Functions of the RNA Editing Enzyme ADAR1 and Their Relevance to Human Diseases
Abstract
:1. Introduction
1.1. Mechanism of A-to-I Editing
1.2. ADAR1 Isoforms and Domain Structures
2. ADAR1′s Role in Immunity
2.1. Hematopoiesis
2.2. Type I Interferonopathies
3. Editing of Exogenous Viral dsRNA
3.1. Editing Affects Viral Recognition by RLRs
3.2. Editing on Viral Coding Sequences Affects Viral Life Cycles
3.3. Editing-Independent Interactions of ADAR1 with Other Interferon-Stimulated Proteins
4. Editing of Coding Endogenous dsRNA
4.1. AZIN1
4.2. FLNB
4.3. NEIL1
4.4. GLI1
4.5. PTPN6
4.6. GABRA3
4.7. RHOQ
4.8. CAPS1
4.9. HTR2C
4.10. GRIA2
4.11. Comparing ADAR1′s and ADAR2′s Substrates
5. ADAR1′s Effects on MicroRNA
5.1. Editing of miRNA
5.2. Editing of Seed Sequence Changes mRNA Targets
5.3. Editing-Independent Effects of ADAR1 on miRNA Processing
6. ADAR′s Effects on Other Noncoding RNA
6.1. Editing of Alu dsRNA
6.2. Editing Affects Interactions between Intronic lncRNA and Coding mRNA
6.3. Editing of LINE1 Retrotransposon
7. Regulation of ADAR1 Expression
8. Conclusions and Future Outlook
Acknowledgments
Conflicts of Interest
References
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Disease | Disease Classification | ADAR1 Isoform | Editing-Dependent | Target RNA | Regulation | Ref. |
---|---|---|---|---|---|---|
Acute myeloid leukemia | Growth receptor proliferation | ? * | Yes | PTPN6 mRNA | Inhibition of post-transcriptional processing of phosphatase | [74] |
Aicardi-Goutieres syndrome (AGS) | Autoimmune | P150 | Yes | Endogenous dsRNA | Interferon; Inhibition of melanoma differentiation-associated protein 5 – mitochondrial activation signaling complex (MDA5-MAVS) | [33] |
Atherosclerosis | Inflammation | P150 | Yes | Alu dsRNA in CTSS mRNA | Disruption of dsRNA structure | [130] |
Bilateral striatal necrosis (BSN) | Autoimmune | P150 | Yes | Endogenous dsRNA | Interferon; Inhibition of MDA5-MAVS | [36] |
Breast cancer | Metastasis | P110 | Yes | GABRA3 mRNA | Inhibition of Akt activation, disruption of localization | [77] |
Cerebellar tumor | Reduced tumor formation | ? | Yes | GLI1 mRNA | Change in structure of mRNA of glioma associated oncogene 1 (GLI1) | [73] |
Dyschromatosis symmetrica hereditaria (DSH) | Autoimmune | P150 | Yes | Endogenous dsRNA | Interferon; Inhibition of MDA5-MAVS | [34] |
Epilepsy, acute spinal cord injury | Neurological | ? | Yes | GRIA2 mRNA | Enhanced synaptic responses | [88,89,90,91] |
Epstein-Barr virus | Anti-viral | ? | Yes | Viral miR-BART6-5p | Suppression of RNA-induced silencing complex (RISC) loading, inhibition of Dicer | [114] |
Epstein-Barr virus | Switch to lytic cycle | ? | Yes | OriP transcripts | Inhibition of miRNA processing; direct interaction between OriPtL and ADAR1 | [55] |
Esophageal squamous cell cancer (ESCC) | Cancer cell proliferation | P110 | Yes | FLNB mRNA | ADAR1 gene amplification | [67] |
Gastric cancer, Non-squamous cell lung carcinoma (NSCLC), colorectal cancer | Metastasis | ? | Yes | RHOQ mRNA | ? | [80] |
