Next Article in Journal
Differential Oral Microbiota and Serum Cytokine Signatures in Age-Grouped Patients with Marfan Syndrome
Previous Article in Journal
HIF-1α Promotes Luteinization via NDRG1 Induction in the Human Ovary
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
This is an early access version, the complete PDF, HTML, and XML versions will be available soon.
Article

Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches

Department of Respiratory Medicine, the First Affiliated Hospital of Harbin Medical University, Harbin 150001, China
*
Author to whom correspondence should be addressed.
Biomedicines 2025, 13(2), 331; https://doi.org/10.3390/biomedicines13020331
Submission received: 23 December 2024 / Revised: 28 January 2025 / Accepted: 30 January 2025 / Published: 31 January 2025
(This article belongs to the Section Molecular Genetics and Genetic Diseases)

Abstract

Objective: This study aims to explore the role of angiogenesis-related genes in chronic lung diseases (ILD and COPD) using bioinformatics methods, with the goal of identifying novel therapeutic targets to slow disease progression and prevent its deterioration into fibrosis or pulmonary artery hypertension. Methods: The research methods encompassed differential analysis, WGCNA (Weighted Gene Co-expression Network Analysis), and multiple machine learning approaches to screen for key genes. Gene Set Enrichment Analysis (GSEA), Gene Ontology (GO), and the Kyoto Encyclopedia of Genes and Genomes (KEGG) were utilized to assess related biological functions and pathways. Additionally, immune cell infiltration was analyzed to evaluate the immune status of the disease and the correlation between genes and immunity. Results: COPD and ILD are closely associated with pathways related to angiogenesis, immune responses, and others, with differential genes in both groups linked to inflammation-related signaling pathways. The study established a chronic lung disease-related gene set comprising 171 genes and further screened out 21 genes related to angiogenesis. Ultimately, four key genes—COL10A1, EDN1, MMP1, and RRAS—were identified through machine learning methods. These four genes are closely related to angiogenesis and immune processes, and clustering analysis based on them can reflect different disease states and variations in immune cell infiltration. Conclusions: COL10A1, EDN1, MMP1, and RRAS represent potential therapeutic targets for slowing the progression of chronic lung diseases and preventing their deterioration. Furthermore, monocytes exhibited consistent infiltration patterns across disease and control groups, as well as among different subgroups, suggesting their potential significant role in the development of chronic lung diseases.
Keywords: chronic lung diseases; angiogenesis-related genes; bioinformatics methods; key gene screening; therapeutic targets chronic lung diseases; angiogenesis-related genes; bioinformatics methods; key gene screening; therapeutic targets

Share and Cite

MDPI and ACS Style

Liu, L.; Wang, M.; Yu, S. Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches. Biomedicines 2025, 13, 331. https://doi.org/10.3390/biomedicines13020331

AMA Style

Liu L, Wang M, Yu S. Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches. Biomedicines. 2025; 13(2):331. https://doi.org/10.3390/biomedicines13020331

Chicago/Turabian Style

Liu, Lu, Man Wang, and Shihuan Yu. 2025. "Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches" Biomedicines 13, no. 2: 331. https://doi.org/10.3390/biomedicines13020331

APA Style

Liu, L., Wang, M., & Yu, S. (2025). Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches. Biomedicines, 13(2), 331. https://doi.org/10.3390/biomedicines13020331

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop