Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sampling and Morphological Description
2.2. DNA Extraction, PCR, and Sequencing
2.3. Sampling for Phylogenetic Analyses
2.4. Phylogenetic Analyses
2.5. Species-Specific ITS Markers
3. Results
3.1. Phylogenetic Analyses
3.2. ITS Types and Characteristic Polymorphisms
3.3. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Specimen | ITS | tef1 | Geographic Origin |
---|---|---|---|---|
A. abruptibulbus | ZRL20150970 | MK617880 | MK614388 | Yunnan, China |
A. abruptibulbus | ZRL20161250 | MK617909 | MK614417 | Jilin, China |
A. albiceps | ZRL20170538 T | MK617917 | MK614424 | Inner Mongolia, China |
A. alboumbonatus | ZRL20171140 T | MK617943 | MK614449 | Heilongjiang, China |
A. arvensis | LAPAG450 T | KF114474 | KX198047 | Spain |
A. augustus | CA590 | JF797193 | MK614368 | France |
A. catenocystis | ZRL20170624 T | MK617925 | MK614432 | Inner Mongolia, China |
A. cf. essettei | ZRL2012026 | KT951363 | KT951630 | Yunnan, China |
A. crocodilinus | HSU7280 T | NR144989 | – | California, USA |
A. cruciquercorum | RWK2121 | KJ859120 | – | California, USA |
A. cruciquercorum | RWK2124 | KJ859127 | – | California, USA |
A. didymus | RWK2235 T | NR144990 | – | New Mexico, USA |
A. diospyros | BOS722 T | NR144993 | – | Wisconsin, USA |
A. dolichocaulis | ZRL20170590 T | MK617923 | MK614430 | Inner Mongolia, China |
A. eburneocanus | H7528 T | JF495062 | – | Australia |
A. essettei | LAPAG676 | KJ548131 | – | Savona, Italy |
A. essettei | ZRL20120642 | MK617870 | MK614379 | Tibet, China |
A. fissuratus | ZRL20170745 | MK617935 | MK614441 | Inner Mongolia, China |
A. flocculosipes | ZRL2012105 | KT951365 | KT951618 | Yunnan, China |
A. flocculosipes | ZRL3028 T | JN664954 | – | Doi Inthanon, Thailand |
A. gemellatus | ZRL2012631 | KT951380 | KT951623 | Tibet, China |
A. gemellatus | RWK2047 T | KJ859080 | – | Utah, USA |
A. greuteri | LAPAG399 | MK617859 | – | Palencia, Spain |
A. greuteri | PAL-GR57140 T | KF114473 | – | Emilia-Romagna, Italy |
A. guizhouensis | ZRL20160420 | MK617906 | MK614414 | Heilongjiang, China |
A. guizhouensis | GY127800 T | KJ755658 | – | Guizhou, China |
A. hingganensis | ZRL20151825 | MK617898 | MK614406 | Inner Mongolia, China |
A. hingganensis | ZRL20151696 T | MK617882 | MK614390 | Heilongjiang, China |
A. inapertus | HS1 | KJ859088 | – | California, USA |
A. indistinctus | AH44504 T | KF114475 | – | Burgos, Spain |
A. julius | ZRL20162195 | MK617915 | MK614422 | Gansu, China |
A. julius | RWK2267 T | NR144991 | – | New Mexico, USA |
A. longistipes | GY124459 | KJ755642 | – | Guizhou, China |
A. longistipes | GY124427 T | KJ755643 | – | Guizhou, China |
A. luteopileus | ZRL20120589 | MK617868 | MK614377 | Tibet, China |
A. luteopileus | ZRL2012604 T | KT951375 | KT951620 | Tibet, China |
A. macrocarpus | LAPAG525 | MK617860 | MK614369 | Bohemia, Czech Republic |
A. macrochlamys | ARB1353 | KY704305 | – | Georgia, USA |
A. macrochlamys | CA1110 * | KY704307 | – | Veracruz, Mexico |
A. macrochlamys | IE903 | ON332803 | – | Veracruz, Mexico |
A. macrochlamys | IE904 | ON332804 | – | Veracruz, Mexico |
A. macrochlamys | IE965 | KY114573 | – | Veracruz, Mexico |
A. macrochlamys | IE973 | KY114574 | – | Veracruz, Mexico |
A. macrochlamys | IE4012 | ON332805 | ON376243 | Veracruz, Mexico |
A. macrochlamys | JBSD126480 | ON332793 | ON376239 | Puerto Plata, Dominican Republic |
A. macrochlamys | JBSD126482 | ON332794 | – | Puerto Plata, Dominican Republic |
A. macrochlamys | JBSD126483 | ON332795 | ON376240 | Puerto Plata, Dominican Republic |
