Innovative Approach to Detecting Autism Spectrum Disorder Using Explainable Features and Smart Web Application
Abstract
:1. Introduction
- Despite extensive research on ASD, this study is the first to identify relevant features through ANOVA and Chi-Square analyses and to examine possible correlations before fitting the proposed DMLRS model, enhancing prediction accuracy.
- Secondary data were collected using a mobile application for research, incorporating ten research questions (A1–A10) and information on variables including age, jaundice history, ethnicity, sex, prior app usage, family relationships, ASD presence in family members, and the dependent variable: autism classification.
- We developed an innovative autism prediction model integrating XAI with ML and DM algorithms, achieving higher predictive performance. A comparative analysis with state-of-the-art models is also provided.
- Finally, this study implemented the proposed model in a web application featuring a user-friendly interface to support individuals and healthcare providers in assessing autism.
2. Literature Review
Research Gap and Questions
- Does employing a novel DMLRS technique—one that integrates prominent ML algorithms with DM techniques—improve the accuracy of ASD detection compared to existing methods?
- What are the most effective methodologies in ML, data mining, and web application development for accurately identifying autism?
3. Proposed Methodology
Algorithm 1 DMLRS Model |
|
3.1. Autism Spectrum Dataset and Preprocessing
3.2. Autism Mobile App for Data Collection
3.3. Exploratory Data Analysis
3.4. Data-Mining Techniques—Feature Selection
3.4.1. Bivariate Analysis
- Chi-Squared Test: This assessment examines categorical values to determine if a significant correlation exists between two categorical variables [34]. The Chi-Square test, a statistical method, evaluates the presence of a meaningful relationship between these variables [35]. The Chi-Square formula is as follows:Here, denotes the Chi-Square statistic, O signifies the observed value, and E denotes the expected value.Data for Chi-Square tests are typically presented in a cross-tabulation format, with each row representing a category of one variable and each column representing a category of another. It is essential that both variables originate from the same population and are categorical, such as class (Yes/No), sex (Male/Female), jaundice (Yes/No), ethnicity, and relation (Yes/No).
- ANOVA: The Analysis of Variance (ANOVA) technique is used to evaluate mean differences between two groups for numerical variables. In this section, the ANOVA test was applied to continuous columns (age, Q-Chat square). The ANOVA test shows that the response variable varied according to the level of the categorical variable (or class). This hypothesis was as follows:H0:The two variables are independent.H1:The two variables relate to each other.
3.4.2. Correlation Analysis
3.4.3. Outlier Detection
3.5. Applied ML Methods
3.5.1. LR with SHAP Analysis
- : Represents the jth predictor variable;
- : Denotes the coefficient corresponding to the jth predictor variable.
3.5.2. Extreme Gradient Boosting
- Obj is the overall objective function;
- n is the number of training instances;
- is the loss function that measures the difference between the actual target and the predicted target ;
- K is the number of weak learners (trees) in the ensemble;
- is the regularization term that penalizes complex models.
3.5.3. Deep Models with Residual Connections and Ensemble (DMRCE)
3.5.4. FAST and Lightweight Automated ML (FLAML)
- AutoML represents the automated ML process.
- Model denotes the ML model selected from a pool of potential models.
- Models refer to the set of potential models that can be considered during the AutoML process.
- represents the training dataset.
- represents the validation dataset.
- represents the loss function used to evaluate the performance of the model on the validation dataset.
