OP526763 | |
B. polita 3 | China, Sichuan | KUN-L 19-62813 | OP526800 | OP526780 | OP526768 | |
B. polita 4 | China | KUN-L 14-43546 | MN615679 | na | na | |
B. polita 5 | China | KUN-L 15-48012 | MN615678 | na | na | |
B. polita 6 | China | KUN-L 13-41328 | MN615677 | na | na | |
B. setschwana 1 | China, Yunnan | KUN-L 15-48032 | OP526796 | na | na | |
B. setschwana 2 | China, Yunnan | KUN-L 15-47744 | OP526794 | na | na | |
B. setschwana 3 | China, Yunnan | KUN-L 15-47743 | OP526793 | OP526775 | OP526764 | |
B. tesserata | unknown | S Tehler 7323 | KX512904 | na | KX512885 | [56] |
Calicium abietinum | unknown | UPS Tibell 25061 | KX512905 | KX512971 | KX512872 | [56] |
C. corynellum | unknown | S Prieto | KX512908 | KX512985 | KX512855 | [56] |
Coscinocladium gaditanum 1 | Spain | MAF 9855 | AY449720 | AY464073 | na | [62] |
C. gaditanum 2 | Spain | MAF 9856 | AY449721 | AY464074 | na | [62] |
Culbersonia nubila 1 | South Africa | ALV14224 | MH121317 | na | MH121319 | [63] |
C. nubila 2 | South Africa | ALV14225 | MH121318 | na | MH121320 | [63] |
Dimelaena oreina | unknown | S Lendemer 4193 | KX512922 | KX512976 | KX512867 | [56] |
Diplotomma alboatrum | unknown | S Prieto 3034 | KX512924 | KX512966 | KX512877 | [56] |
Heterodermia diademata | Bolivia, Depto. Beni | B K. Bach, M. Kesseler and Portugal 389 | AF540518 | na | na | [9] |
H. vulgaris | unknown | DUKE AFTOL-320 | HQ650704 | na | DQ883798 | [64,65] |
Hyperphyscia adglutinata | unknown | BCN-Lich 17031 | AF250795 | GU247189 | na | [66] |
H. crocata | South Korea | 120413 | MN150490 | na | na | [67] |
Kashiwadia orientalis 1 | Eastern Asia | Hur 040044 | na | KM397366 | na | [68] |
K. orientalis 2 | Eastern Asia | Hur 040164 | na | KM397365 | na | [68] |
Mobergia calculiformis 1 | Mexico | Moberg 10412 | AF224359 | na | na | [69] |
M. calculiformis 2 | unknown | M231 | AF250796 | na | na | [66] |
Oxnerella safavidiorum | Iran | KW-L 70300 | KM410153 | KM410156 | na | [70] |
Phaeophyscia endococcinodes | South Korea | 130163 | MN150503 | na | na | [67] |
P. sciastra | Norway, Sor-Trondelag | O-L-196352 | MK812372 | na | na | [71] |
Phaeorrhiza nimbosa | China, Xizang | KUN-L 19-65695 | MW133637 | MW133652 | MW133660 | [72] |
P. sareptana | China, Gansu | KUN-L 18-59809 | MW133625 | MW133640 | MW133654 | [72] |
Physcia adscendens | Norway, Vestfold | O-L-198947 | MK812201 | na | na | [71] |
P. tenella 1 | Gästrikland | S Odelvik and Hellstrom 0827 | KX512932 | KX512974 | KX512869 | [56] |
P. tenella 2 | Finland | Lohtander 650 | AF224425 | EF582800 | na | [59] |
Physciella chloantha 1 | Iberian Peninsula | BCN-Lich 15525 | GU247166 | GU247200 | na | |
P. chloantha 2 | Iberian Peninsula | BCN-Lich 17033 | GU247164 | GU247198 | na | |
Physconia enteroxantha | Norway, Akershus | O-L-196328 | MK812142 | na | na | [71] |
