Bioactive Peptides and Their Antibiotic Activity

A special issue of Antibiotics (ISSN 2079-6382). This special issue belongs to the section "Antimicrobial Peptides".

Deadline for manuscript submissions: 1 December 2024 | Viewed by 6303

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Associate Professor, School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, CEP, Ribeirao Preto 14040-903, SP, Brazil
Interests: bioactive peptides; cancer; natural peptides; molecular biology; proteases and proteomic
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Special Issue Information

Dear Colleagues,

The polypeptide chains of peptides with antimicrobial activity generally have fifty or fewer amino acid residues. Depending on the composition of the amino acids that make up the polypeptide chain, antimicrobial peptides can have cationic, anionic, and/or aromatic charged in addition to their characteristic size and conformation. [1]. Antimicrobial peptides (AMPs) are conserved biomolecules, and are part of the defense systems of many organisms, from prokaryotes to multicellular organisms such as humans [2]. AMPs are produced by organisms as a defense mechanism against pathogenic microbes. Initial studies on defense peptides identified defensins, cecropins, retropins and cathelicidins, which have different structures and bioactivities [3]. Antimicrobial peptides can be classified according to their source (animal, plant, microbial, insect, amphibian, aquatic), and by their structure (α-helix, β-sheet, both α-helix and β-sheet, linear). They are also classified based on species rich in amino acids (especially Gly, Arg, Pro, His and Trp), and depending on their activity (e.g., antimicrobial, antiviral, antiparasitic, antifungal, anti-inflammatory and anticancer) [4]. The first reported AMP was gramicidin, isolated from Bacillus brevis in 1939. Defensin, another AMP, was isolated from rabbit leukocytes. Since the 1960s, there has been a great interest in these peptides, and more than 5000 AMPs have been reported [1]. Thus, peptides are considered promising molecules not only for application as antimicrobial therapy, but also in immunomodulatory, anticancer, antioxidant and other applications [5]. Currently, many in silico analysis methods have been helping to target peptides for antimicrobial applications. Molecular biology techniques associated with bioinformatics are also providing good results in obtaining more effective AMPs.

References

[1] Cardoso, P., Glossop, H., Meikle, T. G., Aburto-Medina, A., Conn, C. E., Sarojini, V., Valery, C. Molecular engineering of antimicrobial peptides: microbial targets, peptide motifs and translation opportunities. Biophysical Reviews, 2021, vol. 13, p.35–69, https://doi.org/10.1007/s12551-021-00784-y.

[2] Ebenhan, T., Gheysens, O., Kruger, H. G., Zeevaart, J. R., Sathekge, M. M. Antimicrobial peptides: their role as infection-selective tracers for molecular imaging. Biomed Research International, 2014, Article ID, 867381, p.1-15. https://doi.org/10.1155/2014/867381.

[3] Fjell, C. D., Hiss, J. A., Hancock, R. E. W., Schneider, G. Designing antimicrobial peptides: form follows function. Nature Reviews Drug Discovery, Vol. 11, January 2012, p.37-51. https://doi.org/10.1038/nrd3591.

[4] Huan, Y., Kong, Q., Mou, H., Yi, H. Antimicrobial Peptides: Classification, Design, Application and Research Progress in Multiple Fields. Frontiers in Microbiology, 2020, vol. 11 October 2020, p. 1-21, ID Article 582779, https://doi.org/10.3389/fmicb.2020.582779.

[5] Torres, M. D. T., Sothiselvam, S., Lu, T. K. and de la Fuente-Nunez C. Peptide Design Principles for Antimicrobial Applications. Journal of Molecular Biology, 2019, Vol. 431, p. 3547–3567, https://doi.org/10.1016/j.jmb.2018.12.015.

Dr. Hamilton Cabral
Guest Editor

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Keywords

  • database peptides
  • therapeutic agents
  • peptide design
  • antimicrobial peptides
  • antibiotic resistance
  • therapeutic drugs

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Published Papers (3 papers)

