First Molecular Phylogenetic Identification and Report of Pseudocercospora cannabina Causing Leaf Spot Disease on Cannabis sativa in Thailand
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection and Isolation
2.2. DNA Extraction and PCR Amplification and Sequencing
2.3. Phylogenetic Analyses
2.4. Pathogenicity Test
3. Results
3.1. Taxonomy
Taxonomic Description
3.2. Pathogenicity Test
3.3. Phylogeny
4. Discussion
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Culture Collection Number | ITS | act | tef | rpb2 |
---|---|---|---|---|---|
Pseudocercospora abeliae | MUCC1674 * | LC599330 | LC599407 | LC599448 | LC599587 |
Ps. aeschynomenicola | COAD 1972 * | KT290146 | KT313501 | KT290200 | NA |
Ps. aleuritis | MAFF237174 * | LC599331 | LC599408 | LC599449 | LC599588 |
Ps. angolensis | CBS 149.53 * | JQ324975 | JQ325011 | JQ324988 | NA |
Ps. basiramifera | CBS 111072 * | GU269661 | GU320368 | DQ211677 | NA |
Ps. cannabina | SDBR-CMU372 * | OR101673 | OR344083 | NA | OR344085 |
Ps. cannabina | SDBR-CMU373 | OR101674 | OR344084 | NA | OR344086 |
Ps. casuarinae | CBS 128218 * | HQ599603 | LC599413 | LC599454 | NA |
Ps. ceratoniae | CBS 147386 = CPC19998 * | LC599335 | LC599414 | LC599455 | LC599592 |
Ps. cercidicola | MAFF237791 * | GU269671 | GU320377 | GU384388 | KX462618 |
Ps. cercidis-chinensis | CBS 132109 = CPC14481 * | GU269670 | GU320376 | GU384387 | LC599593 |
Ps. chamaecristae | CPC 25228 = COAD 1973 * | KT290147 | KT313502 | KT290201 | NA |
Ps. chiangmaiensis | CBS 123244 * | EU882113 | KF903544 | KF903177 | NA |
Ps. chionanthi-retusi | NCHUP L605 * | KX462585 | KX462552 | KX462671 | KX462620 |
Ps. cordiana | CBS 114685 * | AF362054 | GU320387 | GU384398 | NA |
Ps. delonicicola | MUCC2869 * | LC599341 | LC599421 | LC599463 | LC599601 |
Ps. diplusodonii | CPC 25179 = COAD 1476 * | KT290135 | KT313490 | KT290189 | NA |
Ps. eriobotryae | MUCC1007 * | KX462589 | KX462557 | KX462676 | KX462628 |
Ps. eriobotryicola | NCHUP L1601 * | KX462590 | KX462558 | KX462677 | KX462629 |
Ps. ershadii | CBS 136114 = CCTU1206 * | KM452867 | KM452844 | KM452889 | MN786459 |
Ps. eumusae | CBS 114824 * | EU514238 | LFZN0100 0053 | LFZN0100 0037 | NA |
Ps. euphorbiacearum | COAD 1537 * | KT290145 | KT313500 | KT290199 | NA |
Ps. exilis | COAD 1501* | KT290139 | KT313494 | KT290193 | NA |
Ps. fijiensis | CBS 120258 = CIRAD 86 * | EU514248 | NW006921533 | NW006921532 | NW006921535 |
Ps. fukuokaensis | MAFF237768 * | GU269714 | GU320418 | GU384430 | KX462632 |
Ps. glochidionis | MAFF237000 * | LC599348 | LC599428 | LC599470 | LC599608 |
Ps. haiweiensis | CBS 131584 * | GU269803 | GU320506 | GU384514 | KX462634 |
Ps. imazekii | MUCC1668 * | KX462596 | KX462564 | KX462683 | KX462638 |
Ps. kobayashiana | MAFF236999 * | LC511998 | LC512004 | LC515780 | LC515791 |
Ps. liquidambaricola | MUCC1664 * | LC599352 | LC599432 | LC599474 | LC599611 |
Ps. maetaengensis | MFLUCC 14-0011 * | GU188048 | NA | NA | NA |
Ps. mangifericola | BRIP 52776b * | GU188048 | NA | NA | NA |
Ps. marginalis | CBS 131582 * | GU269794 | GU320495 | GU384504 | NA |
Ps. musae | CBS 116634 * | GU269747 | GU320449 | GU384459 | NA |
Ps. nandinae | MAFF239633 * | KX462600 | KX462568 | KX462687 | KX462645 |
Ps. neriicola | CBS 138010 * | KJ869165 | KJ869231 | KJ869240 | KX462647 |
Ps. norchiensis | CBS 120738 * | EF394859 | GU320455 | GU384464 | KX462648 |
Ps. pini-densiflorae | MUCC534 * | LC599354 | LC599434 | LC599478 | LC599615 |
