Reconsideration of the Semaphorin-3A Binding Motif Found in Chondroitin Sulfate Using Galnac4s-6st-Knockout Mice
Abstract
:1. Introduction
2. Materials and Methods
2.1. Enzyme-Linked Immunosorbent Assay
2.2. Animals
2.3. Real-Time PCR Analysis
2.4. Immunohistochemistry
2.5. Immunoblotting
2.6. Statistical Analysis
3. Results
3.1. Determination of the Epitope of the Cat316 Antibody
3.2. Determination of Structural Requirements for Recognition by WFA
3.3. Examination of the Sema3A-Binding Motif
3.4. Analysis of Physiological Significance of the Binding of Sema3A to CS-E
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Assay ID | Reporter Dye | Context Sequence | Gene Symbol | Gene Name | Species | NCBI Gene Reference |
---|---|---|---|---|---|---|
Mm00545794_m1 | FAM | 5′-CTCAGAAGAAGTTCCAGACCATGAC-3′ | Acan | aggrecan | Mus musculus | NM_007424.2 L07049.1 |
Mm00476090_m1 | FAM | 5′-TCTACTGCTTCCGAGACTCTGCCCA-3′ | Bcan | brevican | Mus musculus | NM_007529.2 NM_001109758.1 X87096.1 BC052032.1 AK144405.1 |
Mm00484007_m1 | FAM | 5′-AGGAAGATCCCACAGATCCCTGCGA-3′ | Ncan | neurocan | Mus musculus | NM_007789.3 X84727.1 BC065118.1 |
Mm01283063_m1 | FAM | 5′-CACTGGCTGTGGATGGTGTTGTGTT-3′ | Vcan | versican | Mus musculus | NM_172955.1 NM_001134474.1 NM_001134475.1 NM_019389.2 NM_001081249.1 D28599.1 D32040.1 D16263.1 BC021652.1 AK014525.1 AK034871.1 BC096495.1 AK135324.1 AK163927.1 AK165069.1 |
Mm00478484_m1 | FAM | 5′-GTCCTACACAGGAGCACTAAATCAA-3′ | Ptprz1 (Pcan) | protein tyrosine phosphatase, receptor type Z, polypeptide 1 (Phosphacan) | Mus musculus | NM_001081306.1 AJ133130.1 AK081698.1 BC157965.1 BC151071.1 |
Mm01179833_m1 | FAM | 5′-AAGGAGGTGCTCGTAGCCGTGATCG-3′ | Sdc3 | syndecan 3 | Mus musculus | NM_011520.3 BC054795.1 AK129153.1 BC062093.1 AK150120.1 AK155127.1 |
Mm99999915_g1 | FAM | 5′-GGTGTGAACGGATTTGGCCGTATTG-3′ | Gapdh | glyceraldehyde-3-phosphate dehydrogenase | Mus musculus | NM_008084.2 M32599.1 BC082592.1 BC083079.1 BC083080.1 BC083065.1 BC083149.1 BC085315.1 BC085274.1 BC085275.1 AK191938.1 AK192040.1 AK201736.1 BC091768.1 BC092252.1 BC092264.1 BC092294.1 BC093508.1 BU5 |
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Nadanaka, S.; Miyata, S.; Yaqiang, B.; Tamura, J.-i.; Habuchi, O.; Kitagawa, H. Reconsideration of the Semaphorin-3A Binding Motif Found in Chondroitin Sulfate Using Galnac4s-6st-Knockout Mice. Biomolecules 2020, 10, 1499. https://doi.org/10.3390/biom10111499
Nadanaka S, Miyata S, Yaqiang B, Tamura J-i, Habuchi O, Kitagawa H. Reconsideration of the Semaphorin-3A Binding Motif Found in Chondroitin Sulfate Using Galnac4s-6st-Knockout Mice. Biomolecules. 2020; 10(11):1499. https://doi.org/10.3390/biom10111499
Chicago/Turabian StyleNadanaka, Satomi, Shinji Miyata, Bai Yaqiang, Jun-ichi Tamura, Osami Habuchi, and Hiroshi Kitagawa. 2020. "Reconsideration of the Semaphorin-3A Binding Motif Found in Chondroitin Sulfate Using Galnac4s-6st-Knockout Mice" Biomolecules 10, no. 11: 1499. https://doi.org/10.3390/biom10111499
APA StyleNadanaka, S., Miyata, S., Yaqiang, B., Tamura, J. -i., Habuchi, O., & Kitagawa, H. (2020). Reconsideration of the Semaphorin-3A Binding Motif Found in Chondroitin Sulfate Using Galnac4s-6st-Knockout Mice. Biomolecules, 10(11), 1499. https://doi.org/10.3390/biom10111499