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Article

Multiple Images Improve Lake CDOM Estimation: Building Better Landsat 8 Empirical Algorithms across Southern Canada

by
Talia Koll-Egyed
1,
Jeffrey A. Cardille
2,* and
Eliza Deutsch
3
1
Department of Natural Resource Sciences, McGill University, Macdonald-Stewart Building, Montreal, QC H9X 3V9, Canada
2
Department of Natural Resources Sciences and Bieler School of Environment, McGill University, Macdonald-Stewart Building, Montreal, QC H9X 3V9, Canada
3
Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, ON M5S 3B2, Canada
*
Author to whom correspondence should be addressed.
Remote Sens. 2021, 13(18), 3615; https://doi.org/10.3390/rs13183615
Submission received: 21 June 2021 / Revised: 24 August 2021 / Accepted: 4 September 2021 / Published: 10 September 2021
(This article belongs to the Special Issue Remote Sensing of Lake Properties and Dynamics)

Abstract

:
Coloured dissolved organic matter (CDOM) is an important water property for lake management. Remote sensing using empirical algorithms has been used to estimate CDOM, with previous studies relying on coordinated field campaigns that coincided with satellite overpass. However, this requirement reduces the maximum possible sample size for model calibration. New satellites and advances in cloud computing platforms offer opportunities to revisit assumptions about methods used for empirical algorithm calibration. Here, we explore the opportunities and limits of using median values of Landsat 8 satellite images across southern Canada to estimate CDOM. We compare models created using an expansive view of satellite image availability with those emphasizing a tight timing between the date of field sampling and the date of satellite overpass. Models trained on median band values from across multiple summer seasons performed better (adjusted R2 = 0.70, N = 233) than models for which imagery was constrained to a 30-day time window (adjusted R2 = 0.45). Model fit improved rapidly when incorporating more images, producing a model at a national scale that performed comparably to others found in more limited spatial extents. This research indicated that dense satellite imagery holds new promise for understanding relationships between in situ CDOM and satellite reflectance data across large areas.

