1. Introduction
Lately, our perception on sustainable development has changed. In the past, sustainable development was defined as developing the quality of life as we live surrounded by our supporting ecosystems. Now the concept of ‘sustainability’ is emerging to include concomitantly environmental, economic and social equity, enforcing changes to the traditional way consumers and businesses operate and relate to each other. Society has to keep the environment clean by all means while being responsible in consuming and conserving it. The more society recognizes the value of the clean environment, the demand for effective cleanup techniques increases [
1,
2]. An uncontaminated environment that includes clean air, water, land and energy, is important for human survival, conducting business and making wealth. To this end, scientists, alongside companies and societal needs, make great efforts to improve water quality [
2], important for preserving resources and public health. Attention is being paid to environmental sustainability through the development of new green technologies and products, i.e., rainwater management and permeable pavements [
3], that aim mainly to reduce pollution from contaminants (for example, BTEX compounds released into a water body that have toxic effects on biota [
4] from anthropogenic activities such as fuels, oils and fats, etc. [
3]). The replacement of chemical surfactants from the biologically produced ones is a literal case of the situation.
Surfactants (synthetic surfactants and biosurfactants) are amphiphilic molecules with hydrophilic and hydrophobic moieties that participate at surface- or interface-related properties [
5,
6], reducing surface and interfacial tension [
7,
8,
9]. The repulsive forces between two dissimilar phases are reduced via surfactant addition, and the two phases can mix and interact more easily [
10]. Currently produced surfactants are mainly chemically derived from petroleum and are usually toxic and difficult to break down through biodegradation [
5,
7,
10]. Their use in the environment results often in an extra source of contamination [
11]. Due to their toxic potential, these agents have been increasingly restricted [
12]. On the contrary, biosurfactants (BSs) are biodegradable amphiphilic microbial molecules with low toxicity; ability to function in extreme conditions of pH, temperature and salinity with greater selectivity; lower critical micelle concentration (CMC) [
5,
7,
10]; resistance to extreme conditions of acidity and basicity; ionic strength and anti-inflammatory and antimicrobial potential [
13] and can be produced using as substrates, renewable sources, industrial by-products and wastes [
5,
7,
10]. BSs are produced as secondary metabolites [
8,
14] by a variety of microorganisms such as bacteria (most exploited microorganism), yeast and fungi [
5,
6,
7,
15]. They are also produced by plants and animals at slower production rates [
14]. BSs are categorized based on their chemical structures in glycolipids, lipoproteins, phospholipids and polymers [
6]. The BS activity depends on the BS concentration in the medium. Above the CMC, the BS molecules form micelles, bilayers and vesicles to reduce surface and interfacial tension. Effective BSs can reduce the water–air surface tension from 72 to 30 mN/m [
6,
10]. Their application range is wide and present in removal of heavy metals, nanotechnology [
5,
15], petroleum recovery, bioremediation, food industry, detergents, textiles, cosmetics, agricultural industry and pharmaceutics [
5,
15,
16]. Their presence in pharmacological activities vary due to their antibacterial, antifungal, antiviral [
14,
17], anti-mycoplasma [
17], anticancer and antiadhesive [
14] properties and their biocontrol of plant pathogens [
17]. Their most desirable characteristics are their roles in emulsification, foam formation, detergency dispersion [
5,
15] and wetting. When used in bioremediation the main advantages are the efficiency, safety, and the lack of risk to contaminate the environment [
18]. Different groups of biosurfactants have diverse roles in the process in which they are produced, such as the surface area and bioavailability increase of hydrophobic substrates, heavy metal binding, bacteria pathogenesis and biofilm formation [
13].
The main obstacles in the large-scale production and commercialization of BSs are the complicated recovery process [
5], the high costs of raw materials, the slow growth rates of microorganisms on the substrate, the generally low yields and the final product purification from substrate impurities [
15,
19]. Purification accounts for 60% of the overall production cost [
20]. Efficient BS isolation and purification methods could render their production more economically feasible [
10]. Parameters that play a key role in BS-producing cultivations are the isolation of a BS-producing microorganism (strain or consortia) [
19], which should be nonpathogenic [
12]; the establishment of the best incubation conditions (temperature, time, nutrients, mixing); and the carbon substrate [
6]. Choosing appropriate carbon and nitrogen sources is of highest importance for efficient BS production [
7]; indeed, the type, quality and quantity of the BS production are affected and influenced by the nature of the carbon substrate [
21]. Many by-products or wastes have been used as carbon substrates for the BS production. Some of them are agro-industrial wastes, such as olive oil mill waste, and industrial wastes from animal and plant origin, such as dairy whey and animal fat [
15]. Optimized growth/production conditions could lead to more cost-effective and economically viable BS production using cheaper renewable substrates and novel, efficient multistep downstream processing methods [
22].
