1. Introduction
Pepper (
Capsicum annuum L.) is a commonly cultivated crop, from the family Solanaceae, in Egypt and all over the world. In agricultural production, soil-borne pathogens are the main problems causing reductions in crop yield and quality. The most dreaded diseases of vegetables are root rot, damping-off, charcoal rot, and wilt caused by
Rhizoctonia solani,
Alternaria solani,
F. oxysporum f.sp.
capsici,
Sclerotium rolfsii,
Macrophomina phaseolina, and
Pythium spp. [
1]. Pepper is susceptible to several soil-borne pathogenic fungi, causing severe plant death and large losses all over the world [
2]. However,
Fusarium wilt is known to be one of the most important devastating and harmful diseases affecting pepper plants. Pre- and post-emergence damping-off, root rot, wire stem, seed decay, and hypocotyl or tap root with necrotic spots, all of these symptoms are caused by
R. solani at multiple growth stages [
3].
F. oxysporum and
R. solani were the most common isolates from root-rooted and wilted pepper plants. Pathogenicity tests on the isolated pathogens from the infected pepper plants demonstrated that plants were infected with
F. oxysporum f.sp.
capsici and
R. solani [
4]. Likewise, plants infected with
F. oxysporum f.sp. capsici showed damping-off and vascular wilt symptoms [
5].
Biological control could be a successful strategy for managing diseases and feasible pepper production. Biocontrol agents (BCAs) control plant pathogens through several mechanisms, such as fungistasis, antibiosis, hyperparasitism, induced systemic resistance, and modification of the rhizosphere [
6]. Plant growth-promoting fungi (PGPF) are a group of non-pathogenic soil-inhabiting fungi that improve several growth characters after treatments in numerous plants [
6,
7]. Typically, PGPF are useful for the management of soil-borne fungi [
5]. Beneficial bacterial and fungal isolates (
Pseudomonas fluorescens,
Bacillus subtilis,
Fusarium equiseti,
Penicillium simplicissmum,
Trichoderma viride, and
T. harzianum) were effective in soil-borne disease control and enhancement of plant growth [
2,
5,
6]. The non-pathogenic isolates of
F. moniliforme,
F. oxysporum,
F. solani, and
F. merismoides reduced wilt incidence in tomato [
8].
Pathogen infection is associated with induced genes encoding pathogenesis-related (PR) proteins. Plants have evolved a variety of defensive mechanisms to restrict pathogen attack, including biochemical, physiological, molecular, and cellular processes and barriers, as well as inducible defense response [
5,
6,
7,
9]. In PGPF treated onion plants, accumulation of peroxidase and polyphenol oxidase were stimulated in comparison to the control infected with
Sclerotium cepivorum. Additionally, exalted expressions of defense-related genes,
PR1 and
PR2, have been described in plants treated with PGPF [
9]. Various defense mechanisms against pathogen infection were explored in chili plants [
10]. The
CaChi2 gene was involved in resistance to
F. oxysporum f.sp.
capsici in chili plants. The objective of this research was to test the efficiency of certain bioagents in controlling pepper root rot and wilt diseases under greenhouse conditions. Additionally, the activities of defense enzymes and expression of defense genes were evaluated.
4. Discussion
Pepper (
Capsicum annuum L.) is a major commercial crop all over the world, with a huge societal and economic impact. It is one of Egypt’s most popular vegetable crops, cultivated either in open fields or in plastic greenhouses under a protected farming system. Pepper plants may be infected with various pathogens, including soil-borne pathogens [
22]. In the greenhouse and fields of pepper plants, many fungal isolates from the genera
Fusarium,
Macrophomina,
Rhizoctonia,
Verticilium,
Pythium, and
Sclerotinia frequently cause damping-off, root rot, and wilt diseases [
23,
24]. Many researchers have observed that
Fusarium wilt of pepper, caused by
Fusarium spp., has resulted in significant reductions in pepper production in many countries around the world [
22]. The use of a sustainable disease management strategy is necessary to reduce the impact of these diseases. Biological control is a long-term approach for disease management and healthy pepper production.