1. Introduction

Coloured dissolved organic matter (CDOM) is the optically measurable part of dissolved organic matter in water. It is optically characterized by its spectral absorption coefficient, aCDOM, at a reference wavelength (e.g., 440 nm). It is now understood to be a water property that partially controls the composition and functioning of freshwater ecosystems and regulates their responses to environmental change [1,2,3]. For example, CDOM’s effects on aquatic ecology include impacts on: (1) light and thermal regimes that can influence primary productivity and aquatic species habitat [4,5,6,7,8,9,10], (2) the pH and alkalinity of water bodies among other chemical and photochemical processes [11,12], (3) the bioavailability and toxicity of contaminants in water by forming chemical complexes with metals [13,14], and (4) water quality for human use and consumption due to the high cost of purifying water with high CDOM concentrations [5,15,16]. Understanding CDOM levels is therefore important for the monitoring and management of freshwater resources.
There is limited in situ CDOM data collected relative to its importance, even though CDOM is easily measured in the laboratory. In Canada, for example, there is no CDOM data collected by publicly available water-quality programs. In comparison, other optically active water-quality variables are more often routinely sampled, even though CDOM has strong effects on them. This includes water properties such as chlorophyll-a, which is often used as a proxy for phytoplankton concentration; total suspended solids; and Secchi disk depth, which measures water clarity. This trend of having less available CDOM data is not limited to Canada, as has been highlighted in several broad-scale assessments of regional lake monitoring efforts in the United States [17,18,19].
As such, satellite remote sensing can contribute critical information on inland waters for which in situ CDOM data is lacking and would be impractical or impossible to obtain. Remote sensing is an important complement to traditional monitoring methods, largely because of the widespread coverage and temporal consistency of satellite data. Furthermore, in Canada, a country with nearly 1 million lakes larger than 10 ha [20], satellite remote sensing provides the only viable means for monitoring this very widely distributed resource.
For most of the satellite record, remote sensing of lakes has been constrained by infrequent imagery, limited sensor responsiveness, and spatial resolution too coarse for the many small lakes of the world. For instance, the sensors of the Moderate Resolution Imaging Spectroradiometer (MODIS), Sentinel-3, and Sea-Viewing Wide Field-of-View Sensor (SeaWiFS) are effective for retrieval of CDOM [21]; however, their coarse spatial resolution (250–1000 m) limits them to larger lakes [22,23]. Prior to the launch of Landsat 8, imagery was typically limited, at least over North American lakes, by Landsat 5 and 7’s 14-day revisit rate, as well as high imagery costs [24]. Free access to new, higher-precision medium-resolution sensors, like Landsat 8, has changed this situation significantly. For Landsat 8, the spatial resolution (30 m), increased radiometric precision (12-bit), and availability of atmospherically corrected surface reflectance products [25] have expanded abilities to measure optical water-quality characteristics such as CDOM [17,26,27,28,29,30]. Empirical studies that estimate water parameters based on satellite band information have shown that the Landsat sensors can provide data for lakes as small as 4 hectares [17,23,26,28,29,31,32,33,34,35,36,37,38,39,40,41,42].
The majority of remote-sensing studies in aquatic environments have carefully coordinated field campaigns that coincided with satellite overpass [43]. One reason for this decision is that it ensures that lake conditions, which can change rapidly in some lakes [17,26], differ as little as possible between the date of field sampling and the image under inspection. Notably, early algorithms were developed during the era with few images, lower computing power, and expensive access to imagery; now that imagery is frequent, free, and easier to analyze, so it is worth exploring whether more data can form better models for lakes, as elsewhere [44,45,46].
Several studies have suggested that larger amounts of imagery can, at least in some circumstances, create better models to predict water-quality properties [33,35]. Working with the Landsat 8 OLI prototype ALI, Cardille et al. [33] indicated that the number of lakes under study could be increased using non-contemporaneous imagery, with little to no penalty in model quality compared to models with imagery limited to narrow time windows. The result was, however, limited to 53 lakes in two regions of Quebec, raising the question of whether the benefit of additional imagery was a fortuitous outcome over a small area, or a more general property that might be exploited. A recent study [35] using a large water-clarity dataset (n = 2548) from across southern Canada found that Secchi disk depth (SDD) estimates were significantly strengthened when a median filter was applied to Landsat 8 imagery. By using increasing time windows between satellite overpass and in situ sampling, the median filters applied produced better models by reducing the unwanted noise found in a single image.
Here, we studied the use of relatively large amounts of imagery for estimating CDOM across southern Canada, focusing on the role that larger numbers of images taken from larger time windows might play in either improving or inhibiting model quality. We (1) assessed whether models can be improved by widening the time window between the date of in situ sampling and the date of satellite overpass, and (2) estimated how many images were needed to optimally improve model fit. To do so, we used satellite data from the Landsat 8 OLI sensor and in situ data gathered by the Natural Sciences and Engineering Research Council of Canada (NSERC) Canadian Lake Pulse Network [47]. We used random forest models to identify meaningful bands and band ratios to use for empirical model development. We then explored the impact of median filtering, comparing models made with images within a short time window of field sampling (30 days) to a series of broader temporal spans. Next, we estimated the optimal number of images used in median filtering to generate the best model fit. Finally, we assessed how the model performed in a separate set of lakes for which there was no clear imagery available within 30 days. The results will be relevant to remote-sensing specialists who want to better understand the key sources of variation in fit between sampled CDOM and future imagery, and for limnologists planning field-sampling strategies that will best use data from Landsat 8.

2. Materials and Methods

2.1. Study Site

Canada is a lake-rich country with a vast number of lakes distributed around its territory: it is estimated that there are over 900,000 lakes greater than 10 hectares that account for approximately 7% of the surface area of the country [20]. These lakes are distributed throughout the landscape, but not uniformly. Lake formation is influenced by geology and availability of water, and as such there is a higher density of lakes in northern and eastern Canada [20,48]. Many lakes, especially those located in northern Canada, are largely inaccessible and have never been sampled. As such, this study focused on lakes sampled in the southern portion of the country where in situ samples were available for calibration.