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20 pages, 6008 KiB  
Article
Peptidome Profiling of Bubalus bubalis Urine and Assessment of Its Antimicrobial Activity against Mastitis-Causing Pathogens
by Rohit Kumar, Nikunj Tyagi, Anju Nagpal, Jai Kumar Kaushik, Ashok Kumar Mohanty and Sudarshan Kumar
Antibiotics 2024, 13(4), 299; https://doi.org/10.3390/antibiotics13040299 - 26 Mar 2024
Cited by 1 | Viewed by 1740
Abstract
Urinary proteins have been studied quite exhaustively in the past, however, the small sized peptides have remained neglected for a long time in dairy cattle. These peptides are the products of systemic protein turnover, which are excreted out of the body and hence [...] Read more.
Urinary proteins have been studied quite exhaustively in the past, however, the small sized peptides have remained neglected for a long time in dairy cattle. These peptides are the products of systemic protein turnover, which are excreted out of the body and hence can serve as an important biomarker for various pathophysiologies. These peptides in other species of bovine have been reported to possess several bioactive properties. To investigate the urinary peptides in buffalo and simultaneously their bioactivities, we generated a peptidome profile from the urine of Murrah Buffaloes (n = 10). Urine samples were processed using <10 kDa MWCO filter and filtrate obtained was used for peptide extraction using Solid Phase Extraction (SPE). The nLC-MS/MS of the aqueous phase from ten animals resulted in the identification of 8165 peptides originating from 6041 parent proteins. We further analyzed these peptide sequences to identify bioactive peptides and classify them into anti-cancerous, anti-hypertensive, anti-microbial, and anti-inflammatory groups with a special emphasis on antimicrobial properties. With this in mind, we simultaneously conducted experiments to evaluate the antimicrobial properties of urinary aqueous extract on three pathogenic bacterial strains: S. aureus, E. coli, and S. agalactiae. The urinary peptides observed in the study are the result of the activity of possibly 76 proteases. The GO of these proteases showed the significant enrichment of the antibacterial peptide production. The total urinary peptide showed antimicrobial activity against the aforementioned pathogenic bacterial strains with no significant inhibitory effects against a buffalo mammary epithelial cell line. Just like our previous study in cows, the present study suggests the prime role of the antimicrobial peptides in the maintenance of the sterility of the urinary tract in buffalo by virtue of their amino acid composition. Full article
(This article belongs to the Special Issue Bioactive Peptides and Their Antibiotic Activity)
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18 pages, 3998 KiB  
Article
Expression of the Antimicrobial Peptide SE-33-A2P, a Modified Analog of Cathelicidin, and an Analysis of Its Properties
by Vagif Gasanov, Ekaterina Vorotelyak and Andrey Vasiliev
Antibiotics 2024, 13(2), 190; https://doi.org/10.3390/antibiotics13020190 - 16 Feb 2024
Cited by 1 | Viewed by 1757
Abstract
In this study, we developed a method for the expression of the antimicrobial peptide SE-33-A2P in E. coli bacterial cells. The SE-33-A2P peptide consists of A2P and SE-33 peptides and is a retro analog of cathelicidin possessing antimicrobial activity against both Gram-positive and [...] Read more.
In this study, we developed a method for the expression of the antimicrobial peptide SE-33-A2P in E. coli bacterial cells. The SE-33-A2P peptide consists of A2P and SE-33 peptides and is a retro analog of cathelicidin possessing antimicrobial activity against both Gram-positive and Gram-negative bacteria. Furthermore, the A2P peptide is a self-cleaving peptide. For an efficient expression of the SE-33-A2P peptide, a gene encoding several repetitive sequences of the SE-33 peptide separated by A2P sequences was created. The gene was cloned into a plasmid, with which E. coli cells were transformed. An induction of the product expression was carried out by IPTG after the cell culture gained high density. The inducible expression product, due to the properties of the A2P peptide, was cleaved in the cell into SE-33-A2P peptides. As the next step, the SE-33-A2P peptide was purified using filtration and chromatography. Its activity against both Gram-positive and Gram-negative bacteria, including antibiotic-resistant bacteria, was proved. The developed approach for obtaining a prokaryotic system for the expression of a highly active antimicrobial peptide expands the opportunities for producing antimicrobial peptides via industrial methods. Full article
(This article belongs to the Special Issue Bioactive Peptides and Their Antibiotic Activity)
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28 pages, 1897 KiB  
Article
Tuning the Anthranilamide Peptidomimetic Design to Selectively Target Planktonic Bacteria and Biofilm
by Rajesh Kuppusamy, Muhammad Yasir, Tsz Tin Yu, Florida Voli, Orazio Vittorio, Michael J. Miller, Peter Lewis, David StC Black, Mark Willcox and Naresh Kumar
Antibiotics 2023, 12(3), 585; https://doi.org/10.3390/antibiotics12030585 - 15 Mar 2023
Cited by 3 | Viewed by 2177
Abstract
There is a pressing need to develop new antimicrobials to help combat the increase in antibiotic resistance that is occurring worldwide. In the current research, short amphiphilic antibacterial and antibiofilm agents were produced by tuning the hydrophobic and cationic groups of anthranilamide peptidomimetics. [...] Read more.
There is a pressing need to develop new antimicrobials to help combat the increase in antibiotic resistance that is occurring worldwide. In the current research, short amphiphilic antibacterial and antibiofilm agents were produced by tuning the hydrophobic and cationic groups of anthranilamide peptidomimetics. The attachment of a lysine cationic group at the tail position increased activity against E. coli by >16-fold (from >125 μM to 15.6 μM) and greatly reduced cytotoxicity against mammalian cells (from ≤20 μM to ≥150 μM). These compounds showed significant disruption of preformed biofilms of S. aureus at micromolar concentrations. Full article
(This article belongs to the Special Issue Bioactive Peptides and Their Antibiotic Activity)
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