A. macrochlamys | JBSD126484 | ON332796 | – | Puerto Plata, Dominican Republic |
A. macrochlamys | JBSD130773 | ON332797 | ON376241 | Puerto Plata, Dominican Republic |
A. macrochlamys | JBSD130774 | ON332798 | ON376242 | Puerto Plata, Dominican Republic |
A. macrochlamys | LD201901 | ON332799 | ON376244 | Veracruz, Mexico |
A. macrochlamys | LD201927 | ON332800 | – | Veracruz, Mexico |
A. macrochlamys | LD201934 | ON332801 | – | Veracruz, Mexico |
A. macrochlamys | LD201938 | ON332802 | ON376245 | Veracruz, Mexico |
A. macrolepis | LAPAG409 | KJ548128 | – | Burgos, Spain |
A. megacarpus | QL20170178 T | MK617861 | MK614371 | Gansu, China |
A. megalocarpus | Hao0608 T | KJ755638 | – | Yunnan, China |
A. mesocarpus | RWK2240 T | KJ859094 | – | Colorado, USA |
A. moronii | RWK2045 T | NR144992 | – | Utah, USA |
A. nanaugustus | MW17 | KJ859117 | – | Pennsylvania, USA |
A. nanaugustus | RWK2002 | KJ859116 | – | Pennsylvania, USA |
A. ornatipes | MCVE29263 T | MG664795 | – | Italy |
A. osecanus | LAPAG90 | KJ548133 | – | Madrid, Spain |
A. pyricystis | ZRL20161248 | MK617908 | MK614416 | Jilin, China |
A. pyricystis | ZRL20161191 T | MK617907 | MK614415 | Jilin, China |
A. reducibulbus | RWK2105 | KJ859130 | – | Pennsylvania, USA |
A. reducibulbus | RWK2077 T | NR144994 | – | Pennsylvania, USA |
A. sandianus | RWK2260 T | NR144995 | – | New Mexico, USA |
A. silvicolisimilis | BP85081 T | KF114472 | – | Budapest, Hungary |
A. sp. | AMZ | AY484687 | – | Hungary |
A. sp. | SHY2011073117 | KT951407 | KT951622 | Yunnan, China |
A. sp. | Thoen6951 | JN204433 | – | Senegal |
A. sp. | Thoen7297 | JF514542 | – | Senegal |
A. sp. | TL1644 | JF495060 | – | Australia |
A. sp. | TL1650 | JF495061 | – | Australia |
A. sp. | ZRL2012608 | KT951377 | KT951627 | Tibet, China |
A. sp. | ZRL2012630 | KT951379 | KT951621 | Tibet, China |
A. sp. | ZRL20160099 | MK617903 | MK614411 | Heilongjiang, China |
A. sp. | ZRL20160157 | MK617904 | MK614412 | Heilongjiang, China |
A. sp. | ZRL20162213 | MK617916 | MK614423 | Beijing, China |
A. sp. | ZRL20170661 | MK617927 | MK614434 | Inner Mongolia, China |
A. sp. | ZRL20170828 | MK617941 | MK614447 | Heilongjiang, China |
A. sp. | ZRL20170893 | MK617942 | MK614448 | Heilongjiang, China |
A. subantarcticus | GAL9419 T | DQ232642 | – | New Zealand |
A. subrufescens | ZRL2012722 | KT951383 | KT951632 | Yunnan, China |
A. subrufescens | ZRL20140153 | MK617874 | MK614382 | Yunnan, China |
A. subrufescens ** | K(W)234316 | ON561779 | – | Martinique |
A. subrufescens | LD201903 | ON332806 | ON376236 | Veracruz, Mexico |
A. subrufescens | LAPAM11 | MF511113 | ON376237 | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM12 | MF511114 | ON376238 | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM13 | MF511115 | – | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM37 | MF511128 | – | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM77 | ON332807 | ON568203 | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM78 | ON332808 | – | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM100 | ON332809 | – | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM101 | ON332810 | – | Puerto Plata, Dominican Republic |
A. subrufescens | LAPAM103 | ON332811 | – | Puerto Plata, Dominican Republic |
A. subtilipes | MFLU120992 | KP705079 | – | Thailand |
A. subtilipes | LD201201 T | KP705078 | MK614370 | Thailand |
A. subumbonatus | ZRL2012030 T | KT951364 | KT951628 | Yunnan, China |
A. summensis | RWK2048 | KJ859105 | – | Utah, USA |
