Cloning and Functional Analysis of the VfRR17 Gene from tung tree (Vernicia fordii)
Abstract
:1. Introduction
2. Results
2.1. Cloning and Sequence Analysis of the VfRR17
2.2. Structural Analysis of the Protein Encoded by the VfRR17
2.3. Analysis of Conserved Structural Domains and Phosphosite Prediction of VfRR17 Protein
2.4. Phylogenetic Relationships of VfRR17 Proteins
2.5. Expression Pattern and Subcellular Localization of VfRR17
2.6. VfRR17 Responds to Low Concentrations of 6-BA and Affects Flowering Time, Inflorescence Elongation, and Fruit Pod Numbers
3. Materials and Methods
3.1. Plant Materials
3.2. Expression Pattern of VfRR17 in Different Plant Tissues
3.3. Bioinformatics Analysis of the VfRR17
3.4. Cloning and Analysis of VfRR17
3.5. Subcellular Localization Analysis of VfRR17
3.6. Heterologous Expression of the VfRR17
4. Discussion
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Villar, L.; Lienqueo, I.; Llanes, A.; Rojas, P.; Perez, J.; Correa, F.; Sagredo, B.; Masciarelli, O.; Luna, V.; Almada, R. Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing). PLoS ONE 2020, 15, 0230110. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Wu, G.L.; Zhu, Z.J.; Qiu, Q.; Fan, X.M.; Yuan, D.-Y. Transcriptome Analysis Reveals the Regulatory Networks of Cytokinin in Promoting Floral Feminization in Castanea henryi. Int. J. Mol. Sci. 2022, 23, 6389. [Google Scholar] [CrossRef] [PubMed]
- Luo, Y.; Pan, B.-Z.; Li, L.; Yang, C.-X.; Xu, Z.-F. Developmental basis for flower sex determination and effects of cytokinin on sex determination in Plukenetia volubilis (Euphorbiaceae). Plant. Reprod. 2020, 33, 21–34. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zuiga-Mayo, V.M.; Baos-Bayardo, C.R.; Díaz-Ramírez, D.; Marsch-Martínez, N.; Folter, S.D. Conserved and novel responses to cytokinin treatments during flower and fruit development in Brassica napus and Arabidopsis thaliana. Sci. Rep. 2018, 8. [Google Scholar] [CrossRef] [Green Version]
- Hwang, I.; Sheen, J. Two-component circuitry in Arabidopsis cytokinin signal transduction. Nature 2001. [Google Scholar] [CrossRef]
- Rashotte, A.M.; Carson, S.D.; To, J.P.; Kieber, J.J. Expression profiling of cytokinin action in Arabidopsis. Plant. Physiol. 2003, 132, 1998–2011. [Google Scholar] [CrossRef] [Green Version]
- To, J.P.; Haberer, G.; Ferreira, F.J.; Deruere, J.; Mason, M.G.; Schaller, G.E.; Alonso, J.M.; Ecker, J.R.; Kieber, J.J. Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant. Cell. 2004, 16, 658–671. [Google Scholar] [CrossRef] [Green Version]
- D’Agostino, I.B.; Deruère, J.; Kieber, J.J. Characterization of the response of the Arabidopsis response regulator gene family to cytokinin. Plant. Physiol. 2000, 4. [Google Scholar] [CrossRef] [Green Version]
- Dong, J.L.; Park, J.Y.; Ku, S.J.; Ha, Y.M.; Kim, S.; Kim, M.; Kim, O.J. Genomics. Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7 (ARR7) overexpression in cytokinin response. Mol. Genet. 2007. [Google Scholar] [CrossRef]
- Takatoshi, K.; Hisami, Y.; Shusei, S.; Tomohiko, K.; Satoshi, T.; Takafumi, Y.; Takeshi, M. The Type-A Response Regulator, ARR15, Acts as a Negative Regulator in the Cytokinin-Mediated Signal Transduction in Arabidopsis thaliana. Plant. Cell. Physiol. 2003, 868–874. [Google Scholar] [CrossRef] [Green Version]