2.2. In Situ Data Collection

The data for this study was collected by the NSERC Canadian Lake Pulse Network, a research partnership between academia and government designed to provide Canada’s first national-scale assessment of lake health [47]. Sampled lakes were selected in a semi-random sampling design with ecozone, human impact index, and lake size as stratifying factors. Sampling occurred during the period of maximum summer lake stratification (late June to mid-September) to eliminate seasonal effects. During these sampling campaigns, the Lake Pulse teams measured approximately 100 water-quality parameters, including CDOM absorption spectra from 664 lakes. Although Lake Pulse field crews sampled lakes across all 10 Canadian provinces and 2 territories (Northwest Territories and Yukon), we only used data that coincided with the ecozones in the southern half of Canada (n = 592). This was firstly because few samples were taken in the far north of Canada, and secondly because surface reflectance imagery for Landsat 8 data is only reliable at latitudes below 65° [49].
Sampling procedures for field and laboratory analyses followed standard limnological practices [50]. For CDOM, a single sample per lake was collected from the epilimnion. Water for CDOM analysis was filtered through a 0.45 μm filter and stored in the dark at 4 °C in 60 mL Amber Boston Round Glass Bottles until the time of processing in the lab. Before lab analysis, samples were refiltered with 0.2 μm filters. CDOM was determined from absorbance measurements at 440 nm (a440) using a Perkins-Elmer lambda 650 spectrophotometer using the dual-beam mode through 5 or 10 cm quartz cuvettes against a sample of deionised water. Absorbance was converted to Napierian absorption coefficients [51] using:
a440 = 2.303 * Absa440/l,
where a440 is the absorption coefficient, 2.303 is the natural logarithm of 10, Absa440 is absorbance, and l is the cell path length of the cuvette (m). Additionally, the aCDOM spectrums were corrected for temperature differences between the deionized water and lake samples [52]. CDOM values are reported as a440 (m−1).

2.3. Image Collection and Processing

We used Google Earth Engine (GEE) [53] to obtain Landsat 8 Tier 1 Surface Reflectance images from the U.S. Geological Survey (USGS) [49]. These images have been atmospherically corrected using the Land Surface Reflectance Code (LaSRC) [25]. The LaSRC algorithm is optimized for land rather than aquatic systems, but the product is nonetheless successfully used for lake-monitoring applications for the estimation of CDOM [17,54,55].
We extracted mean surface reflectance values from a 50 m buffer around each sample location using images with cloud cover ≤30%. Specifically, we extracted data in bands B1–B5 (ultra-blue, blue, green, red, near-infrared). We filtered the image data for each of the extracted buffer zones using the bit quality assessment (BQA) band [56,57] in order to remove cloud and cloud shadow. The image data for each of the extracted buffer zones were also filtered so that only images with a BQA band value of 324, signaling cloud-free water, were included. The remaining data were then filtered to remove any null values that occurred due to cloud and cloud shadow masking.
Of the lakes sampled for CDOM between 2017 and 2019 by the NSERC Canadian Lake Pulse Network, we identified those that were at least 10 ha large with observations 20 m or greater from shore (when including the 50 m buffer). For 329 of the lakes, we identified clear summer imagery within 30 days of the sample date (between 20 June–20 September). Of the 329 lakes, we randomly identified 233 of these lake samples for model calibration, leaving 96 for model validation (Figure 1). Calibration and validation lakes were distributed throughout the southern half of Canada and had a similar range of CDOM(a440). For the calibration dataset, CDOM(a440) values ranged between 0.05 and 11.5 m−1, whereas for the validation dataset, values ranged between 0.06 and 10.5 m−1. An additional 128 lakes were sampled by Pulse that did not have imagery within 30 days of the sample date. They were retained for subsequent use as an illustration of how this approach can be extended to larger numbers of lakes than in other approaches using narrow time windows. These lakes had estimated average lake depths that ranged from 1–143 m and estimated size that ranged from 0.1–964 km2 [20].

2.4. Coloured Dissolved Organic Matter Modelling

2.4.1. Predictor Selection

We began by testing multiple time windows using a unique image. We tested time windows of ±1, ±3, ±7, and ±30 days. For these narrower time windows, there were very few sample points available for algorithm development and testing (17, 50, and 101 lakes, respectively), which would not be applicable to a continental scale approach. Of the 592 NSERC Canadian Lake Pulse Network lakes, 329 (233 calibration, 96 validation) were sampled within a 30-day window of a clear image. We used these lakes as the basis to explore the effect of incorporating more imagery into the analysis, while leaving other factors fixed.
We used the random forest technique to select relevant variables using image data from ± 30 days of the in situ collection date (Thirty-day Window Nearest). We created random forests of potential explanatory band combinations using the VSURF package in R [58,59] and assessed the most significant combinations. We used the calibration dataset of measured CDOM(a440) values as the dependent variable, and the surface reflectance values for Landsat 8 OLI bands B1–B5 and band ratio permutations from the Same Month Single Image temporal window as the independent variables (26 terms total). We used variables identified by the “prediction step” [58] and identified the pair of terms that produced the highest adjusted R2 and lowest root mean squared error (RMSE) to develop the models. To ensure that there were no spatial boundaries that needed to be considered for the algorithm calibration process, we mapped and graphed residuals to identify any spatial clustering of extreme residual values.

