Simultaneous Detection of SARS-CoV-2 and Influenza Virus in Wastewater of Two Cities in Southeastern Germany, January to May 2022
Abstract
:1. Introduction
2. Materials and Methods
3. Results
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Corpuz, M.V.A.; Buonerba, A.; Vigliotta, G.; Zarra, T.; Ballesteros, F., Jr.; Campiglia, P.; Belgiorno, V.; Korshin, G.; Naddeo, V. Viruses in wastewater: Occurrence, abundance and detection methods. Sci. Total Environ. 2020, 745, 140910. [Google Scholar] [CrossRef] [PubMed]
- Ali, W.; Zhang, H.; Wang, Z.; Chang, C.; Javed, A.; Ali, K.; Du, W.; Niazi, N.K.; Mao, K.; Yang, Z. Occurrence of various viruses and recent evidence of SARS-CoV-2 in wastewater systems. J. Hazard. Mater. 2021, 414, 125439. [Google Scholar] [CrossRef] [PubMed]
- Shah, S.; Gwee, S.X.W.; Ng, J.Q.X.; Lau, N.; Koh, J.; Pang, J. Wastewater surveillance to infer COVID-19 transmission: A systematic review. Sci. Total Environ. 2022, 804, 150060. [Google Scholar] [CrossRef] [PubMed]
- Parasa, S.; Desai, M.; Thoguluva Chandrasekar, V.; Patel, H.K.; Kennedy, K.F.; Roesch, T.; Spadaccini, M.; Colombo, M.; Gabbiadini, R.; Artifon, E.L.A.; et al. Prevalence of gastrointestinal symptoms and fecal viral shedding in patients with coronavirus disease 2019: A systematic review and meta-analysis. JAMA Netw. Open 2020, 3, e2011335. [Google Scholar] [CrossRef]
- Lavania, M.; Joshi, M.S.; Ranshing, S.S.; Potdar, V.A.; Shinde, M.; Chavan, N.; Jadhav, S.M.; Sarkale, P.; Mohandas, S.; Sawant, P.M.; et al. Prolonged shedding of SARS-CoV-2 in feces of COVID-19 positive patients: Trends in genomic variation in first and second wave. Front. Med. 2022, 9, 835168. [Google Scholar] [CrossRef]
- Natarajan, A.; Zlitni, S.; Brooks, E.F.; Vance, S.E.; Dahlen, A.; Hedlin, H.; Park, R.M.; Han, A.; Schmidtke, D.T.; Verma, R.; et al. Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection. Med 2022, 3, 371–387. [Google Scholar] [CrossRef]
- Prasek, S.M.; Pepper, I.L.; Innes, G.K.; Slinski, S.; Ruedas, M.; Sanchez, A.; Brierley, P.; Betancourt, W.Q.; Stark, E.R.; Foster, A.R.; et al. Population level SARS-CoV-2 fecal shedding rates determined via wastewater-based epidemiology. Sci. Total Environ. 2022, 838, 156535. [Google Scholar] [CrossRef]
- Punpanich, W.; Chotpitayasunondh, T. A review on the clinical spectrum and natural history of human influenza. Int. J. Infect. Dis. 2012, 16, e714–e723. [Google Scholar] [CrossRef] [Green Version]
- Yoo, S.J.; Moon, S.J.; Kuak, E.Y.; Yoo, H.M.; Kim, C.K.; Chey, M.J.; Shin, B.M. Frequent detection of pandemic (H1N1) 2009 virus in stools of hospitalized patients. J. Clin. Microbiol. 2010, 48, 2314–2315. [Google Scholar] [CrossRef] [Green Version]
- Chan, M.C.; Lee, N.; Chan, P.K.; To, K.F.; Wong, R.Y.; Ho, W.S.; Ngai, K.L.; Sung, J.J. Seasonal influenza A virus in feces of hospitalized adults. Emerg. Infect. Dis. 2011, 17, 2038–2042. [Google Scholar] [CrossRef]
- Horm, S.V.; Gutierrez, R.A.; Sorn, S.; Buchy, P. Environment: A potential source of animal and human infection with influenza A (H5N1) virus. Influenza Other Respir. Viruses 2012, 6, 442–448. [Google Scholar] [CrossRef] [Green Version]
- Yuan, J.; Lau, E.H.; Li, K.; Leung, Y.H.; Yang, Z.; Xie, C.; Liu, Y.; Liu, Y.; Ma, X.; Liu, J.; et al. Effect of live poultry market closure on avian influenza A(H7N9) virus activity in Guangzhou, China, 2014. Emerg. Infect. Dis. 2015, 21, 1784–1793. [Google Scholar] [CrossRef] [Green Version]
