Modified U-NET Architecture for Segmentation of Skin Lesion
Abstract
:1. Introduction
- A modified U-Net architecture has been proposed for the segmentation of lesions from skin disease using dermoscopy images.
- The data augmentation technique has been performed to increase the randomness of images for better stability.
- The proposed model is validated with different optimizers, batch sizes, and epochs for better accuracy.
- The proposed model has been analyzed with various performance parameters such as Jaccard Index, Dice Coefficient, Precision, Recall, Accuracy and Loss.
2. Materials and Methods
2.1. Dataset
2.2. Data Augmentation
2.3. Modified U-Net Architecture
3. Results and Discussion
3.1. Result Analysis Based on Different Optimizers
3.1.1. Analysis of Training Loss and Accuracy
3.1.2. Visual Analysis of Segmented Images
3.1.3. Analysis of Confusion Matrix Parameters
3.2. Result Analysis Based on Different Optimizers
3.2.1. Analysis of Training Loss and Accuracy
3.2.2. Analysis of Training Loss and Accuracy
3.2.3. Analysis of Confusion Matrix Parameters
3.3. Result Analysis Based on Different Epochs with the Adam Optimizer and Batch Size 8
3.3.1. Analysis of Confusion Matrix Parameters
3.3.2. Visual Analysis of Segmented Images
3.3.3. Analysis of Confusion Matrix Parameters
3.4. Comparison with State-of-the-Art Techniques
4. Conclusions and Future Scope
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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S. No. | Layers | Input Image Size | Filter Size | No. of Filter | Activation Function | Output Image Size | Parameters |
---|---|---|---|---|---|---|---|
1 | Input Image | 192 × 256 × 3 | - | - | - | - | - |
2 | Conv_1 | 192 × 256 × 3 | 3 × 3 | 64 | ReLU | 192 × 256 × 64 | 1792 |
3 | Batch Normalization | 192 × 256 × 64 | - | - | - | - | 256 |
4 | Conv 2 | 192 × 256 × 3 | 3 × 3 | 64 | ReLU | 192 × 256 × 64 | 36,928 |
5 | Batch Normalization | 192 × 256 × 64 | - | - | - | - | 256 |
6 | MaxPooling | 192 × 256 × 64 | 3 × 3 | - | - | 96 × 128 × 64 | 0 |
7 | Conv_3 | 96 × 128 × 128 | 3 × 3 | 128 | ReLU | 96 × 128 × 128 | 73,856 |
8 | Batch Normalization | 96 × 128 × 128 | - | - | - | - | 512 |
9 | Conv 4 | 96 × 128 × 128 | 3 × 3 | 128 | ReLU | 96 × 128 × 128 | 147,584 |
10 | Batch Normalization | 96 × 128 × 128 | - | - | - | - | 512 |
11 | MaxPooling | 96 × 128 × 128 | 3 × 3 | - | - | 48 × 64 × 128 | 0 |
12 | Conv 5 | 48 × 64 × 256 | 3 × 3 | 256 | ReLU | 48 × 64 × 256 | 295,168 |
13 | Batch Normalization | 48 × 64 × 256 | - | - | - | - | 1024 |
14 | Conv 6 | 48 × 64 × 256 | 3 × 3 | 256 | ReLU | 96 × 128 × 128 | 590,080 |
15 | Batch Normalization | 48 × 64 × 256 | - | - | - | - | 1024 |
16 | MaxPooling | 48 × 64 × 256 | 3 × 3 | - | - | 48 × 64 × 128 | |
17 | Conv 7 | 48 × 64 × 256 | 3 × 3 | 256 | ReLU | 96 × 128 × 128 | 590,080 |
18 | Batch Normalization | 48 × 64 × 256 | - | - | - | - | 1024 |
19 | MaxPooling | 48 × 64 × 256 | 3 × 3 | - | - | 24 × 32 × 256 | 0 |
20 | Conv 8 | 24 × 32 × 512 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 1,180,160 |
21 | Batch Normalization | 24 × 32 × 512 | - | - | - | - | 2048 |
22 | Conv 9 | 24 × 32 × 512 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 2,359,808 |
23 | Batch Normalization | 24 × 32 × 512 | - | - | - | - | 2048 |
24 | Conv 10 | 24 × 32 × 512 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 2,359,808 |
25 | Batch Normalization | 24 × 32 × 512 | - | - | - | - | 2048 |