P. grisea | Morocco, Imli | Staro192 | LS483208 | na | na | [71] |
Pseudothelomma ocellatum 1 | unknown | S Tehler 8063 | KX512934 | KX512957 | KX512862 | [56] |
P. ocellatum 2 | unknown | UPS Hermansson 18662 | KX512935 | KX512952 | KX512891 | [56] |
Pyxine himalayensis | China, Yunnan | KUN-L 12-36055 | KY611881 | KY751388 | na | [73] |
P. subcinerea | China, Taiwan | KUN-L 15-49012 | KY611867 | KY751374 | na | [73] |
Rinodina cana | unknown | Sipman 63008 | MN587029 | na | na | [74] |
R. conradii | China, Yunnan | KUN-L 13-40531 | OP526791 | OP526773 | na | |
R. cornutula 1 | China, Yunnan | KUN-L XY20-3571 | OP526815 | OP526789 | na | |
R. cornutula 2 | China, Yunnan | KUN-L XY20-3572 | OP526816 | OP526790 | na | |
R. gennarii | Netherlands, Utrecht | B H. Sipman 44435 | AJ544187 | na | na | [9] |
R. globulans 1 | China, Yunnan | KUN-L 15-47871 | OP526795 | OP526776 | na | |
R. globulans 2 | China, Yunnan | KUN-L XY20-171 | OP526807 | OP526785 | OP526770 | |
R. globulans 3 | China, Yunnan | KUN-L XY20-117 | OP526805 | na | na | |
R. globulans 4 | China, Sichuan | KUN-L XY20-279 | OP526810 | na | na | |
R. globulans 5 | China, Sichuan | KUN-L XY20-280 | OP526811 | na | na | |
R. handelii 1 | China, Yunnan | KUN-L XY20-224 | OP526808 | na | na | |
R. handelii 2 | China, Yunnan | KUN-L XY20-238-1 | OP526809 | na | na | |
R. mniaroea 1 | USA, Idaho | GZU Spribille 15242 | KX015687 | KX015706 | na | [12] |
R. mniaroea 2 | USA, Montana | GZU Spribille 20391 | KX015692 | KX015711 | na | [12] |
R. mniaroea 3 | Norway, Svalbard | TROM_L_565871 | MK812098 | na | na | [71] |
R. mniaroea 4 | unknown | M249 | AF250811 | na | na | [66] |
R. mniaroeiza | Canada | GZU V. Wagner 15.07.06/1 | KX015691 | KX015710 | na | [12] |
R. moziana 1 | Australia, Queensland | GZU H. Mayrhofer 11742 | DQ849306 | na | na | [75] |
R. moziana 2 | New Zealand, Nelson | GZU M. Lambauer 0214 | DQ849305 | na | na | [75] |
R. oxydata 1 | Australia, Queensland | GZU H. Mayrhofer 11790 | DQ849311 | na | na | [75] |
R. oxydata 2 | Australia, Queensland | GZU H. Mayrhofer 11406 | DQ849313 | na | na | [75] |
R. oxydata 3 | New Zealand, Nelson | GZU M. Lambauer 0206 | DQ849310 | na | na | [75] |
R. oxydata 4 | Austria, Steiermark | GZU H. Mayrhofer 13.930 | AF540548 | na | na | [9] |
R. oxydata 5 | Austria, Styria | GZU H. Mayrhofer 15761 | DQ849312 | na | na | [75] |
R. pluriloculata 1 | China, Yunnan | KUN-L XY20-162 | OP526806 | OP526784 | na | |
R. pluriloculata 2 | China, Yunnan | KUN-L 20-66417 | OP526802 | OP526782 | na | |
R. sophodes 1 | Austria, Styria | GZU 000272661 | GU553304 | GU553321 | na | [10] |
R. sophodes 2 | Austria, Steiermark | GZU P. Bilovitz 968 | AF540550 | na | na | [9] |
R. orientalis 1 | South Korea | KBA BDNA-L-0000284 | MW832807 | na | na | [76] |