3.6. Hyperparameter Tuning
4. Results and Discussions
4.1. Software and Hardware Configuration
4.2. Results of Applied Evaluation Methods
4.3. K-Fold Cross-Validation
4.4. Computational Complexity by Runtime
4.5. Comparison with Previous Studies
4.6. Web-Based Autism Application System
4.7. Limitations of Study
5. Conclusions and Future Directions
Future Work
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
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Ref. | Problem Statement | Research Objective | Main Contribution | Experimental Result |
---|---|---|---|---|
[13] | Analysis and identification of ASD. | Early diagnosis of ASD. | Detecting ASD and analyzing ASD issues. | The Neural Network-based model may identify ASD instead of a typical DM classifier. |
[14] | Behavioral research on ASDs. | Incorporate an intelligent DM algorithm into an existing diagnostic tool. | Surpasses the majority of previous studies. | SVM (Support Vector Machine) is used to generate ASD classification models. |
[10] | Autism detection based on rule induction. | To increase the efficiency of ASD identification. | Rule-based representations of automatic classification systems. | Rule-based superior algorithms that offer higher sensitivity rates. |
[15] | Evaluation of ASD DM classification. | Create a different model with a greater capacity for early predicted ASD. | Using Autism Questions (AQs) to create models. | LR achieved the maximum accuracy using the Chi-Square approach. |
[16] | ASD diagnosis employing optimal techniques. | Expedite autism diagnosis. | Predict a person’s ASD symptoms and identify the most effective model. | Provide good experimental results. |
[17] | Examine Q-Chat for early autism screening. | Investigation of the accuracy and reliability of the quantitative autism screening tool for toddlers, called Q-Chat. | Demonstrates exceptional accuracy, showcasing the tool’s robust performance and cross-cultural reliability. | SVM proved to be an effective classification method. |
[18] | Screening for ASD using machine learning models. | Prediction of ASD to facilitate diagnosis and subsequent treatment. | Prediction of ASDs. | On the adult autism dataset, a neural network has the highest accuracy. |
[19] | Models that are based on DM for the early detection of ASD. | Early detection of ASD. | Introduced a DM-based model that may be applied to the early detection of ASD. | SVM gives a better result. |
[20] | Applying DM techniques to predict ASD. | Develop and use a model for the early prediction of autism. | Proposed a DM approach to conducting early prediction of ASD. | Greatest accuracy among other study disciplines. |
[21] | Predicting autistic features by replacing conventional scoring systems. | Designing an accurate screening system for autism. | Increasing the screening process’s accuracy. | CNN is the best algorithm for detecting ASD features compared to DM methods. |
[22] | ASD detection. | Identify the most important characteristics and automate the diagnostic process aim of improving diagnosis. | Analyzing the features of ASD datasets and finding correlations. | Neural network classifier beats all other benchmark DM algorithms. |
[23] | Identification of ASD in children. | Assess if a child is prone to ASD in its earliest stages, streamlining the process of diagnosis. | Proposed a predictive model with the highest accuracy to identify ASD in children. | LR provides the greatest accuracy. |
No | Variable Name | Variable Type | Variable Description |
---|---|---|---|
Independent Variables | |||
1 | Case No | Numeric | The participant’s ID number. |
2 | A1 | Binary (0, 1) | Is your child responsive when you call their name? |
3 | A2 | Binary | How comfortable are you in establishing eye contact with your child? |
4 | A3 | Binary | Does your child use pointing gestures to express their desires or needs? |
5 | A4 | Binary | Does your child engage in pointing gestures to express shared interests with you? |
6 | A5 | Binary | Does your child engage in pretend play, such as taking care of dolls or pretending to talk on a toy phone? |
7 | A6 | Binary | Does your child track or follow your gaze direction? |
8 | A7 | Binary | When you or someone else in the family is visibly upset, does your child display signs of wanting to offer comfort or consolation? |
9 | A8 | Binary | Would you describe your child’s first words as typical? |
10 | A9 | Binary | Does your child use simple gestures? |
11 | A10 | Binary | Does your child stare blankly or without reason? |
12 | Q-Chat Score | Numeric | The Q-CHAT score is a screening measure based on a 10-item (A1–A10) screening tool for autism in toddlers (18–24 months). Higher scores indicate a greater likelihood of autism, suggesting the need for further evaluation. |
13 | Age | Number | Age in months. |
14 | Sex | String | Gender. |
15 | Ethnicity | String | Ethnicities. |
16 | Jaundice | Boolean (Yes or No) | Jaundiced at birth. |
17 | Family member with ASD | Boolean | A family member has an ASD. |
18 | Relation | String | Relation to the child (e.g., Parent, Self, etc.). |
19 | Used app before | Boolean | Whether the participant has used this app before. |
Dependent Variables | |||
20 | Class | Boolean | Participant classification as ASD or not ASD. |
Variable | Case_No 1 | Case_No 2 | Case_No 3 | Case_No 4 | Case_No 5 |
---|---|---|---|---|---|
A1 | 0 | 1 | 1 | 1 | 1 |
A2 | 0 | 1 | 0 | 1 | 1 |
A3 | 0 | 0 | 0 | 1 | 0 |
A4 | 0 | 0 | 0 | 1 | 1 |
A5 | 0 | 0 | 0 | 1 | 1 |
A6 | 0 | 1 | 0 | 1 | 1 |
A7 | 1 | 1 | 1 | 1 | 1 |
A8 | 1 | 0 | 1 | 1 | 1 |
A9 | 0 | 0 | 0 | 1 | 1 |
A10 | 1 | 0 | 1 | 1 | 1 |
Q-Chat_score | 3 | 4 | 4 | 10 | 9 |
Age (month) | 18.605 | 13.829 | 14.679 | 61.035 | 14.256 |
Sex | f | m | m | m | f |
Ethnicity | Middle Eastern (ME) | White (WE) European | ME | Hispanic | WE |
Jaundice | yes | yes | yes | no | no |
Family mem ASD. | no | no | no | no | yes |
Relation | family member (FM) | FM | FM | FM | FM |
Used app before | no | no | no | no | no |
Class | No | Yes | Yes | Yes | Yes |
Categorical Variables | p Value |
---|---|
Sex | 0.0003848 *** |
Ethnicity | 1.834 × *** |
Jaundice | 0.0224 *** |
Family_mem_with_ASD | 1 |
Relation | 0.526 |
A1 | 2.2 × *** |
A2 | 2.2 × *** |
A3 | 2.2 × *** |
A4 | 2.2 × *** |
A5 | 2.2 × *** |
A6 | 2.2 × *** |
A7 | 2.2 × *** |
A8 | 2.2 × *** |
A9 | 0.89932 |
A10 | 0.73447 |
Continuous Variables | p Value |
---|---|
Age | 0.03165 *** |
Q-Chat-score | 0.34444 |
Classifier | Model Architecture and Parameters |
---|---|
LR | family = binomial, split ratio = 80:20, list = FALSE, probabilities > 0.5 |
FLAML | estimator_list = XGBoost, log_file_name = autism.log, time_budget = 600 |
DMRCE | verbose = 1, min_lr = 0.00001, batch_size = 20, epochs = 100, activation = relu |
XGBoost | learning_rate = 0.002, objective = binary:logistic, eval_metric = auc, max_depth = 10, alpha = 0.51, gamma = 1.92, reg_lambda = 11.40, colsample_bytree = 0.70, subsample = 0.83, min_child_weight = 2.55 |
Predict\Actual | Have Autism | Not Autism |
---|---|---|
ASD predicted | True Positive (TP) | False Negative (FN) |
ASD not predicted | False Positive (FP) | True Negative (TN) |