- Leibfried, A.; To, J.; Busch, W.; Stehling, S.; Kehle, A.; Demar, M.; Kieber, J.J.; Lohmann, J.U. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 2005, 438, 1172–1175. [Google Scholar] [CrossRef]
- Shi, Y.; Tian, S.; Hou, L.; Huang, X.; Zhang, X.; Guo, H.; Yang, S. Ethylene signaling negatively regulates freezing tolerance by repressing expression of CBF and type-A ARR genes in Arabidopsis. Plant. Cell. 2012, 24, 2578–2595. [Google Scholar] [CrossRef] [Green Version]
- Gao, B.; Fan, L.; Li, X.; Yang, H.; Liu, F.; Wang, L.; Xi, L.; Ma, N.; Zhao, L. RcRR1, a Rosa canina type-A response regulator gene, is involved in cytokinin-modulated rhizoid organogenesis. PLoS ONE 2013, 8, e72914. [Google Scholar] [CrossRef] [Green Version]
- Jin, J.; Nan, Y.K.; Kim, S.; Na, Y.K.; Kim, J. A subset of cytokinin two-component signaling system plays a role in cold temperature stress response in Arabidopsis. J. Biol. Chem. 2010, 285. [Google Scholar] [CrossRef] [Green Version]
- Leite Montalvão, A.P.; Kersten, B.; Kim, G.; Fladung, M.; Müller, N.A. ARR17 controls dioecy in Populus by repressing B-class MADS-box gene expression. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 2022, 377, 20210217. [Google Scholar] [CrossRef]
- Xiao, T. Status and Suggestion on Development of Vernicia fordii. Nonwood For. Res. 2006, 24, 3. [Google Scholar] [CrossRef]
- Li, W.; Dong, M.; Cao, X.; Wu, H.; Shang, Y.; Huang, H.; Zhang, H.; Zhang, L. Trees. Structure; Function. Flower biology and ontogeny of the tung tree (Vernicia fordiiHemsl.). Trees 2020, 34. [Google Scholar] [CrossRef]
- Mao, Y. The Floral Development and Sex Determination Mechanism of Vernicia fordii; University of Science and Technology of China: Hefei, China, 2017. [Google Scholar]
- Akagi, T.; Henry, I.M.; Ohtani, H.; Morimoto, T.; Beppu, K.; Kataoka, I.; Tao, R. A Y-encoded suppressor of feminization arose via lineage-specific duplication of a cytokinin response regulator in kiwifruit. Plant. Cell. 2018, 30, 780–795. [Google Scholar] [CrossRef]
- Kim, J. Phosphorylation of A-Type ARR to function as negative regulator of cytokinin signal transduction. Plant. Signal. Behav. 2008, 3, 348–350. [Google Scholar] [CrossRef] [Green Version]
- To, J.P.; Deruere, J.; Maxwell, B.B.; Morris, V.F.; Hutchison, C.E.; Ferreira, F.J.; Schaller, G.E.; Kieber, J.J. Cytokinin regulates type-A Arabidopsis response regulator activity and protein stability via two-component phosphorelay. Plant. Cell. 2007, 19, 3901–3914. [Google Scholar] [CrossRef] [Green Version]
- Melnikova, N.V.; Kudryavtseva, A.V.; Borkhert, E.V.; Pushkova, E.N.; Fedorova, M.S.; Snezhkina, A.V.; Krasnov, G.S.; Dmitriev, A.A. Sex-specific polymorphism of MET1 and ARR17 genes in Populus × sibirica. Biochimie 2019, 162, 26–32. [Google Scholar] [CrossRef] [PubMed]
- Galperin, M.Y. A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts. BMC Microbiol. 2005, 5. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Klos, D.; Dusěk, M.; Samolóvá, E.; Zatloukal, M.; Nožková, V.R.; Nesnas, N.; Plačková, L.; Koprna, R.; Spίsěk, Z.k.; Vylίčilová, H. New Water-Soluble Cytokinin Derivatives and Their Beneficial Impact on Barley Yield and Photosynthesis. J. Agric. Food Chem. 2022, 70, 7288–7301. [Google Scholar] [CrossRef] [PubMed]
- Geng, X.C.; Zhang, C.; Wei, L.D.; Lin, K.; Xu, Z.F. Genome-wide identification and expression analysis of cytokinin response regulator (RR) genes in the woody plant Jatropha curcas and functional analysis of JcRR12 in Arabidopsis. Int. J. Mol. Sci. 2022, 23, 11388. [Google Scholar] [CrossRef] [PubMed]