R. orientalis 2 | South Korea | KBA BDNA-L-0000653 | MW832808 | na | na | [76] |
R. salicis 1 | South Korea | KBA BDNA-L-0000558 | MW832810 | na | na | [76] |
R. salicis 2 | South Korea | KBA BDNA-L-0000560 | MW832811 | na | na | [76] |
R. hengduanensis 1 | China, Sichuan | KUN-L 20-66506 | OP526803 | OP526783 | na | |
R. hengduanensis 2 | China, Yunnan | KUN-L XY20-44 | OP526804 | na | na | |
R. hengduanensis 3 | China, Sichuan | KUN-L XY20-290 | OP526813 | OP526787 | na | |
R. hengduanensis 4 | China, Sichuan | KUN-L XY20-287 | OP526812 | OP526786 | OP526771 | |
R. zeorina 1 | South Korea | KBA BDNA-L-0000642 | MW832812 | na | na | [76] |
R. zeorina 2 | South Korea | KBA BDNA-L-0000646 | MW832813 | na | na | [76] |
Rinodinella controversa 1 | unknown | M281 | AF250814 | na | na | [66] |
R. controversa 2 | Greece, Kreta | GZU Mayrhofer and Ertl 13.74 | AJ421423 | na | na | [77] |
Tetramelas pulverulentus | unknown | UPS Nordin 6368 | KX512940 | KX512983 | KX512860 | [56] |
Texosporium sancti-jacobi | unknown | UPS Rosentreter and De Bolt 6514 | KX512941 | KX512981 | KX512863 | [56] |
Thelomma mammosum | unknown | UPS Tibell 23775 | KX512942 | KX512954 | KX512888 | [56] |
T. santessonii | unknown | UPS Nordin 4011 | KX512944 | KX512951 | KX512889 | [56] |
Tholurna dissimilis | unknown | UPS Wedin 6330 | AY143397 | AY143407 | KX512893 | [56] |
Tornabea scutellifera 1 | Spain | AFTOL-ID 1061 | JQ301698 | na | DQ973037 | [11,65] |
T. scutellifera 2 | unknown | UPS Tibell 23833 | KX512946 | KX512970 | KX512873 | [56] |
Xanthoria aureola | Sweden, Bohuslän | E. Gaya etc. (BCN) | JQ301690 | JQ301526 | JQ301585 | [12] |
Xanthoria parietina | Sweden, Bohuslän | E. Gaya etc. (BCN) | JQ301691 | JQ301530 | JQ301589 | [12] |
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Share and Cite
Zhong, Q.; Ai, M.; Worthy, F.R.; Yin, A.; Jiang, Y.; Wang, L.; Wang, X. Rediscovery of Five Rinodina Species Originally Described from Southwest China and One New Species. Diversity 2023, 15, 705. https://doi.org/10.3390/d15060705
Zhong Q, Ai M, Worthy FR, Yin A, Jiang Y, Wang L, Wang X. Rediscovery of Five Rinodina Species Originally Described from Southwest China and One New Species. Diversity. 2023; 15(6):705. https://doi.org/10.3390/d15060705
Chicago/Turabian StyleZhong, Qiuyi, Min Ai, Fiona Ruth Worthy, Ancheng Yin, Yi Jiang, Lisong Wang, and Xinyu Wang. 2023. "Rediscovery of Five Rinodina Species Originally Described from Southwest China and One New Species" Diversity 15, no. 6: 705. https://doi.org/10.3390/d15060705
APA StyleZhong, Q., Ai, M., Worthy, F. R., Yin, A., Jiang, Y., Wang, L., & Wang, X. (2023). Rediscovery of Five Rinodina Species Originally Described from Southwest China and One New Species. Diversity, 15(6), 705. https://doi.org/10.3390/d15060705