2.4.2. Time Windows

For each lake in the calibration and validation datasets, there was a substantial number of images in the Google Earth Engine catalog that could potentially improve the explanatory power of imagery for estimating CDOM in Canadian lakes. For each lake in the calibration and validation datasets, we identified images that fit the following time constraints:
  • Thirty-day Window Nearest: image reflectance for a single satellite image taken nearest in time within ±30 days of the in situ collection date, following Brezonik et al. [26], Olmanson et al. [17], and others (124 images, 1 observation per lake).
  • Thirty-day Window Median: median image reflectance within ±30 days of the in situ sample date for each sample station (242 images, average 2.2 images per lake).
  • Same Summer Median: median image reflectance within the same summer (20 June–20 September); the in situ sample was taken for each sample station (305 images, average 3.2 images per lake).
  • All Summers Median: median image reflectance of all available summer images (20 June–20 September) throughout the Landsat record (2013–2019) for each sample station (2290 images, average 23.8 images per lake).
For both the calibration and validation datasets, we compared the model fit for the various time windows using model adjusted R2, RMSE, which is the square root of the mean of squares of all errors [60]; mean absolute error (MAE), which is the mean of the absolute values of the individual prediction errors [61]; and statistical bias [62], which computes the average amount of error using the metrics package [62] in the R software [63].
MAE = i = 1 n | CDOM ( a 440 ) , s e n s o r CDOM ( a 440 ) ,   i n   s i t u | n
where CDOM(a440), sensor is using Landsat 8 SR data. MAE= 0 equals a perfect fit.
RMSE = i = 1 n   ( CDOM ( a 440 ) , s e n s o r CDOM ( a 440 ) ,   i n   s i t u ) 2 n
where CDOM(a440), sensor is using Landsat 8 SR data. RMSE= 0 equals a perfect fit.

2.4.3. Effects of Adding Imagery

To understand the potential effect of increasing the amount of imagery considered when creating a regression relationship, we identified 118 (of 233) lakes from the calibration dataset that had 20 or more clear summer images over the 2013 to 2019 period. We iteratively selected images from this 20-image pool, without regard for the proximity of the images to the sample collection date and used them to create regressions using the same variables (B3/B4, B2) as those used for the “Thirty-day Window Nearest” progression. We then determined the asymptote of the distribution by using the Stats package [63] to implement the nls() function.

2.4.4. Extra Lakes Considered when the Time Window Was Expanded

We included lakes that would not have been considered in studies limited to only a single tight timeframe for image selection. These were 128 lakes for which there were no clear image matches within 30 days of in situ sampling and satellite overpass; CDOM(a440) values ranged between 0.03 and 10.25 m−1 (Figure 1). We assessed model performance for two time windows: (1) Same Summer Median, and (2) All Summers Median.

2.4.5. Overall Workflow

The overall workflow of the methods section can be seen in Figure 2. Landsat 8 surface reflectance imagery was accessed in GEE, and band values for B1–B5 were extracted. These band values for a single clear image within a 30-day window were used in conjunction with the in situ CDOM(a440) samples for the random forest using VSURF for band selection. At this stage we examined how using various time windows using a median filter impacted the results. We then explored the potential effect of increasing the amount of imagery using the median filter. Finally, we looked at an extra set of lakes in order to see how the model performed in lakes that had neither been used for model calibration or validation.

3. Results

3.1. CDOM Model Results

Based on the results of the random forest using VSURF, we identified the best two-termed model as:
ln(CDOM(a440)) = a − b(ln(B3/B4)) − c(ln(B2)
where ln(CDOM(a440)) is the natural logarithm of the CDOM absorbance coefficient measured at 440 nm for a given sample location; coefficients a, b, and c were fit to the calibration data by regression analysis; and B3, B4, and B2 represent Landsat 8’s green, red, and blue bands, respectively. The first term (B3/B4) explained most of the variance observed, and was improved slightly by including the second term (B2) (Figure S1). Random Forest runs on data with other time windows produced similar variable choices.