26 | MaxPooling | 24 × 32 × 512 | 3 × 3 | - | - | 12 × 16 × 512 | 0 |
27 | Conv 11 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 2,359,808 |
28 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
29 | Conv 12 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 2,359,808 |
30 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
31 | Conv 13 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 2,359,808 |
32 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
33 | MaxPooling | 12 × 16 × 512 | 3 × 3 | - | - | 6 × 8 × 512 | 0 |
34 | Upsampling | 12 × 16 × 1024 | - | - | - | 12 × 16 × 1024 | 0 |
35 | De-Conv 1 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 4,719,104 |
36 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
37 | De-Conv 2 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 2,359,808 |
38 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
39 | De-Conv 3 | 12 × 16 × 512 | 3 × 3 | 512 | ReLU | 12 × 16 × 512 | 2,359,808 |
40 | Batch Normalization | 12 × 16 × 512 | - | - | - | - | 2048 |
41 | Upsampling | 24 × 32 × 512 | - | - | - | 24 × 32 × 512 | 0 |
42 | De-Conv 4 | 24 × 32 × 512 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 2,359,808 |
43 | Batch Normalization | 24 × 32 × 512 | - | - | - | - | 2048 |
44 | De-Conv 5 | 24 × 32 × 512 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 2,359,808 |
45 | Batch Normalization | 24 × 32 × 512 | - | - | - | - | 2048 |
46 | De-Conv 6 | 24 × 32 × 256 | 3 × 3 | 512 | ReLU | 24 × 32 × 512 | 1,179,904 |
47 | Batch Normalization | 24 × 32 × 256 | - | - | - | - | 1024 |
48 | Upsampling | 48 × 64 × 256 | - | - | - | 48 × 64 × 256 | 0 |
49 | De-Conv 7 | 48 × 64 × 256 | 3 × 3 | 512 | ReLU | 48 × 64 × 256 | 590,080 |
50 | Batch Normalization | 48 × 64 × 256 | - | - | - | - | 1024 |
51 | De-Conv 8 | 48 × 64 × 256 | 3 × 3 | 512 | ReLU | 48 × 64 × 256 | 590,080 |
52 | Batch Normalization | 48 × 64 × 256 | - | - | - | - | 1024 |
53 | De-Conv 9 | 48 × 64 × 128 | 3 × 3 | 512 | ReLU | 48 × 64 × 256 | 295,040 |
54 | Batch Normalization | 48 × 64 × 128 | - | - | - | - | 512 |
55 | Upsampling | 96 × 128 × 128 | - | - | - | 96 × 128 × 128 | 0 |
56 | De-Conv 10 | 96 × 128 × 128 | 3 × 3 | 512 | ReLU | 96 × 128 × 128 | 147,584 |
57 | Batch Normalization | 96 × 128 × 128 | - | - | - | - | 512 |
58 | De-Conv 11 | 96 × 128 × 64 | 3 × 3 | 512 | ReLU | 96 × 128 × 64 | 73,792 |
59 | Batch Normalization | 96 × 128 × 64 | - | - | - | - | 256 |
60 | Upsampling | 192 × 256 × 64 | - | - | - | 192 × 256 × 64 | 0 |
61 | De-Conv 12 | 192 × 256 × 64 | 3 × 3 | 512 | ReLU | 192 × 256 × 64 | 36,928 |
62 | Batch Normalization | 192 × 256 × 64 | - | - | - | - | 256 |
63 | De-Conv 13 | 192 × 256 × 1 | 3 × 3 | 512 | ReLU | 192 × 256 × 1 | 577 |
64 | Batch Normalization | 192 × 256 × 1 | - | - | - | - | 4 |
Total Parameters = 33,393,669 | |||||||
Trainable Parameters = 33,377,795 | |||||||
Non-Trainable Parameters = 15,874 |
Training Dataset | ||||||
---|---|---|---|---|---|---|
Optimizer | Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss |
SGD | 96.81 | 84.60 | 96.09 | 96.86 | 97.77 | 12.03 |
Adam | 96.42 | 88.32 | 92.15 | 98.50 | 96.88 | 11.31 |
Adadelta | 83.90 | 61.62 | 86.43 | 95.82 | 93.91 | 38.33 |
Testing Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
SGD | 93.98 | 80.26 | 90.60 | 91.64 | 94.55 | 17.91 |
Adam | 93.83 | 84.86 | 85.89 | 96.93 | 94.04 | 19.19 |
Adadelta | 82.41 | 59.12 | 81.08 | 90.82 | 90.55 | 41.54 |
Validation Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