Ps. piperis | COAD 1111 | JX875062 | NA | JX896123 | NA |
Ps. plumeriifolii | COAD 1498 * | KT290138 | KT313493 | KT290192 | NA |
Ps. pothomorphes | COAD 1450 * | KT290131 | KT313486 | KT290185 | NA |
Ps. proiphydis | BRIP58545 * | KM055430 | NA | KM055437 | NA |
Ps. pruni-grayanae | MUCC1715 * | LC599356 | NA | LC599481 | LC599618 |
Ps. pseudomusae | CBS 147147 = CPC37270* | MW063423 | MW070772 | MW071091 | MW070919 |
Ps. pseudomyrticola | CBS 145554 * | MK876405 | MK876461 | MK876499 | MK876490 |
Ps. punicae | MAFF236998 | KX462606 | KX462573 | KX462692 | KX462655 |
Ps. pyracanthigena | CBS 131589 * | GU269766 | GU320469 | GU384478 | NA |
Ps. ravenalicola | CBS 122468 * | GU269810 | GU320513 | GU384521 | NA |
Ps. rhamnellae | CBS 131590 * | GU269795 | GU320496 | GU384505 | NA |
Ps. rhapisicola | MAFF305042 * | LC599357 | LC599436 | LC599483 | LC599620 |
Ps. rigidae | COAD 1472 * | KT290134 | KT313489 | KT290188 | NA |
Ps. sawadae | MAFF239714 | LC599359 | LC599438 | LC599485 | LC599622 |
Ps. schizolobii | CBS 120029 * | KF251322 | KF253628 | KF253269 | NA |
Ps. sennae-multijugae | COAD 1519 * | KT290142 | KT313497 | KT290196 | NA |
Ps. serpocaulonicola | COAD 1866 * | KT037525 | KT037607 | KT037485 | NA |
Ps. solani-pseudocapsicicola | COAD 1974 * | KT290148 | KT313503 | KT290202 | NA |
Ps. struthanthi | COAD 1512 * | KT290141 | KT313496 | KT290195 | NA |
Ps. tabernaemontanae | CPC 19198 * | LC599363 | LC599442 | NA | LC599625 |
Ps. tinea | NCHUP L1603 * | KX462608 | KX462577 | KX462696 | KX462660 |
Ps. trinidadensis | CPC 26082 = COAD1756 * | KT290157 | NA | KT290210 | NA |
Ps. tumulosa | CBS 121158 * | DQ530217 | NA | NA | NA |
Ps. violamaculans | MUCC1660 * | KX462610 | KX462579 | KX462698 | KX462662 |
Ps. vitis | CPC 11595 | GU269829 | GU320533 | GU384541 | KX462663 |
Ps. vitis | CBS 128211 * | LC599366 | LC599445 | LC599492 | LC599627 |
Trochophora simplex | CBS 124744 | GU269872 | GU320568 | GU384580 | KX462666 |
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Harishchandra, D.L.; Haituk, S.; Withee, P.; Tamakaew, N.; Nokum, N.; Kanchanomai, C.; Pusadee, T.; Nakashima, C.; Cheewangkoon, R. First Molecular Phylogenetic Identification and Report of Pseudocercospora cannabina Causing Leaf Spot Disease on Cannabis sativa in Thailand. Horticulturae 2023, 9, 1261. https://doi.org/10.3390/horticulturae9121261
Harishchandra DL, Haituk S, Withee P, Tamakaew N, Nokum N, Kanchanomai C, Pusadee T, Nakashima C, Cheewangkoon R. First Molecular Phylogenetic Identification and Report of Pseudocercospora cannabina Causing Leaf Spot Disease on Cannabis sativa in Thailand. Horticulturae. 2023; 9(12):1261. https://doi.org/10.3390/horticulturae9121261
Chicago/Turabian StyleHarishchandra, Dulanjalee Lakmali, Sukanya Haituk, Patchareeya Withee, Nisachon Tamakaew, Nittaya Nokum, Chaorai Kanchanomai, Tonapha Pusadee, Chiharu Nakashima, and Ratchadawan Cheewangkoon. 2023. "First Molecular Phylogenetic Identification and Report of Pseudocercospora cannabina Causing Leaf Spot Disease on Cannabis sativa in Thailand" Horticulturae 9, no. 12: 1261. https://doi.org/10.3390/horticulturae9121261
APA StyleHarishchandra, D. L., Haituk, S., Withee, P., Tamakaew, N., Nokum, N., Kanchanomai, C., Pusadee, T., Nakashima, C., & Cheewangkoon, R. (2023). First Molecular Phylogenetic Identification and Report of Pseudocercospora cannabina Causing Leaf Spot Disease on Cannabis sativa in Thailand. Horticulturae, 9(12), 1261. https://doi.org/10.3390/horticulturae9121261