3.2. Using More Than One Image for Model Development

Given the results of our assessment of spatial variability in regression coefficients, we created a global regression model with the “Thirty-day Window Nearest” time window (ln(CDOM(a440)) = 3.65 − 2.91 * ln(B3/B4) − 0.41 * ln(B2), p-value < 2.2 * 10−16, adjusted R2 = 0.47). Models built from very narrow time windows, which included only lakes with satellite overpass within one, three, or seven days, covered dramatically fewer lakes and offered no improvement in accuracy metrics from the 30-day window model made from a single image (Table S1). We mapped the standardised regression residuals to assess if there were any spatial patterns in statistically significant residual values (Figure 3). Most standardised regression residuals fell within 1.96 standard deviations of the mean for this study, with little apparent spatial pattern in how positive and negative they were throughout the country.
Because our spatial assessment indicated no clear geographical boundaries for algorithm coefficients, we proceeded using a global algorithm using all of the data to test three methods for estimating the satellite’s response for model calibration. Calibration regression models for the median filters for the four time window lengths are shown in Table 1. Model fit significantly improved when increasing data input by taking median image values from one month (adjusted R2 = 0.46) to same year (adjusted R2 = 0.63), and then again to input from all years (adjusted R2 = 0.70), with the predictions tightening around the 1:1 line (Figure 4). RMSE also decreased significantly with increasing time window sizes for each of the median filters. Model coefficients (slope) also decreased with larger time window size when taking median image values, with low CDOM(a440) values tending to be overestimated and larger CDOM(a440) values underestimated in models using smaller time windows (Figure 4).

3.3. Model Validation

As in the calibration results, the quality of the CDOM(a440) prediction in the validation lake set grew quickly with more imagery (Figure 5). For each time window, the fit in the validation set was quite similar to that in the calibration set—e.g., adjusted R2 = 0.70 for the all-images model in the calibration set versus adjusted R2 = 0.66 in the validation set. The results showed (Figure 5) that the models effectively predicted values of CDOM > ln(0) (CDOM > 1) for the various time windows, while low values of CDOM(a440) were consistently overestimated. This overestimation was somewhat reduced in models using data from all years.

3.4. Effects of Adding Imagery

Increased amounts of imagery improved the ability to predict field-gathered CDOM(a440) values (Figure 6). In 118 of the 233 calibration lakes across Canada for which at least 20 clear images were available, better and more consistent regression models were formed as more imagery was added. Considering the same set of 118 lakes, selecting more images from any summer date in the Landsat 8 record systematically improved the regression model between imagery and CDOM (Figure 6). Using a carefully curated single image nearest in time to the sample date, the model had adjusted R2 = 0.45; that model could be considerably improved in the imagery-rich lake subset by selecting any three summer images and taking the median ratio, raising the expected adjusted R2 to about 0.57. Notably, models formed by taking any three randomly selected images were all better than the model with one carefully curated image. The effect of including more imagery leveled off around 12 images, with an expected upper bound asymptote near an adjusted R2 of 0.74 (Figure 6).

3.5. Extra Lakes Considered When the Time Window Was Expanded

In such models that do not require tight timing of field and satellite data, substantially more lakes can be included in a research study. In this dataset, 128 lakes had no clear image within a 30-day window, which would exclude them from model calibration/validation in other approaches. Using the median of band ratios from the rest of the Landsat 8 satellite record, these 128 lakes broadly fit the pattern of the calibration and validation lakes, clustering around the 1:1 line—though with somewhat more scatter in the set of extra lakes (Figure 7). The scatter seemed to be greater for low values of CDOM(a440) in particular. However, by including these lakes, we were able to increase the number of lakes under consideration from 329 to 457, equating to a nearly 40% increase. This demonstrated that future studies could include lakes without matches within a 30-day window for model calibration and validation.