SGD | 94.44 | 81.01 | 91.23 | 92.65 | 94.79 | 17.37 |
Adam | 94.74 | 86.13 | 88.30 | 97.14 | 95.01 | 16.24 |
Adadelta | 82.60 | 60.13 | 80.76 | 92.68 | 90.56 | 41.23 |
Training Dataset | ||||||
---|---|---|---|---|---|---|
Batch Size | Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss |
8 | 97.66 | 90.37 | 97.10 | 95.78 | 97.82 | 7.90 |
18 | 96.42 | 88.32 | 92.15 | 98.50 | 96.88 | 11.31 |
32 | 94.79 | 80.87 | 92.93 | 96.08 | 96.45 | 17.02 |
Testing Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
8 | 95.72 | 87.29 | 92.04 | 94.12 | 95.77 | 12.54 |
18 | 93.83 | 84.86 | 85.89 | 96.93 | 94.04 | 19.19 |
32 | 92.92 | 78.37 | 89.19 | 93.23 | 94.34 | 21.41 |
Validation Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
8 | 95.68 | 87.49 | 93.42 | 92.72 | 95.51 | 13.72 |
18 | 94.74 | 86.13 | 88.30 | 97.14 | 95.01 | 16.24 |
32 | 93.92 | 79.78 | 92.13 | 93.24 | 95.30 | 19.19 |
Training Dataset | ||||||
---|---|---|---|---|---|---|
Epochs | Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss |
25 | 88.69 | 73.72 | 81.72 | 93.69 | 91.58 | 27.71 |
50 | 93.51 | 79.81 | 98.74 | 81.03 | 93.62 | 18.99 |
75 | 97.66 | 90.79 | 95.95 | 96.89 | 97.79 | 7.79 |
100 | 59.97 | 53.07 | 37.62 | 96.75 | 47.37 | 164.86 |
Testing Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
25 | 89.72 | 72.95 | 80.05 | 94.58 | 91.64 | 27.60 |
50 | 93.10 | 78.97 | 96.55 | 81.10 | 93.35 | 19.44 |
75 | 95.57 | 87.41 | 90.62 | 95.23 | 95.47 | 13.78 |
100 | 57.38 | 50.65 | 35.46 | 96.86 | 43.25 | 181.64 |
Validation Dataset | ||||||
Jaccard Index (%) | Dice Coefficient (%) | Precision (%) | Recall (%) | Accuracy (%) | Loss | |
25 | 89.56 | 73.90 | 81.96 | 92.34 | 91.00 | 28.17 |
50 | 92.10 | 77.69 | 97.31 | 77.58 | 91.72 | 23.37 |
75 | 96.35 | 89.01 | 93.56 | 94.91 | 96.27 | 11.56 |
100 | 59.78 | 53.26 | 37.58 | 96.73 | 47.15 | 165.86 |
Ref | Technique Used | Dataset | Performance Parameters |
---|---|---|---|
Yuan et al. [10] | 19-layer Deep Convolution Network | ISBI-2016 | Jaccard Coefficient = 0.963 |
PH2 | |||
Yuan et al. [11] | Convolutional-Deconvolutional neural Network | ISBI-2017 | Jaccard Coefficient = 0.784 |
Hang Li et al. [28] | Dense Deconvolutional Network | ISBI-2016 | Jaccard Coefficient = 0.870 |
ISBI-2017 | Jaccard Coefficient = 0.765 | ||
Yu et al. [29] | Convolution Network | ISBI-2016 | Accuracy = 0.8654 |
ISBI-2017 | |||
Khan et al. [30] | Convolution Network | ISIC | Accuracy = 0.968 |
PH2 | Accuracy = 0.921 | ||
Proposed Model | Modified U-Net | PH2 | Jaccard Coefficient = 0.976 |
Architecture | Accuracy = 0.977 |
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Anand, V.; Gupta, S.; Koundal, D.; Nayak, S.R.; Barsocchi, P.; Bhoi, A.K. Modified U-NET Architecture for Segmentation of Skin Lesion. Sensors 2022, 22, 867. https://doi.org/10.3390/s22030867
Anand V, Gupta S, Koundal D, Nayak SR, Barsocchi P, Bhoi AK. Modified U-NET Architecture for Segmentation of Skin Lesion. Sensors. 2022; 22(3):867. https://doi.org/10.3390/s22030867
Chicago/Turabian StyleAnand, Vatsala, Sheifali Gupta, Deepika Koundal, Soumya Ranjan Nayak, Paolo Barsocchi, and Akash Kumar Bhoi. 2022. "Modified U-NET Architecture for Segmentation of Skin Lesion" Sensors 22, no. 3: 867. https://doi.org/10.3390/s22030867
APA StyleAnand, V., Gupta, S., Koundal, D., Nayak, S. R., Barsocchi, P., & Bhoi, A. K. (2022). Modified U-NET Architecture for Segmentation of Skin Lesion. Sensors, 22(3), 867. https://doi.org/10.3390/s22030867