Connection of Cancer Exosomal LncRNAs, Sponging miRNAs, and Exosomal Processing and Their Potential Modulation by Natural Products
Abstract
:Simple Summary
Abstract
1. Introduction
2. Cancer Exosomal lncRNAs, Sponging miRNAs, and Exosome Processing (Secretion and Assembly)
2.1. Cancer Exosomal lncRNAs and Their Sponging miRNAs
2.2. The Exosomal Processing Targets of Exosomal lncRNA-Sponging miRNAs
3. Relationship between Tumor Microenvironments (TMEs), Sponging miRNAs, and Exosomal Processing Targets
3.1. TME and Its Associated lncRNAs
3.2. Potential Functions of CAF-Associated lncRNAs That Sponge miRNAs and Modulate miRNA-Targeted Exosomal Processing Genes
3.3. Potential Functions of CSC-Associated lncRNAs That Sponge miRNAs and Modulate miRNA-Targeted Exosomal Processing Genes
3.4. Potential Functions of TAM-Associated lncRNAs That Sponge miRNAs and Modulate the miRNA-Targeted Exosomal Process
4. The Potential Sponging miRNAs and Exosomal Processing Targets for Natural-Product-Modulated lncRNAs
4.1. The Predicted Sponging miRNAs of Natural-Product-Downregulated lncRNAs
4.2. Predicted Sponging miRNAs of lncRNAs Upregulated by Natural Products
4.3. The Predicted Exosomal Processing Targets of Sponging miRNAs for Natural-Product-Downregulated and -Upregulated lncRNAs
4.4. Overview of Natural Products That Modulate the Exosomal lncRNA–miRNA Axis to Regulate Exosomal Processing
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Exosomal lncRNAs | Sponging miRNAs | Sponging Function | Exosomal Processing Targets |
---|---|---|---|
HEIH [40] | miR-939-5p (colon ca) [50] | proliferation (+) | X |
LINC02418 [41] | miR-4677-3p (lung ca) [51] | proliferation (+) | X |
POU3F3 [40] | miR-127-5p (cervical ca) [52] | proliferation (+) | X |
GAPLINC [42] | miR-211-3p (gastric ca) [53] | proliferation (+) | X |
SNHG8 [43] | miR-663a (colon ca) [54] | proliferation (+) | X |
SNHG16 [39] | miR-200a-3p (colon ca) [55] | proliferation (+) | X |
UFC1 [32] | miR-498 (gastric ca) [56] | proliferation (+) | X |
AFAP1-AS1 [39] | miR-195-5p (breast ca) [57] | proliferation (+) | MYO5B, VPS4A |
BCAR4 [40] | miR-370-3p (bladder ca) [58] | proliferation (+) | ATP9A, RAB11A, RAB7A |
CCAT2 [39] | miR-424-5p (ovarian ca) [59] | proliferation (+) | MYO5B, VPS4A |
CRNDE [44] | miR-338-3p (lung ca) [60] | proliferation (+) | RAB11A |
DLX6-AS1 [32] | miR-199a-5p (cervical ca) [61]/miR-223-3p (bladder ca) [62] | proliferation (+) | ATP9A/MYO5B |
HNF1A-AS1 [45] | miR-17-5p (lung ca) [63] | proliferation (+) | MYO5B |
HOXA-AS2 [44] | miR-520c-3p (breast ca) [64] | proliferation (+) | RAB11A, SDC1 |
NNT-AS1 [41] | miR-363-3p (gastric ca) [65]/miR-129-5p (lung ca) [66] | proliferation (+) | VPS4B/ATP9A, PDCD6IP, VPS4B |
PCA3 [44] | miR-106b-5p (ovarian ca) [67] | proliferation (+) | MYO5B, TSG101 |
PCAT1 [46] | miR-149-5p (colon ca) [68]/miR-124-3p (ovarian ca) [69]/miR-3667-3p (prostate ca) [70] | proliferation (+) | CD34, VPS4A/MYO5B, RAB11A, RAB27A, SDC1, VPS4B/SMPD3 |
SBF2-AS1 [39] | miR-361-5p (cervical ca) [71] | proliferation (+) | SDCBP |
SNHG11 [47] | miR-324-3p (pancreatic ca) [47] | proliferation (+) | RAB7B |
SNHG14 [48] | miR-340-5p (lung ca) [72]/miR-101-3p (pancreatic ca) [73] | proliferation (+) | PDCD6IP, VPS4A/RAB27A |