4. Discussion

This study explored the creation of models for predicting field-sampled CDOM in a fixed set of lakes. Gathering and incorporating information from more Landsat 8 images improved our ability to estimate CDOM levels in hundreds of lakes. What was found was that, for a large number of varied lakes across Canada, the median of multiple images was a powerful and robust noise-dampening approach to model development. We were surprised at the strength of adding more images for a large number of lakes across a large portion of southern Canada. In effect, one could select any four summer images and be virtually guaranteed of a model that was superior to one created from a single, curated image near the field sample date. The use of an ensemble of images, even an ensemble of modest size, greatly aided CDOM estimation across a very large area.
Given the time, effort, and expense of gathering field data for CDOM model fits, and the relatively small proportion of Canada’s nearly 1 million lakes larger than 10 ha [20] that have been sampled, field data is a rare resource, and its use should be maximized. In addition to improving the fit of CDOM models, the median method expands the number of lakes that can be considered. Without the constraint of matching cloud-free imagery to a costly field campaign, we were able to considerably expand the scope of analysis. An effective fit in a large number of lakes at a continental scale is especially useful given lingering challenges to transferring or extrapolating models made from a small number of lakes [30,55,64]. In that light, the predictive power of the preferred model in this study can be considered good (adjusted R2 = 0.70, RMSE = 0.54 for the “All Summers Median” model). This is especially the case for CDOM, which is a challenging water property to estimate at broad scales in inland waters [26,65,66].
We found no spatial pattern in residuals of the model fit, indicating that there were no spatial boundaries that needed to be respected for the algorithm calibration process. This was unexpected, given the expanse of the study area and the wide range of lake types encompassed in the study. In previous studies, algorithms are usually locally calibrated either for individual lakes or regions of similar lakes [23,31,43,67] to consider the variability of lake types encompassed in a study. Therefore, algorithm calibration has mainly been tested across a more limited range of lake optical types. However, Deutsch et al. [35] similarly found that a single global algorithm could be used to estimate Secchi disk depth for a large dataset of lakes spread across southern Canada. However, note that both the calibration and validation datasets lacked high CDOM lakes (>11.5 and 10.5 m−1, respectively). Therefore, models developed in this study are applicable only to lakes with low to moderate CDOM levels. Additionally, the model proposed tended to overpredict CDOM(a440) values in lakes with CDOM(a440) < 1 m−1, but this trend was partially mitigated using the “All Summers Median” time window. For future research concerned with pinpointing CDOM concentration in low-CDOM lakes, additional band ratios or other information could be considered.
In this study, we found that taking median satellite image values using increasingly wide time windows consistently resulted in improved algorithm fit (Figure 3). One likely reason we saw this improvement is that repeat satellite data over a given location is inherently variable due to atmospheric influences [68]. By adding more data to the analysis and assessing median band and band ratio data, it is possible that we removed atmospheric artifacts that were not already filtered out through atmospheric correction and data cleaning steps. Therefore, it is possible that taking median satellite image values over wider time windows helped us better observe the true Landsat 8 B3/B4 and B2 surface reflectance over a given water pixel.
We expect that the effectiveness of using the median will be strongest when image-to-image variability is greater than in-lake and among-lake CDOM variability. Each of the remote lakes in this study was visited only once, with a sample taken at a single point in each lake, making it difficult to quantify in-lake CDOM temporal variability. Because the method averages image values from a potentially long period of time, it is not intended to track changes in CDOM over short time scales. That said, many studies have found CDOM to be relatively stable when examining within-season timescales [26,28,69,70]. Other works have found that, at least in some lakes, CDOM can fluctuate over short time windows [17,71]. At decadal time scales, CDOM and related DOC levels have been found to be increasing in freshwaters across boreal and temperate regions in North America and Europe [1,2,72], which has been linked to the decrease of acid rain as a result of the emissions regulations that have been put in place in Europe and North America [2,73]. However, for the specific set of lakes in this study that were sampled from June until September, this variability was apparently not sufficient to limit the effectiveness of median satellite image values over time windows as large as seven years (2013–2019). It is possible that this method would not be applicable during other seasons of the year, when water conditions within lakes may change more rapidly [26].
Despite the apparent dampening effect of the median of a group of images, there were still sources of error and uncertainty that could limit performance in results seen here. First, we did not actively seek out region-specific models at this stage; it is possible that regional models could have improved the fit, at least for some lakes. Second, there may well be other sources of colour than CDOM, particularly in more eutrophic conditions. This might account for some of the variability in higher-CDOM conditions, and might be separately treated in future work. Third, for any given lake, there are additional sources of variability not explored here: CDOM concentration changes throughout a summer and across years, and may vary substantially in different parts of a given lake. Finally, though we tried to create a model that could be used to make broad estimates in a wide range of Canadian lakes, it is worth noting explicitly that only a small fraction of Canada’s vast lake resource was sampled; the model may not be applicable to all lakes in southern Canada.
Future directions for this work could explore how using colour space transformations and optical water properties might improve CDOM(a440) estimates. Transformations to hue–saturation–intensity (HSI) is a simple colour transformation that can be used to develop colour-based image-processing techniques. Niroumand-Jadidi et al. [74] found that colour space transformations showed benefits for estimating water-quality parameters including CDOM. Another possible direction to improve water-quality estimates would be to develop algorithms specifically based on the optical properties of a given waterbody. Various hierarchical, partitional, and hybrid clustering techniques have been used to successfully classify remote sensing reflectance (Rrs) into groups [75,76,77]. Since the NSERC Canadian Lake Pulse Network collected data on various optical water properties as well as in situ reflectance data, classification based on optical types could be explored. Specifically, total suspended sediments (TSS); algal biomass, measured as chlorophyll a (chl-a); and coloured dissolved organic matter (CDOM) data were collected.
Future work could also add other satellite sensors such as Sentinel-2 and Landsat 9, scheduled for launch in autumn 2021. Water-quality parameters have already been successfully estimated using workflows that harmonised Landsat 8 OLI and Sentinel-2 MSI imagery products in Google Earth Engine [17,42], suggesting possible joint Landsat/Sentinel models. By employing harmonised imagery from multiple sensors, revisit time would be reduced, which could considerably increase the chances of obtaining a high number of clear summer images.