A. summensis | RWK2243 | KJ859104 | – | Colorado, USA |
A. sylvicola | LAPAG242 | KJ548130 | – | Burgos, Spain |
A. sylvicola | ZRL20151792 | MK617894 | MK614402 | Inner Mongolia, China |
A. edmondoi (outgroup) | LAPAG412 | KT951326 | KT951590 | Segovia, Spain |
Sample | Country | ITS | Position | GenBank | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Type | 39 | 122 | 130 | 145 | 146 | 166 | 196 | 200 | 210 | 269 | 466 | 475 | 494 | 518 | |||
IE965 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | KY114573 |
IE973 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | KY114574 |
CA1110 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | KY704307 |
IE903 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332803 |
IE904 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332804 |
IE4012 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332805 |
LD201901 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332799 |
LD201927 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332800 |
LD201934 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332801 |
LD201938 | Mexico | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332802 |
JBSD126480 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332793 |
JBSD126482 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332794 |
JBSD126483 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332795 |
JBSD126484 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332796 |
JBSD130773 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332797 |
JBSD130774 | Dominican | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | ON332798 |
ARB1353 | USA | MM | - | G | A | A | T | G | G | C | G | G | A | T | A | G | KY704305 |
F2285 | Martinique | AA | T | A | A | G | A | A | A | T | A | G | A | T | Y | T | JF797201 |
LAPAM13 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | T | T | MF511115 |
LAPAM37 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | C | T | MF511128 |
LAPAM77 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | C | T | ON332807 |
LAPAM78 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | Y | T | ON332808 |
LAPAM100 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | Y | T | ON332809 |
LAPAM101 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | C | T | ON332810 |
LAPAM103 | Dominican | AA | T | A | A | G | A | A | A | T | A | G | A | T | C | T | ON332811 |
CA603A | Mexico | A | T | A | A | G | A | A | A | T | A | G | A | T | C | T | KY704306 1 |
WC837-S43 | Brazil | A | T | A | A | G | A | A | A | T | A | G | A | T | C | T | KJ541797 |
CA864A | France | A | T | A | A | G | A | A | A | T | A | G | A | T | T | T | KU557349 1 |
CA487-C5 | France | A | T | A | A | G | A | A | A | T | A | G | A | T | C | T | KU557352 |
CA603B | Mexico | B | - | G | G | A | T | A | A | C | A | G | A | T | C | T | KY704306 1 |
L0341732 | UK | BB | - | G | G | A | T | A | A | C | A | G | A | T | C | T | AY818649 |
IE913 | Mexico | BB | - | G | G | A | T | A | A | C | A | G | A | T | C | T | KY114572 |
LAPAM12 | Dominican | BB | - | G | G | A | T | A | A | C | A | G | A | T | C | T | MF511114 |
WC837-S04 | Brazil | B | - | G | G | A | T | A | A | C | A | G | A | T | C | T | KJ541796 |
CA864B | France | B | - | G | G | A | T | A | A | C | A | G | A | T | C | T | KU557349 1 |
CA487-C6 | France | B | - | G | G | A | T | A | A | C | A | G | A | T | C | T | KU557353 |
CA487-C2 | France | C | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KU557351 |
GY128883 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ755634 |