P. polymyxa and
T. longibrachiatum were isolated and identified by morphological and molecular biology techniques. Similarly,
P. putida strain F1 was successfully identified based on the sequence of 16S rDNA comparing the sequence similarities with the related bacterial species in Gene bank [
12]. In terms of antagonistic ability, the obtained findings showed that all of the tested bio-agents could significantly decrease the linear growth of
F. oxysporum f.sp.
capsici and
R. solani. The results are in agreement with Sahii and Khalid [
25], who found that the mycelial growth of
F. oxysporum was hampered as a response to the antagonistic effect of
Trichoderma sp. The
R. solani mycelial diameter, as well as infection with root rot and damping-off diseases, were substantially decreased by
T. harzianum isolate [
26].
Many researchers have been interested in biological control mechanisms in recent decades. Pathogens are directly challenged by bioagents via hyperparasitism, antibiotic synthesis, and lytic enzyme production, as well as indirectly through competition for space and nutrients, developing systemic resistance, and encouraging plant development [
27]. Using a scanning electron microscope, we discovered overgrowth and lysis of
F. oxysporum f.sp.
capsici and
R. solani in dual cultures with
T. longibrachiatum, as well as morphological anomalies such as atrophy and lysis using
P. polymyxa in both fungal mycelia. Parasitism of pathogen fungi was reported by
Trichoderma species in other studies [
13]. Scanning electron microscopic analysis revealed that
T. harzianum strains antagonist with
R. solani [
13].
T. harzianum Th-9 isolate overgrew and coiled around the
R. solani cells, invading and damaging the host hypha. Through the mechanical activity, the host cells are penetrated. Secretion of antifungal compounds has been found to prevent the growth of different plant pathogens [
7].
Plant growth promoting fungi (PGPF) is a kind of saprophyte that lives in the soil and promotes plant development. As a consequence of seed and seedling treatments, all of the evaluated biocontrol agents substantially decreased the severity of
Fusarium wilt and root rot caused by
F. oxysporum f.sp.
capsici and
R. solani compared to the control treatment. In several plants–PGPF combinations, colonization of roots with PGPF leads to a state of resistance in the whole plant known as induced systemic resistance. ISR in different plant species was introduced such as
Arabidopsis thaliana, cucumber, and tobacco by PGPF application [
6]. Curiously, PGPF isolates of
Penicillium simplicissmum GP17-2,
Trichoderma asperellum SKT-1,
Phoma sp. GS 8-3,
F. equiseti GF18-3, and
Phoma sp. GS8-1 were highly effective in reducing the disease severity of white rot disease of onions [
9]. In this study, the protective method of both types of biocontrol agents as individual treatments resulted in a substantial decrease in the disease. Cucua et al. [
28] evaluated the efficacy of two biological control agents (BCAs) in suppressing
F. oxysporum f.sp.
lycopersici (
Bacillus subtilis QST 713 and
Trichoderma spp. TW2). Additionally,
P. polymyxa NSY50 application on cucumber plants infected with
F. oxysporum successfully decreased the incidence of
Fusarium wilt [
29]. In this study, the increase of phenolics and PR-Proteins such as peroxidase (PO), and polyphenoloxidase (PPO) inside pepper roots may have helped to limit
F. oxyporum and
R. solani infections. The accumulation levels of defense enzymes and the transcription levels of
PR1 and
PR5 genes were increased in cucumber plants treated with
T. atroviride (TRS25) and led to better resistance against
R. solani [
30]. The fact that induction treatments substantially increased
CaPR4 gene expression suggests that this gene is involved in systemic resistance to
F. oxysporum and
R. solani. JA and ET activated
PR4,
PR5, and
PDF1.2 in a synergistic manner [
6]. Induced systemic resistance mediated by
P. simplicisimum GP17-2 in
Arabidopsis and tobacco enhanced the expression of different pathogenesis-related genes [
6].
All treatments significantly enhanced growth characters in plants relative to the control infected with
F. oxysporum and
R. solani. PGPF has been shown to improve plant growth and disease control [
6]. Several studies showed that
Trichoderma isolates were considered proper biofertilizers, since they could improve the capacity of nutrients uptake in plants and the resistance toward plant pathogen [
9]. Furthermore,
P. polymyxa NMA1017 promoted plant growth through nitrogen fixation and siderophore synthesis, which led to increased crop production [
31].