5. Conclusions

While creating high-quality models of coloured dissolved organic matter (CDOM) across a lake-rich region, this study demonstrated the benefit, at least in these lakes, of adding additional imagery to sharpen the signal derived from remote sensing. Additionally, this study effectively expanded the number of lakes that were available for consideration: using a larger set of freely available imagery, we were able to make plausible estimates of CDOM in 40% more lakes than if we had used narrower time windows. As we consider projecting results across very large areas, such as continental scales as seen in the study, the ability to consolidate information from a variety of dates provides an opportunity that is lacking if we were to only use data from a single narrowly timed image.

Supplementary Materials

The following are available online at https://www.mdpi.com/article/10.3390/rs13183615/s1, Figure S1. Variable importance as identified by random forest using VSURF; Table S1. No meaningful improvement in model fit was seen when narrower time windows were considered.

Author Contributions

Conceptualization, T.K.-E., J.A.C. and E.D.; methodology, T.K.-E., J.A.C. and E.D.; software, T.K.-E.; validation, T.K.-E.; formal analysis, T.K.-E.; data curation, J.A.C. and T.K.-E.; writing—original draft preparation, T.K.-E.; writing—review and editing, T.K.-E., J.A.C. and E.D.; supervision, J.A.C.; funding acquisition, J.A.C. and T.K.-E. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Natural Sciences and Engineering Research Council of Canada (NSERC) Canadian Lake Pulse Network (Strategic Partnership Network NETGP 479720), an NSERC Collaborative Research and Development Grant (CRDPJ 531233-18), and an NSERC Canada Graduate Scholarship-Master’s (CGS M) to T.K.-E.

Data Availability Statement

Data from the NSERC Canadian Lake Pulse Network are available from the corresponding author only after permissions have been granted from the Lake Pulse Network. With Network permission, graph data, as well as a non-log-transformed view of the scatterplot, are available from the authors.

Acknowledgments

We would like to thank the many project partners and groups who support the Lake Pulse Network, as well as the Lake Pulse field teams who sampled lakes across Canada during the three field seasons. We thank four anonymous reviewers and the editor for their careful and considerate reviews and sage advice, which greatly improved the manuscript.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