GY133048 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ755635 |
GY121118 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ755633 |
GY128956 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ755632 |
XHW1614 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ755636 |
ZRL2036 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KU557345 |
ZRL2134 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KU557346 |
ZRL20130601 | China | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | MK617873 |
VM098 | Iran | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KT983412 |
NT001 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KU557347 |
CA935 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KU557348 |
CA918 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | KJ541798 |
NTF67 | Thailand | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | JF514529 |
DEH513 | Hawaii | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | AY818646 |
DEH1073 | Hawaii | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | AY818647 |
KRP070 | Hawaii | CC | - | G | G | A | T | A | A | C | A | A | C | - | C | T | AY818648 |
CA487 | France | ABC | T/- | R | R | R | W | A | A | Y | A | R | M | T/- | C | T | KU557351 2 KU557352 2 KU557353 2 |
CA603 | Mexico | AB | T/- | R | R | R | W | A | A | Y | A | G | A | T | C | T | KY704306 |
LD201903 | Mexico | AB | T | R | R | A | T | A | A | Y | A | G | A | T | C | T | ON332806 |
LAPAM11 | Dominican | AB | T | R | R | R | W | A | A | Y | A | G | A | T | Y | T | MF511113 |
WC837 | Brazil | AB | T/- | R | R | R | W | A | A | Y | A | G | A | T | C | T | KU557350 |
CA864 | France | AB | T/- | R | R | R | W | A | A | Y | A | G | A | T | Y | T | KU557349 |
Fragment 10 | USA | (AB) | T/- | R | R | R | W | A | A | Y | A | G | A | T | C | T | EU071699 |
SBRF | USA | (AB) | T/- | R | R | R | W | A | A | Y | A | G | A | T | C | T | AY818656 |
ZRL2012722 | China | (aB) | - | A | G | A | T | A | A | C | A | G | A | - | C | T | KT951383 |
ZRL20140153 | China | (aB) | - | A | G | A | T | A | A | C | A | G | A | - | C | T | MK617874 |
978 | Brazil | (aB) | - | G | G | R | T | A | A | C | A | G | A | T | C | T | AY818650 |
GY129365 | China | (bC) | - | G | G | A | T | A | A | C | A | R | M | - | C | T | KJ755631 |
ZRL20140275 | China | (bC) | - | G | G | A | T | A | A | C | A | G | A | - | C | T | MK617876 |
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Medel-Ortiz, R.; Garibay-Orijel, R.; Argüelles-Moyao, A.; Mata, G.; Kerrigan, R.W.; Bessette, A.E.; Geml, J.; Angelini, C.; Parra, L.A.; Chen, J. Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens. J. Fungi 2022, 8, 664. https://doi.org/10.3390/jof8070664
Medel-Ortiz R, Garibay-Orijel R, Argüelles-Moyao A, Mata G, Kerrigan RW, Bessette AE, Geml J, Angelini C, Parra LA, Chen J. Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens. Journal of Fungi. 2022; 8(7):664. https://doi.org/10.3390/jof8070664
Chicago/Turabian StyleMedel-Ortiz, Rosario, Roberto Garibay-Orijel, Andrés Argüelles-Moyao, Gerardo Mata, Richard W. Kerrigan, Alan E. Bessette, József Geml, Claudio Angelini, Luis A. Parra, and Jie Chen. 2022. "Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens" Journal of Fungi 8, no. 7: 664. https://doi.org/10.3390/jof8070664
APA StyleMedel-Ortiz, R., Garibay-Orijel, R., Argüelles-Moyao, A., Mata, G., Kerrigan, R. W., Bessette, A. E., Geml, J., Angelini, C., Parra, L. A., & Chen, J. (2022). Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens. Journal of Fungi, 8(7), 664. https://doi.org/10.3390/jof8070664