- Pan, B.Z.; Chen, M.S.; Ni, J.; Xu, Z.F. Transcriptome of the inflorescence meristems of the biofuel plant Jatropha curcas treated with cytokinin. BMC Genom. 2014, 15, 1–21. [Google Scholar] [CrossRef] [Green Version]
- Allem, A.C.; Mendes, R.A.; Salomão, A.; Burle, M.L. The primary gene pool of cassava (Manihot esculenta Crantz subspecies esculenta, Euphorbiaceae). Euphytica 2001, 120, 127–132. [Google Scholar] [CrossRef]
- Fregene, M.A.; Vargas, J.; Ikea, J.; Angel, F.; Tohme, J.; Asiedu, R.A.; Akoroda, M.O.; Roca, W.M. Variability of chloroplast DNA and nuclear ribosomal DNA in cassava (Manihot esculenta Crantz) and its wild relatives. Theor. Appl. Genet. 1994, 89, 719–727. [Google Scholar] [CrossRef]
- Fang, S.G.; Hu, K.; Wang, W.; Chen, S.; Zhou, B.; Zhiguo. Foliar and seed application of plant growth regulators affects cotton yield by altering leaf physiology and floral bud carbohydrate accumulation. Field Crops Res. 2019, 231, 105–114. [Google Scholar] [CrossRef]
- Chen, M.S.; Zhao, M.L.; Wang, G.J.; He, H.Y.; Bai, X.; Pan, B.Z.; Fu, Q.T.; Tao, Y.B.; Tang, M.Y.; Martínez Herrera, J. Transcriptome analysis of two inflorescence branching mutants reveals cytokinin is an important regulator in controlling inflorescence architecture in the woody plant Jatropha curcas. BMC Plant. Biol. 2019, 19, 1–16. [Google Scholar] [CrossRef] [Green Version]
- Lin, S.-Y. Exogenous gibberellic acid and cytokinin effects on budbreak, flowering, and yield of blackberry grown under subtropical climatic conditions. HortScience 2020, 55, 1938–1945. [Google Scholar] [CrossRef]
- Fan, S.; Wang, J.; Lei, C.; Gao, C.; Yang, Y.; Li, Y.; An, N.; Zhang, D.; Han, M. Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple. BMC Plant. Biol. 2018, 18, 173. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zheng, C.; Zhu, Y.; Wang, C.; Guo, T. Wheat Grain Yield Increase in Response to Pre-Anthesis Foliar Application of 6-Benzylaminopurine Is Dependent on Floret Development. PLoS ONE 2016, 11, e0156627. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Liu, M.; Li, W.; Zhao, G.; Fan, X.; Long, H.; Fan, Y.; Shi, M.; Tan, X.; Zhang, L.J.F.i.G. New insights of salicylic acid into stamen abortion of female flowers in tung tree (Vernicia fordii). Front. Genet. 2019, 10, 316. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zhang, L. The Regulatory Mechanisms of VaWRKY12 and VaWRKY14 Inresponse to Low Temperature or Drought Stress in Amur Grape; Wuhan Botanical Garden, Chinese Academy of Sciences: Wuhan, China, 2018. [Google Scholar]
- Liu, W.; Yi, Y.; Zhuang, J.; Ge, C.; Cao, Y.; Zhang, L.; Liu, M. Genome-wide identification and transcriptional profiling of the basic helix-loop-helix gene family in tung tree (Vernicia fordii). PeerJ. 2022, 10, e13981. [Google Scholar] [CrossRef]
- Kim, T.E.; Kim, S.K.; Han, T.J.; Lee, J.S.; Chang, S.C. ABA and polyamines act independently in primary leaves of cold-stressed tomato (Lycopersicon esculentum). Physiol. Plant. 2002, 115, 370–376. [Google Scholar] [CrossRef]
- Wang, S.; Yang, S.; He, D.; Yi, Y.; Fu, Y.; Yin, D.; Zhao, H.; Xiao, C. Exogenous 6-benzyladenine treatment alleviates cold stress in early japonica rice at booting in Northeast China. Agron. J. 2022, 114, 2905–2919. [Google Scholar] [CrossRef]