SNHG6 [43] | miR-181a-5p (colon ca) [74] | proliferation (+) | PRKN |
SNHG7 [49] | miR-186-5p (breast ca) [74] | proliferation (+) | ATP9A, VPS4B |
SOX2-OT [41] | miR-194-5p (gastric ca) [75] | proliferation (+) | SDC4 |
LNCARSR [39] | miR-20b-3p (glioblastoma) [76] | chemoresistance (+) | X |
LNCRNA-ATB [39] | miR-204-3p (glioma) [16] | migration (+) | RAB11A |
LncRNAs | LncRNA Status (TME) | Sponging miRNAs | Sponging Function | Exosomal Processing Targets |
---|---|---|---|---|
CASC9 [78] | CAFs | miR-383-5p (cervical ca) [86] | proliferation | X |
POU3F3 [78] | CAFs | miR-127-5p (cervical ca) [52] | proliferation | X |
SNHG3 [78] | CAFs | miR-196a-5p (osteosarcoma) [87] | proliferation | X |
CDKN2B-AS1 [78] | CAFs | miR-125a-5p (oral ca) [88]/miR-411-3p (ovarian ca) [89] | proliferation | VPS4B/SDCBP |
ZEB2-AS1 [78] | CAFs | miR-27b-3p (bladder ca) [90] | proliferation | SMPD3 |
CCAL [78] | CAFs | miR-149-5p (gastric ca) [91] | metastasis | CD34, VPS4A |
TCF7 [78] | CSCs | miR-155-5p (cervical ca) [92] | invasion | X |
Lnc34a [78] | CSCs | miR-34a-5p (colon ca) [93] | proliferation | VPS4A |
LNCBRM [78] | CSCs | miR-204-3p (colon ca) [94] | proliferation | RAB11A |
DLX6-AS1 [78] | CSCs | miR-199a-5p (cervical ca) [61]/miR-223-3p (bladder ca) [62] | proliferation | ATP9A/MYO5B |
LINC01567 [78] | CSCs | miR-93-5p (colon ca) [95] | proliferation | MYO5B |
HAND2-AS1 [78] | CSCs | miR-1275 (leukemia) [96] | proliferation | X |
DGCR5 [78] | CSCs | miR-195-5p (laryngeal ca) [97]/miR-506-3p (laryngeal ca) [98] | radiosensitivity | MYO5B, VPS4A/MYO5B, RAB11A, RAB27A, SDC1, SDC4, STEAP3, VPS4B |
RP11-361F15.2 [78] | TAMs | miR-30c-5p (osteosarcoma) [83] | invasion | RAB11A |
RPPH1 [78] | TAMs | miR-326 (lung ca) [99] | invasion | CD34 |
FGD5-AS1 [84] | TAMs | miR-129-5p (glioblastoma) [100]/miR-302e (colon ca) [101] | proliferation | ATP9A, PDCD6IP, VPS4B/RAB11A, RAB7A, SDC1, SMPD3 |
HCG18 [85] | TAMs | miR-1271-5p (colon ca) [102] | proliferation | MYO5B, RAB7A |
LINC01089 [78] | TAMs | miR-27a-3p (cervical ca) [103] | proliferation | X |
TP53COR1 [78] | TAMs | miR-9-5p (liver ca) [104] | proliferation | CD34, PDCD6IP, SDC1, SMPD3, STEAP3 |
Natural Products | lncRNAs | Sponging miRNAs | Sponging Function | Exosomal Processing Targets | |
---|---|---|---|---|---|
Downregulation | Anacardic acid [105] | MIR210HG | miR-1226-3p (breast ca) [106] | invasion | X |
Anisomycin [78,107] | BACE1-AS | miR-377-3p (liver ca) [108] | invasion | X | |
β-Elemene [78,109] | HULC | miR-122-5p (osteosarcoma) [110]/miR-133b (pancreatic ca) [111] | invasion | X | |
Polydatin [112], Solamargine [113] | TUG1 | miR-384 (nsopharynx ca) [114] | migration | PDCD6IP | |
Curcumin [115] | LINC-ROR | miR-145 (endometrial ca) [116] | differentiation | X | |
Curcumin [117], Sulforaphane [118], Bharangin [105], Ginsenosides [105], Triptolide [119] | H19 | miR-141-3p (gastric ca) [120]/miR-22-3p (gastric ca) [121], miR-152 (glioma) [122] | proliferation | X | |
Sulforaphane [105] | LINC01116 | miR-592 (leukemia) [123] | proliferation | X | |
Solamargine [113] | HOTTIP | miR-216a-5p (prostate ca) [124] | proliferation | X | |
Formononetin [57] | AFAP1-AS1 | miR-195-5p (breast ca) [57] | proliferation | MYO5B, VPS4A | |
Resveratrol [105] | MIR4435-2HG | miR-802 (melanoma) [125] | proliferation | RAB7A, SDC4 | |