Hepatocellular carcinoma (HCC), ESCC | Cancer cell proliferation | P110 | Yes | AZIN1 mRNA | Increase in ADAR1 levels and editing | [63] |
Hepatitis C virus | Antiviral | P150 | Yes | Viral RNA | Degradation of edited RNA | [54] |
Hepatitis D virus | Switch from proliferation to packaging | P110 | Yes | Viral HDAg-S gene | Disruption of translation termination | [52,53] |
HIV-1 | Proviral | P110 and P150 | Yes | Viral p24 Gag, Rev, and Tat mRNA | Increase in ADAR1 expression | [57,58,59,60,135] |
HIV-1 | Pro-viral | P150 | No | - | Inhibition of protein kinase R (PKR) phosphorylation | [60] |
HIV-1 | Antiviral | ? | Yes | HIV-1 envelope glycoprotein | Degradation of edited RNA | [56] |
Human T-cell leukemia virus 1 and -2 (HTLV-1 and -2) | Pro-viral | P150 | No | - | Inhibition of PKR phosphorylation | [57] |
Influenza A virus | Antiviral | ? | Yes | Viral ssRNA | TLR7 sensing; IFN | [50] |
Locomotion, learning disorders | Neurological | ? | Yes | CAPS1 mRNA | Increase in catecholamine secretion | [81] |
Lung cancer | Metastasis | ? | Yes | miR-381 | ? | [71] |
Measles virus | Proviral | P150 | Yes | Viral DI-RNA | Destabilization of DI-RNA | [49] |
Measles virus | Pro-viral | P150 | No | - | Inhibition of PKR phosphorylation | [63] |
Measles virus | Anti-viral | P150 | Yes | ? | ? | [50] |
Enhanced metabolism Depression | Neurological | P110 | Yes | HTR2C mRNA | Synaptic transmission | [82,83] |
Metastatic melanoma, gastric, thyroid and lung cancers | Suppress metastasis | ? | Yes | Pri-miR-455-5p | miRNA processing | [103] |
NSCLC | Cancer cell proliferation | ? | Yes | NEIL1 mRNA | ADAR1 gene amplification | [72] |
Pancreatic cancer, papillary thyroid carcinoma, prostate carcinoma and metastatic melanoma | Cancer, metastasis | ? | No | miR-221/222 | Decrease in miR-221/222 synthesis | [119] |
Prostate cancer | Malignancy | ? | Yes | PCA3/PRUNE2 complex | mRNA translation | [133] |
Spastic paraplegia | Autoimmune | ? | Yes | Endogenous dsRNA | Interferon; Inhibition of MDA5-MAVS | [37] |
Subacute sclerosing panencephalitis (SSPE) in measles virus | Decreased viral assembly and release | ? | Yes | Viral M gene | Inhibition of M protein production | [50] |
Vesicular stomatitis virus | Pro-viral | P150 | No | - | Inhibition of PKR phosphorylation | [22] |
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Song, C.; Sakurai, M.; Shiromoto, Y.; Nishikura, K. Functions of the RNA Editing Enzyme ADAR1 and Their Relevance to Human Diseases. Genes 2016, 7, 129. https://doi.org/10.3390/genes7120129
Song C, Sakurai M, Shiromoto Y, Nishikura K. Functions of the RNA Editing Enzyme ADAR1 and Their Relevance to Human Diseases. Genes. 2016; 7(12):129. https://doi.org/10.3390/genes7120129
Chicago/Turabian StyleSong, Chunzi, Masayuki Sakurai, Yusuke Shiromoto, and Kazuko Nishikura. 2016. "Functions of the RNA Editing Enzyme ADAR1 and Their Relevance to Human Diseases" Genes 7, no. 12: 129. https://doi.org/10.3390/genes7120129
APA StyleSong, C., Sakurai, M., Shiromoto, Y., & Nishikura, K. (2016). Functions of the RNA Editing Enzyme ADAR1 and Their Relevance to Human Diseases. Genes, 7(12), 129. https://doi.org/10.3390/genes7120129