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Figure 1. Locations of calibration (grey), validation (blue), and the additional 128 lakes without clear imagery taken within 30 days of sampling (purple) plotted on a map of Canada.
Figure 1. Locations of calibration (grey), validation (blue), and the additional 128 lakes without clear imagery taken within 30 days of sampling (purple) plotted on a map of Canada.
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Figure 2. Overview of the main steps included in the methodology.
Figure 2. Overview of the main steps included in the methodology.
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Figure 3. Map of standardised residuals for global regression model between in situ coloured dissolved organic matter (CDOM) and Landsat 8 B3/B4 and B2 for data obtained within a 30-day window of each other.
Figure 3. Map of standardised residuals for global regression model between in situ coloured dissolved organic matter (CDOM) and Landsat 8 B3/B4 and B2 for data obtained within a 30-day window of each other.
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Figure 4. Predicted versus actual plots for CDOM(a440) regression in the calibration lakes (n = 233). Model fit in the calibration lakes improved markedly by including more imagery from a model made with one curated image for each lake. Improving fits are shown using the median of images in the given 30-day period (panel 2); images from the same summer as the field sample (panel 3); and images from all summers in which Landsat 8 was collected (panel 4). Diagonal lines represent the 1:1 line.
Figure 4. Predicted versus actual plots for CDOM(a440) regression in the calibration lakes (n = 233). Model fit in the calibration lakes improved markedly by including more imagery from a model made with one curated image for each lake. Improving fits are shown using the median of images in the given 30-day period (panel 2); images from the same summer as the field sample (panel 3); and images from all summers in which Landsat 8 was collected (panel 4). Diagonal lines represent the 1:1 line.
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Figure 5. Predicted versus actual plots for CDOM(a440) regression in the validation lakes (n = 96). Regressions were fit using satellite data from different time windows: (1) nearest image within 30 days; (2) median of any clear images in a 30-day window; (3) clear images from same summer as field sample; (4) all clear summer images from all years of the Landsat 8 record (2013–2019). Diagonal lines represent the 1:1 line.
Figure 5. Predicted versus actual plots for CDOM(a440) regression in the validation lakes (n = 96). Regressions were fit using satellite data from different time windows: (1) nearest image within 30 days; (2) median of any clear images in a 30-day window; (3) clear images from same summer as field sample; (4) all clear summer images from all years of the Landsat 8 record (2013–2019). Diagonal lines represent the 1:1 line.
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Figure 6. Overall adjusted R2 over number of images used for CDOM(a440) estimation. Grey points represent adjusted R2 values for a given number of images; violin plots show overall densities of the data for a given number of images; the dashed line represents the estimated asymptote; the black star represents adjusted R2 using a single image closest in time to when in situ sampling took place.
Figure 6. Overall adjusted R2 over number of images used for CDOM(a440) estimation. Grey points represent adjusted R2 values for a given number of images; violin plots show overall densities of the data for a given number of images; the dashed line represents the estimated asymptote; the black star represents adjusted R2 using a single image closest in time to when in situ sampling took place.
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Figure 7. Estimating CDOM(a440) in lakes with sampled CDOM(a440) but that were not in the calibration or validation sets (n = 128). These lakes were left out of model construction and the initial validation because there was no match within 30 days (i.e., no repeat lakes from the calibration or validation sets). Here, we look at only two time windows: (1) clear images from the same summer as field sampling; (2) all clear summer images from all years of the Landsat 8 record (2013–2019). Diagonal lines represent the 1:1 line.
Figure 7. Estimating CDOM(a440) in lakes with sampled CDOM(a440) but that were not in the calibration or validation sets (n = 128). These lakes were left out of model construction and the initial validation because there was no match within 30 days (i.e., no repeat lakes from the calibration or validation sets). Here, we look at only two time windows: (1) clear images from the same summer as field sampling; (2) all clear summer images from all years of the Landsat 8 record (2013–2019). Diagonal lines represent the 1:1 line.
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Table 1. Regression models estimating in situ CDOM(a440) from Landsat 8 B3/B4 and B2 surface reflectance for different time windows. RMSE = root mean square error.
Table 1. Regression models estimating in situ CDOM(a440) from Landsat 8 B3/B4 and B2 surface reflectance for different time windows. RMSE = root mean square error.
Time WindowSample SizeInterceptCoefficient (G/R)Coefficient (B)RMSEMAEBiasAdj. R2Valid-ation Adj. R2Extra Lakes Adj R2
Thirty-day Window Nearest2333.96−2.91−0.460.730.550.310.450.47n/a
Thirty-day Window Median2334.04−3.1−0.460.720.540.290.460.55n/a
Median of Same Summer2335−3.89−0.580.590.490.2350.630.640.49
Median of All Summers2334.41−4.14−0.460.540.430.190.70.660.57
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Koll-Egyed, T.; Cardille, J.A.; Deutsch, E. Multiple Images Improve Lake CDOM Estimation: Building Better Landsat 8 Empirical Algorithms across Southern Canada. Remote Sens. 2021, 13, 3615. https://doi.org/10.3390/rs13183615

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Koll-Egyed T, Cardille JA, Deutsch E. Multiple Images Improve Lake CDOM Estimation: Building Better Landsat 8 Empirical Algorithms across Southern Canada. Remote Sensing. 2021; 13(18):3615. https://doi.org/10.3390/rs13183615

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Koll-Egyed, Talia, Jeffrey A. Cardille, and Eliza Deutsch. 2021. "Multiple Images Improve Lake CDOM Estimation: Building Better Landsat 8 Empirical Algorithms across Southern Canada" Remote Sensing 13, no. 18: 3615. https://doi.org/10.3390/rs13183615

APA Style

Koll-Egyed, T., Cardille, J. A., & Deutsch, E. (2021). Multiple Images Improve Lake CDOM Estimation: Building Better Landsat 8 Empirical Algorithms across Southern Canada. Remote Sensing, 13(18), 3615. https://doi.org/10.3390/rs13183615

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