- Schmitz, A.; Pertusa, M.; Le Bouquin, S.; Rousset, N.; Ogor, K.; LeBras, M.O.; Martenot, C.; Daniel, P.; Belen Cepeda Hontecillas, A.; Scoizec, A.; et al. Natural and experimental persistence of highly pathogenic H5 influenza viruses in slurry of domestic ducks, with or without lime treatment. Appl. Environ. Microbiol. 2020, 86, e02288-20. [Google Scholar] [CrossRef]
- Guo, J.; Song, W.; Ni, X.; Liu, W.; Wu, J.; Xia, W.; Zhou, X.; Wang, W.; He, F.; Wang, X.; et al. Pathogen change of avian influenza virus in the live poultry market before and after vaccination of poultry in southern China. Virol. J. 2021, 18, 213. [Google Scholar] [CrossRef]
- Heijnen, L.; Medema, G. Surveillance of influenza A and the pandemic influenza A (H1N1) 2009 in sewage and surface water in the Netherlands. J. Water Health 2011, 9, 434–442. [Google Scholar] [CrossRef] [Green Version]
- Stobnicka-Kupiec, A.; Golofit-Szymczak, M.; Cyprowski, M.; Gorny, R.L. Detection and identification of potentially infectious gastrointestinal and respiratory viruses at workplaces of wastewater treatment plants with viability qPCR/RT-qPCR. Sci. Rep. 2022, 12, 4517. [Google Scholar] [CrossRef]
- Achangwa, C.; Park, H.; Ryu, S.; Lee, M.S. Collateral impact of public health and social measures on respiratory virus activity during the COVID-19 pandemic 2020-2021. Viruses 2022, 14, 1071. [Google Scholar] [CrossRef]
- Tang, H.J.; Lai, C.C.; Chao, C.M. Changing epidemiology of respiratory tract infection during COVID-19 pandemic. Antibiotics 2022, 11, 315. [Google Scholar] [CrossRef]
- Dähne, T.; Bauer, W.; Essig, A.; Schaaf, B.; Spinner, C.D.; Pletz, M.W.; Rohde, G.; Rupp, J.; Witzenrath, M.; Panning, M. The impact of the SARS-CoV-2 pandemic on the prevalence of respiratory tract pathogens in patients with community-acquired pneumonia in Germany. Emerg. Microbes Infect. 2021, 10, 1515–1518. [Google Scholar] [CrossRef]
- Heinzinger, S.; Eberle, U.; Angermeier, H.; Flechsler, J.; Konrad, R.; Dangel, A.; Berger, C.; Sprenger, A.; Hepner, S.; Biere, B.; et al. Reciprocal circulation pattern of SARS-CoV-2 and influenza viruses during the influenza seasons 2019/2020 and 2020/2021 in the Bavarian Influenza Sentinel (Germany). Epidemiol. Infect. 2021, 149, e226. [Google Scholar] [CrossRef]
- Engels, G.; Sack, J.; Weissbrich, B.; Hartmann, K.; Knies, K.; Härtel, C.; Streng, A.; Dölken, L.; Liese, J.G.; CoPraKid study group. Very low incidence of SARS-CoV-2, influenza and RSV but high incidence of rhino-, adeno- and endemic coronaviruses in children with acute respiratory infection in primary care pediatric practices during the second and third wave of the SARS-CoV-2 pandemic. Pediatr. Infect. Dis. J. 2022, 41, e146–e148. [Google Scholar] [CrossRef]
- Dumke, R.; de la Cruz Barron, M.; Oertel, R.; Helm, B.; Kallies, R.; Berendonk, T.U.; Dalpke, A. Evaluation of two methods to concentrate SARS-CoV-2 from untreated wastewater. Pathogens 2021, 10, 195. [Google Scholar] [CrossRef]
- World Health Organization: WHO Information for the Molecular Detection of Influenza viruses. February 2021. Available online: https://cdn.who.int/media/docs/default-source/influenza/molecular-detention-of-influenza-viruses/protocols_influenza_virus_detection_feb_2021.pdf?sfvrsn=df7d268a_5 (accessed on 23 May 2022).
