Detection of Coronaviruses in Bats of Various Species in Italy
Abstract
:1. Introduction
2. Results and Discussion
Host | Carcasses | Faeces | ||
---|---|---|---|---|
N | % | N | % | |
Kuhl’s pipistrelle (Pipistrellus kuhlii) | 68 | 54 | 28 | 40.7 |
Pipistrelle bat (Pipistrellus spp.) | 48 | 38 | 30 | 43.5 |
European free-tailed bat (Tadarida teniotis) | 2 | 1.6 | 1 | 1.4 |
Common noctule (Nyctalus noctula) | 2 | 1.6 | 1 | 1.4 |
Savi’s pipistrelle (Hypsugo savii) | 1 | 0.8 | 2 | 2.9 |
Common long-eared bat (Plecotus auritus) | 3 | 2.4 | 0 | - |
Parti-colored bat (Vespertilio murinus) | 2 | 1.6 | 1 | 1.4 |
Lesser horseshoe bat (Rhinolophus hipposideros) | 0 | - | 6 | 8.7 |
Total samples | 126 | 100 | 69 | 100 |
N ° ID | Host species | Sample type | Sex | Age | CoV strain | Group | GenBank accession number | Nucleotide similarity (%) |
---|---|---|---|---|---|---|---|---|
206679-3/2010 | Kuhl’s pipistrelle | Faeces | F | Adult | Bat-CoV/Pipistrellus khulii/Italy/206679-3/2010 | α | KF500949 | 97% Alphacoronavirus P.kuh/Iprima/Spain/2007 |
206679-5/2010 | Common noctule | Faeces | F | Adult | Bat-CoV/Nyctalus noctula/Italy/206679-5/2010 | β 2c | KF500941 | 96% Betacoronavirus E.isa/M/Spain/2007 |
206645-3/2011 | Kuhl’s pipistrelle | Carcass * | M | Juvenile | Bat-CoV/Pipistrellus khulii/Italy/206645-3/2011 | β 2c | KF500942 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-27/2011 | Kuhl’s pipistrelle | Carcass * | F | Adult | Bat-CoV/Pipistrellus khulii/Italy/206645-27/2011 | β 2c | KF500943 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-29/2011 | Kuhl’s pipistrelle | Carcass * | F | Adult | Bat-CoV/Pipistrellus khulii/Italy/206645-29/2011 | β 2c | KF500944 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-40/2011 | Hypsugo savii | Carcass * | F | Adult | Bat-CoV/Hypsugo savii/206645-40/2011 | β 2c | KF500940 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-41/2010 | Kuhl’s pipistrelle | Carcass * | M | Juvenile | Bat-CoV/Pipistrellus khulii/Italy/206645-41/2010 | α | KF500945 | 86% Alphacoronavirus N.las/C/Spain/2007 |
206645-53/2011 | Kuhl’s pipistrelle | Carcass * | nd | nd | Bat-CoV/Pipistrellus khulii/Italy/206645-53/2011 | β 2c | KF500946 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-54/2011 | Kuhl’s pipistrelle | Carcass ^ | nd | nd | Bat-CoV/Pipistrellus khulii/Italy/206645-54/2011 | β 2c | KF500947 | 94% Betacoronavirus H.sav/J/Spain/2007 |
206645-63/2011 | Kuhl’s pipistrelle | Carcass * | nd | nd | Bat-CoV/Pipistrellus khulii/Italy/206645-63/2011 | β 2c | KF500948 | 94% Betacoronavirus H.sav/J/Spain/2007 |
143488/2011 | Pipistrelle bat | Faeces | nd | nd | Bat-CoV/Rhinolophus hipposideros/Italy/143488/2011 | β 2b ˜ | NA | |
49967-19/2010 | Pipistrelle bat | Carcass ° | nd | Juvenile | Bat-CoV/Pipistrellus spp/Italy/49967-19/2010 | β 2c | KF500951 | 94% Betacoronavirus H.sav/J/Spain/2007 |
187632-2/2012 | Lesser horseshoe bat | Faeces | F | nd | Bat-CoV/Rhinolophus hipposideros/Italy/187632-2/2012 | β 2b | KF500952 | 97% Bat coronavirus SLO1A0082/2008/SVN |
243585/2012 | Lesser horseshoe bat | Faeces | F | nd | Bat-CoV/Rhinolophus hipposideros/Italy/243585/2012 | β 2b | KF500953 | 97% Bat coronavirus SLO1A0082/2008/SVN |
196814/2011 | Lesser horseshoe bat | Faeces | nd | nd | Bat-CoV/Rhinolophus hipposideros/Italy/196814/2011 | β 2b | KF500954 | 97% Bat coronavirus SLO1A0082/2008/SVN |
330375-15/2012 | Kuhl’s pipistrelle | Faeces | M | Adult | Bat-CoV/Pipistrellus khulii/Italy/330375-15/2012 | β 2c | KF500950 | 94% Betacoronavirus H.sav/J/Spain/2007 |
3. Experimental
3.1. Sampling
3.2. Genome Detection and Sequencing
3.3. Virus Isolation
4. Conclusions
Acknowledgments
Conflicts of Interest
References
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Lelli, D.; Papetti, A.; Sabelli, C.; Rosti, E.; Moreno, A.; Boniotti, M.B. Detection of Coronaviruses in Bats of Various Species in Italy. Viruses 2013, 5, 2679-2689. https://doi.org/10.3390/v5112679
Lelli D, Papetti A, Sabelli C, Rosti E, Moreno A, Boniotti MB. Detection of Coronaviruses in Bats of Various Species in Italy. Viruses. 2013; 5(11):2679-2689. https://doi.org/10.3390/v5112679
Chicago/Turabian StyleLelli, Davide, Alice Papetti, Cristiano Sabelli, Enrica Rosti, Ana Moreno, and Maria B. Boniotti. 2013. "Detection of Coronaviruses in Bats of Various Species in Italy" Viruses 5, no. 11: 2679-2689. https://doi.org/10.3390/v5112679
APA StyleLelli, D., Papetti, A., Sabelli, C., Rosti, E., Moreno, A., & Boniotti, M. B. (2013). Detection of Coronaviruses in Bats of Various Species in Italy. Viruses, 5(11), 2679-2689. https://doi.org/10.3390/v5112679