Variable Name | Estimate | Odds Ratio (95% CI) | p Value | Relationship |
---|---|---|---|---|
Intercept | 0.9593803 | 2.610079 | 2 × *** | Significant |
A1 | −0.0611398 | 0.9406917 | 0.022261 * | Significant |
A2 | −0.0372514 | 0.9634339 | 0.166254 | Insignificant |
A3 | 0.0436941 | 1.044663 | 0.097515 | Insignificant |
A4 | −0.0562393 | 0.9453129 | 0.033022 * | Significant |
A5 | 0.0887948 | 1.092856 | 0.000686 *** | Significant |
A6 | −0.0815689 | 0.9216692 | 0.001979 ** | Significant |
A7 | −0.1228839 | 0.8843663 | 1.33 × *** | Significant |
A8 | −0.0343828 | 0.9662016 | 0.173490 | Insignificant |
Age | −0.0006173 | 0.9993829 | 0.322985 | Insignificant |
Sex (m) | 0.0105284 | 1.010584 | 0.562028 | Insignificant |
Jaundice (yes) | −0.0584768 | 0.9432001 | 0.001709 ** | Significant |
Model | Accuracy (%) | Precision (%) | Recall (%) | F1 (%) |
---|---|---|---|---|
DMLRS | 99 | 99 | 98 | 97 |
FLAML | 94 | 94 | 93 | 93 |
DMRCE | 88 | 64 | 73 | 68 |
XGBoost | 85 | 76 | 80 | 78 |
Method | K-Fold | Accuracy | Standard Deviation |
---|---|---|---|
DMLRS | 10 | 0.98 | 0.0049 |
FLAML | 10 | 0.91 | 0.0042 |
DMRCE | 10 | 0.85 | 0.89 |
XGBoost | 10 | 0.0081 | 0.0037 |
Method | Runtime Computations (Seconds) |
---|---|
DMLRS | 0.41 |
FLAML | 0.50 |
DMRCE | 0.65 |
XGBoost | 0.62 |
Ref | Methods | Tools | Dataset | Accuracy | Sensitivity | Specificity |
---|---|---|---|---|---|---|
[43] | SVM, LG, Tree | Weka | 29 attributes, 627 samples | 97.70% | 99% | 94% |
[45] | Naive Bayes, S.O.M., Neural Fuzzy, LVQ, Neural Network, K-means, Fuzzy C Mean | Developed | 16 attributes, 100 samples | 98% | 95.26% | 96.16% |
[46] | SVM, LR, DT, Probabilistic variations | R, Weka | 28 attributes, 4540 samples | 97.27% | 98% | 89.39% |
[47] | SVM, LR, DT | Scikit-Learn | 65 attributes, 2925 samples | 97.16% | 97.22% | 97.40% |
[48] | SVM | Weka | 65 attributes, 1726 samples | 95.17% | 87.95% | 96.20% |
[2] | NB, BG, CART, C4.5, KS, SVM, RT | Weka | 4 datasets, 18, 23, 23, 23 attributes (1054, 509, 248, 1118 samples, respectively) | 97.77% | 97.66% | 97.16% |
[49] | Decision Tree, Random Forest | R | 20 attributes, 1054 samples | 91.74% | 99% | 92.39% |
[50] | NB, SVM, KNN | Weka | 20 attributes, 1054 samples | 98% | 92.39% | 92.11% |
Our work | LR, Auto ML, DMRCE, XGBoost | R, Python | 20 attributes, 1054 samples | 99% | 98% | 99% |
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Rony, M.A.T.; Johora, F.T.; Thalji, N.; Raza, A.; Fitriyani, N.L.; Syafrudin, M.; Lee, S.W. Innovative Approach to Detecting Autism Spectrum Disorder Using Explainable Features and Smart Web Application. Mathematics 2024, 12, 3515. https://doi.org/10.3390/math12223515
Rony MAT, Johora FT, Thalji N, Raza A, Fitriyani NL, Syafrudin M, Lee SW. Innovative Approach to Detecting Autism Spectrum Disorder Using Explainable Features and Smart Web Application. Mathematics. 2024; 12(22):3515. https://doi.org/10.3390/math12223515
Chicago/Turabian StyleRony, Mohammad Abu Tareq, Fatama Tuz Johora, Nisrean Thalji, Ali Raza, Norma Latif Fitriyani, Muhammad Syafrudin, and Seung Won Lee. 2024. "Innovative Approach to Detecting Autism Spectrum Disorder Using Explainable Features and Smart Web Application" Mathematics 12, no. 22: 3515. https://doi.org/10.3390/math12223515
APA StyleRony, M. A. T., Johora, F. T., Thalji, N., Raza, A., Fitriyani, N. L., Syafrudin, M., & Lee, S. W. (2024). Innovative Approach to Detecting Autism Spectrum Disorder Using Explainable Features and Smart Web Application. Mathematics, 12(22), 3515. https://doi.org/10.3390/math12223515