- Stachler, E.; Kelty, C.; Sivaganesan, M.; Li, X.; Bibby, K.; Shanks, O.C. Quantitative crAssphage PCR assays for human fecal pollution measurement. Environ. Sci. Technol. 2017, 51, 9146–9154. [Google Scholar] [CrossRef]
- Robotto, A.; Lembo, D.; Quaglino, P.; Brizio, E.; Polato, D.; Civra, A.; Cusato, J.; Di Perri, G. Wastewater-based SARS-CoV-2 environmental monitoring for Piedmont, Italy. Environ. Res. 2022, 203, 111901. [Google Scholar] [CrossRef]
- Alhama, J.; Maestre, J.P.; Martin, M.A.; Michan, C. Monitoring COVID-19 through SARS-CoV-2 quantification in wastewater: Progress, challenges and prospects. Microb. Biotechnol. 2022, 15, 1719–1728. [Google Scholar] [CrossRef]
- Tafalla, M.; Buijssen, M.; Geets, R.; Vonk Noordegraaf-Schouten, M. A comprehensive review of the epidemiology and disease burden of Influenza B in 9 European countries. Hum. Vaccin. Immunother. 2016, 12, 993–1002. [Google Scholar] [CrossRef] [Green Version]
- Koutsakos, M.; Wheatley, A.K.; Laurie, K.; Kent, S.J.; Rockman, S. Influenza lineage extinction during the COVID-19 pandemic? Nat. Rev. Microbiol. 2021, 19, 741–742. [Google Scholar] [CrossRef]
- Chan, P.K.; Chan, M.C.; Cheung, J.L.; Lee, N.; Leung, T.F.; Yeung, A.C.; Wong, M.C.; Ngai, K.L.; Nelson, E.A.; Hui, D.S. Influenza B lineage circulation and hospitalization rates in a subtropical city, Hong Kong, 2000–2010. Clin. Infect. Dis. 2013, 56, 677–684. [Google Scholar] [CrossRef] [Green Version]
- Belazi, S.; Olsen, S.J.; Brown, C.; Green, H.K.; Mook, P.; Nguyen-Van-Tam, J.; Penttinen, P.; Lansbury, L. Spotlight influenza: Laboratory-confirmed seasonal influenza in people with acute respiratory illness: A literature review and meta-analysis, WHO European Region, 2004 to 2017. Euro Surveill. 2021, 26, 2000343. [Google Scholar] [CrossRef]
- Sabar, M.A.; Honda, R.; Haramoto, E. CrAssphage as an indicator of human-fecal contamination in water environment and virus reduction in wastewater treatment. Water Res. 2022, 221, 118827. [Google Scholar] [CrossRef]
- Wilder, M.L.; Middleton, F.; Larsen, D.A.; Du, Q.; Fenty, A.; Zeng, T.; Insaf, T.; Kilaru, P.; Collins, M.; Kmush, B.; et al. Co-quantification of crAssphage increases confidence in wastewater-based epidemiology for SARS-CoV-2 in low prevalence areas. Water Res. X 2021, 11, 100100. [Google Scholar] [CrossRef] [PubMed]
- Shi, J.; Li, X.; Zhang, S.; Sharma, E.; Sivakumar, M.; Sherchan, S.P.; Jiang, G. Enhanced decay of coronaviruses in sewers with domestic wastewater. Sci. Total Environ. 2022, 813, 151919. [Google Scholar] [CrossRef] [PubMed]
- Silverman, A.I.; Boehm, A.B. Systematic review and meta-analysis of the persistence of enveloped viruses in environmental waters and wastewater in the absence of disinfectants. Environ. Sci. Technol. 2021, 55, 14480–14493. [Google Scholar] [CrossRef] [PubMed]
- Ghebrehewet, S.; MacPherson, P.; Ho, A. Influenza. BMJ 2016, 355, i6258. [Google Scholar] [CrossRef] [Green Version]
- Leung, N.H.; Xu, C.; Ip, D.K.; Cowling, B.J. The fraction of influenza virus infections that are asymptomatic: A systematic review and meta-analysis. Epidemiology 2015, 26, 862–872. [Google Scholar] [CrossRef]
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Dumke, R.; Geissler, M.; Skupin, A.; Helm, B.; Mayer, R.; Schubert, S.; Oertel, R.; Renner, B.; Dalpke, A.H. Simultaneous Detection of SARS-CoV-2 and Influenza Virus in Wastewater of Two Cities in Southeastern Germany, January to May 2022. Int. J. Environ. Res. Public Health 2022, 19, 13374. https://doi.org/10.3390/ijerph192013374
Dumke R, Geissler M, Skupin A, Helm B, Mayer R, Schubert S, Oertel R, Renner B, Dalpke AH. Simultaneous Detection of SARS-CoV-2 and Influenza Virus in Wastewater of Two Cities in Southeastern Germany, January to May 2022. International Journal of Environmental Research and Public Health. 2022; 19(20):13374. https://doi.org/10.3390/ijerph192013374
Chicago/Turabian StyleDumke, Roger, Michael Geissler, Annett Skupin, Björn Helm, Robin Mayer, Sara Schubert, Reinhard Oertel, Bertold Renner, and Alexander H. Dalpke. 2022. "Simultaneous Detection of SARS-CoV-2 and Influenza Virus in Wastewater of Two Cities in Southeastern Germany, January to May 2022" International Journal of Environmental Research and Public Health 19, no. 20: 13374. https://doi.org/10.3390/ijerph192013374
APA StyleDumke, R., Geissler, M., Skupin, A., Helm, B., Mayer, R., Schubert, S., Oertel, R., Renner, B., & Dalpke, A. H. (2022). Simultaneous Detection of SARS-CoV-2 and Influenza Virus in Wastewater of Two Cities in Southeastern Germany, January to May 2022. International Journal of Environmental Research and Public Health, 19(20), 13374. https://doi.org/10.3390/ijerph192013374