Luteolin [105] | BANCR | miR-195-5p (pancreatic ca) [126] | proliferation | MYO5B, VPS4A | |
Hyperoside, Baicalein [78,127] | CCAT1 | miR-410-3p (glioma) [128]/miR-152-5p (lung ca) [129] | proliferation | RAB11A/SDC1, SMPD3 | |
Gemini Curcumin [130] | CCAT2 | miR-424-5p (ovarian ca) [59] | proliferation | MYO5B, VPS4A | |
Calycosin [105] | EWSAT1 | miR-330-5p (cervical, nasopharynx ca) [131,132] | proliferation | CD34, PDCD6IP | |
Berberis, Calycosin, Curcumin, 3,30-Diindolylmethane, Genistein, Silibinin [105] | HOTAIR | miR-217-5p (liver ca) [133] | proliferation | ATP9A, PDCD6IP, STEAP3 | |
Melatonin [134] | JPX | miR-362-3p (lung ca) [135] | proliferation | PDCD6IP | |
Epigallocatechin-3-gallate [105] | LINC00511 | miR-515-5p (gastric ca) [136]/miR-424-5p (liver ca) [137] | proliferation | RAB11A/MYO5B, VPS4A | |
Betulinic acid [78], Quercetin [138], Resveratrol K [105] | MALAT1 | miR-101-3p (colon ca) [139]/miR-129-5p (breast ca) [140] | proliferation | RAB27A/ATP9A, PDCD6IP, VPS4B | |
Anisomycin [78,141,142] | MEG3 | miR-21-5p (oral ca) [143]/miR-708-5p (colon ca) [144] | proliferation | MYO5B, RAB11A/SDC1 | |
Quercetin [138] | MIAT | miR-495-3P (leukemia) [145]/miR-330-5p (ovarian ca) [146] | proliferation | SDC4/CD34, PDCD6IP | |
3,30-Diindolylmethane [105] | PCGEM1 | miR-145-5p (prostate ca) [147] | proliferation | STAM | |
Curcumin [78], Cardamonin [148] | PVT1 | miR-30d-5p (gallbladder ca) [149] | proliferation | RAB11A | |
Epigallocatechin-3-gallate [105] | SOX2-OT | miR-194-5p (gastric ca) [75] | proliferation | SDC4 | |
Gambogic acid [105] | SPRY4-IT1 | miR-101-3p (colon ca) [150] | proliferation | RAB27A | |
Huaier [78,151] | TP73-AS1 | miR-329-3p (cervical ca) [152] | proliferation | PDCD6IP | |
Curcumin [105], Usnic acid [153] | UCA1 | miR-26a-5p (gastric ca) [154]/miR-144-3p (lung ca) [155] | proliferation | RAB11A/PDCD6IP, SMPD3, VPS4B | |
Atractylenolide II [156], Platycodin D [157] | XIST | miR-200b-3p (liver ca) [158] | proliferation | PRKN, STAM | |
Silibinin [105] | ZFAS1 | miR-135a-5p (nasopharynx ca) [159] | proliferation | PDCD6IP, SDCBP | |
Upregulation | Curcumin [105] | TUSC7 | miR-224-5p (esophagus ca) [160]/miR-10a-5p (glioblastoma) [161] | chemoresistance | ATP9A/SDC1, SMPD3 |
Baicalein [162] | PAX8-AS1 | miR-96-5p (thyroid ca) [163] | proliferation | MYO5B, RAB27A, RAB7A | |
Bharangin, Curcumin, Gambogic acid [105], Corylin [164] | GAS5 | miR-222-3p (leukemia, gastric ca) [165,166]/miR-196a-5p (breast ca) [167] | proliferation | X | |
Ginsenosides [105] | STXBP5-AS1 | miR-96-5p (cervical ca) [168] | proliferation | MYO5B, RAB27A, RAB7A | |
Resveratrol [105] | PCAT29 | miR-494 (lung ca) [169] | proliferation | X |
Exosome Processing | Sponging miRNAs | lncRNAs | Natural Products | Exosome Processing | Sponging miRNAs | lncRNAs | Natural Products |
---|---|---|---|---|---|---|---|
ATP9A | 217-5p | HOTAIR | Berberis, Calycosin, Curcumin, 3,30-diindolylmethane, Genistein, Silibinin | PDCD6IP | 330-5p | EWSAT1 | Calycosin |
129-5p | MALAT1 | Betulinic acid, Quercetin, Resveratrol | 217-5p | HOTAIR | Berberis, Calycosin, Curcumin, 3,30-diindolylmethane, Genistein, Silibinin | ||
224-5p | TUSC7 | Curcumin | 362-3p | JPX | Melatonin | ||
CD34 | 330-5p | EWSAT1 | Calycosin | 129-5p | MALAT1 | Betulinic acid, Quercetin, Resveratrol | |