- Wang, G.-F.; Qin, H.-Y.; Sun, D.; Fan, S.-T.; Yang, Y.-M.; Wang, Z.-X.; Xu, P.-L.; Zhao, Y.; Liu, Y.-X.; Ai, J. Haploid plant regeneration from hardy kiwifruit (Actinidia arguta Planch.) anther culture. Plant. Cell. Tissue Organ. Cult. 2018, 134, 15–28. [Google Scholar] [CrossRef]
- Li, Y.; Zhang, D.; Zhang, L.; Zuo, X.; Fan, S.; Zhang, X.; Shalmani, A.; Han, M. Identification and expression analysis of cytokinin response-regulator genes during floral induction in apple (Malus domestica Borkh). Plant. Growth Regul. 2017, 83, 455–464. [Google Scholar] [CrossRef]
- Zúñiga-Mayo, V.M.; Reyes-Olalde, J.I.; Marsch-Martinez, N.; de Folter, S. Cytokinin treatments affect the apical-basal patterning of the Arabidopsis gynoecium and resemble the effects of polar auxin transport inhibition. Front. Plant. Sci. 2014, 5, 191. [Google Scholar] [CrossRef] [Green Version]
- Wen, Z.; Guo, W.; Li, J.; Lin, H.; He, C.; Liu, Y.; Zhang, Q.; Liu, W. Comparative Transcriptomic Analysis of Vernalization- and Cytokinin-Induced Floral Transition in Dendrobium nobile. Sci. Rep. 2017, 7, 45748. [Google Scholar] [CrossRef] [Green Version]
- Cheng, Z.J.; Zhu, S.S.; Gao, X.Q.; Zhang, X.S. Cytokinin and auxin regulates WUS induction and inflorescence regeneration in vitro in Arabidopsis. Plant. Cell. Rep. 2010, 29, 927–933. [Google Scholar] [CrossRef]
- Zhang, K.; Novak, O.; Wei, Z.; Gou, M.; Zhang, X.; Yu, Y.; Yang, H.; Cai, Y.; Strnad, M.; Liu, C.-J. Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins. Nat. Commun. 2014, 5, 3274. [Google Scholar] [CrossRef] [Green Version]
- Hirose, N.; Makita, N.; Kojima, M.; Kamada-Nobusada, T.; Sakakibara, H. Overexpression of a Type-A Response Regulator Alters Rice Morphology and Cytokinin Metabolism. Plant. Cell. Physiol. 2007, 48, 523–539. [Google Scholar] [CrossRef] [Green Version]
- Kochankov, V.G.; Milyaeva, E.L.; Zhyvukhina, E.A.; Kh, C.M. Effect of 6-benzylaminopurine on stem formation and flower bud initiation in rudbeckia bicolor plants of different ages under non-inductive conditions. Acta Hortic. 1989, 251, 25–34. [Google Scholar] [CrossRef]
- Nonokawa, K.; Kokubun, M.; Nakajima, T.; Nakamura, T.; Yoshida, R. Roles of Auxin and Cytokinin in Soybean Pod Setting. Plant. Prod. Sci. 2007, 10, 199–206. [Google Scholar] [CrossRef] [Green Version]
- Kambhampati, S.; Kurepin, L.V.; Kisiala, A.B.; Bruce, K.E.; Cober, E.R.; Morrison, M.J.; Emery, R.J.N. Yield associated traits correlate with cytokinin profiles in developing pods and seeds of field-grown soybean cultivars. Field Crops Res. 2017, 214, 175–184. [Google Scholar] [CrossRef]
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Liao, L.-Y.; He, Z.-Q.; Zhang, L. Cloning and Functional Analysis of the VfRR17 Gene from tung tree (Vernicia fordii). Plants 2023, 12, 2474. https://doi.org/10.3390/plants12132474
Liao L-Y, He Z-Q, Zhang L. Cloning and Functional Analysis of the VfRR17 Gene from tung tree (Vernicia fordii). Plants. 2023; 12(13):2474. https://doi.org/10.3390/plants12132474
Chicago/Turabian StyleLiao, Li-Yu, Zhang-Qi He, and Lin Zhang. 2023. "Cloning and Functional Analysis of the VfRR17 Gene from tung tree (Vernicia fordii)" Plants 12, no. 13: 2474. https://doi.org/10.3390/plants12132474
APA StyleLiao, L. -Y., He, Z. -Q., & Zhang, L. (2023). Cloning and Functional Analysis of the VfRR17 Gene from tung tree (Vernicia fordii). Plants, 12(13), 2474. https://doi.org/10.3390/plants12132474