MIAT | Quercetin | 330-5p | MIAT | Quercetin | |||
MYO5B | 195-5p | AFAP1-AS1 | Formononetin | 329-3p | TP73-AS1 | Huaier | |
BANCR | Luteolin | 384 | TUG1 | Polydatin, Solamargine | |||
424-5p | CCAT2 | Gemini Curcumin | 144-3p | UCA1 | Curcumin, Usnic acid | ||
LINC00511 | epigallocatechin-3-gallate | 135a-5p | ZFAS1 | Silibinin | |||
21-5p | MEG3 | Anisomycin | SDC1 | 152-5p | CCAT1 | Hyperoside, Baicalein | |
96-5p | PAX8-AS1 | Baicalein | 708-5p | MEG3 | Anisomycin | ||
STXBP5-AS1 | Ginsenosides | 10a-5p | TUSC7 | Curcumin | |||
PRKN | 200b-3p | XIST | Atractylenolide II, Platycodin D | SDC4 | 802 | AK001796 | Resveratrol |
RAB11A | 410-3p | CCAT1 | Hyperoside, Baicalein | 495-3p | MIAT | Quercetin | |
515-5p | LINC00511 | epigallocatechin-3-gallate | 194-5p | SOX2-OT | epigallocatechin-3-gallate | ||
21-5p | MEG3 | Anisomycin | SDCBP | 135a-5p | ZFAS1 | Silibinin | |
NBR2 | Curcumin | SMPD3 | 152-5p | CCAT1 | Hyperoside, Baicalein | ||
30d-5p | PVT1 | Curcumin, Cardamonin | 10a-5p | TUSC7 | Curcumin | ||
26a-5p | UCA1 | Curcumin, Usnic acid | 144-3p | UCA1 | Curcumin, Usnic acid | ||
RAB27A | 101-3p | MALAT1 | Betulinic acid, Quercetin, Resveratrol | STAM | 128-3p | HOTTIP | Solamargine |
96-5p | PAX8-AS1 | Baicalein | 145-5p | PCGEM1 | 3,30-diindolylmethane | ||
101-3p | SPRY4-IT1 | Gambogic acid | 200b-3p | XIST | Atractylenolide II, Platycodin D | ||
96-5p | STXBP5-AS1 | Ginsenosides | STEAP3 | 217-5p | HOTAIR | Berberis, Calycosin, Curcumin, 3,30-diindolylmethane, Genistein, Silibinin | |
RAB7A | 802 | AK001796 | Resveratrol | VPS4A | 195-5p | AFAP1-AS1 | Formononetin |
96-5p | PAX8-AS1 | Baicalein | BANCR | Luteolin | |||
STXBP5-AS1 | Ginsenosides | 424-5p | CCAT2 | Gemini curcumin | |||
LINC00511 | epigallocatechin-3-gallate | ||||||
VPS4B | 128-3p | HOTTIP | Solamargine | ||||
129-5p | MALAT1 | Betulinic acid, Quercetin, Resveratrol | |||||
144-3p | UCA1 | Curcumin, Usnic acid |
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Chuang, Y.-T.; Shiau, J.-P.; Tang, J.-Y.; Farooqi, A.A.; Chang, F.-R.; Tsai, Y.-H.; Yen, C.-Y.; Chang, H.-W. Connection of Cancer Exosomal LncRNAs, Sponging miRNAs, and Exosomal Processing and Their Potential Modulation by Natural Products. Cancers 2023, 15, 2215. https://doi.org/10.3390/cancers15082215
Chuang Y-T, Shiau J-P, Tang J-Y, Farooqi AA, Chang F-R, Tsai Y-H, Yen C-Y, Chang H-W. Connection of Cancer Exosomal LncRNAs, Sponging miRNAs, and Exosomal Processing and Their Potential Modulation by Natural Products. Cancers. 2023; 15(8):2215. https://doi.org/10.3390/cancers15082215
Chicago/Turabian StyleChuang, Ya-Ting, Jun-Ping Shiau, Jen-Yang Tang, Ammad Ahmad Farooqi, Fang-Rong Chang, Yi-Hong Tsai, Ching-Yu Yen, and Hsueh-Wei Chang. 2023. "Connection of Cancer Exosomal LncRNAs, Sponging miRNAs, and Exosomal Processing and Their Potential Modulation by Natural Products" Cancers 15, no. 8: 2215. https://doi.org/10.3390/cancers15082215
APA StyleChuang, Y. -T., Shiau, J. -P., Tang, J. -Y., Farooqi, A. A., Chang, F. -R., Tsai, Y. -H., Yen, C. -Y., & Chang, H. -W. (2023). Connection of Cancer Exosomal LncRNAs, Sponging miRNAs, and Exosomal Processing and Their Potential Modulation by Natural Products. Cancers, 15(8), 2215. https://doi.org/10.3390/cancers15082215