Previously, marine hydrocarbon-degrading consortia and strains from Elefsina Bay, Attica, Greece, were investigated for their BS production efficiency and quality [
19]. During this investigation, the isolated bacterial strains were identified and tested for their BS production under several cultivation conditions with different kinds of carbon sources as substrates. Alcanivoracaceae was the most abundant bacteria family, while
A. borkumensis SK2 was the dominant strain. This strain is one of the major players in hydrocarbon degradation and is known for its glycolipid production. It is commonly found in contaminated areas [
19] and is well-known as a standard bioemulsifier [
17]. A quite interesting result from this investigation was the fact that the
A. borkumensis SK2 strain cultivation, with heavy crude oil fractions low in sulfur (HOF-1) as carbon source, produced ~70 mg/L BS. The HOF-1 remained insoluble on the surface of the culture’s broth, and the extracted BS did not include any hydrocarbon impurities. With heavy crude oil fractions (HOF) as the carbon source, column chromatography was not necessary to purify the BS for CO impurities [
19].
HOF are high in asphaltene concentrations by-products of the oil refining industry. The low cost of this carbon source and the absence of impurities in the BS produced were the incentives to investigate this system further. In this manuscript, our main objectives were to test the BS production of A. borkumensis SK2 in a bioreactor, with HOF as the carbon source. In addition, the main questions to be addressed were (a) whether the carbon source would remain insoluble and if so, for how long? (b) What kind of bioreactor should be used? (c) Would the BS produced be without oil impurities and effective in bioremediation?
2. Materials and Methods
ONR7a medium (DSMZ 950. ONR7a medium
https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium950.pdf (accessed on 18 February 2019)) was used as cultivation medium for
Alkanivorax borkumensis SK2. The medium was sterilized in an autoclave before use. Nutrients of nitrogen and phosphorus were used and added in the form of a NP medium in the cultivations. To produce the NP medium, in 1 L distilled water (dH
2O), 72.48 g nitrogen as KNO
3 and 5.64 g phosphate as KH2PO4 (Sigma–Aldrich) were added, and the medium was sterilized in an autoclave. In each 1 L ONR7a used, 50 mL NP were added, as to have 0.05%
w/
v and 0.005%
w/
v nitrogen and phosphorus, respectively.
The carbon sources used as substrates in the cultivations were two kinds of heavy oil fractions, HOF-1 and HOF-2, which were sterilized in an autoclave. Those fractions are rich in asphaltenes, with very low solubility, and their concentrations in the cultivations were 0.5% w/v. To handle and add those substrates, they were previously warmed up. HOF-1 (sample name SRAR U-2000, Sarir, sampling Date 26 April 2010) is a petroleum residue low in sulfur from Hellenic Petroleum S.A. in Aspropirgos, and HOF-2 (sample name U31, S-007, sampling Date 27 January 2014) is a vacuum residue from Hellenic Petroleum S.A. in Elefsina Bay.
In a previous reported investigation,
Alkanivorax borkumensis SK2 strain was isolated from a bacterial consortium from Elefsina Bay. This strain is known for its glycolipid production and oil degradation ability and was used in all cultivations to produce biosurfactants [
19].
For the scaled-up BS production, a bioreactor CH 8636 Wald Switzerland of Bioengineering AG was used. The bioreactor was sterilized in an autoclave before use.
2.1. Cultivation of Biosurfactant-Producing Bacteria
The previously isolated biosurfactant-producing strain
Alcanivorax borkumensis SK2, a marine bacterial isolate, was used for the biosurfactant production [
19]. The pure strain
A. borkumensis SK2 was inoculated in 200 mL of ONR7a artificial seawater supplemented with a HOF-2 used as carbon source 0.5%
w/
v and with addition of 10 mL solution NP. The final ratio of C:N:P was equal to 100:10:1. The cultivation was incubated at 20 °C on an orbital shaker at 120 rpm for 11 days. For the culture’s maintenance, plates supplemented with Zobell Marine broth 2216 HIMEDIA (40.25 g/L) and Agar by Sigma–Aldrich Inc. (Merck KGaA, Darmstadt, Germany) (15 g/L) were used. The bacterial growth was monitored via optical density (OD) measurements.
2.2. Monitoring Biosurfactant Production
Preliminary tests were carried out (microcosm experiments) to find the most suitable incubation period for maximum biosurfactant production by A. borkumensis SK2, using HOF as substrates.
The cultivation volume was 200 mL (190 mL ONR7a + 10 mL NP), in which 1 g HOF-1 and the bacteria
A. borkumensis SK2, with initial concentration 1 × 10
7 colony forming units per mL (CFU/mL), were added. The nutrients N and P followed the ratio C:N:P equal to 100:10:1. The cultures were incubated at 20 °C and agitated at 120 rpm on an orbital shaker. This experiment took place for 30 days, and the biosurfactant concentration was estimated every 4 days. The samples taken each time had volume equal to 20 mL. The procedure that took place for the biosurfactant extraction was solvent extraction for rhamnolipids, according to the method used by Smyth et al. [
23]. The solvent used for the extraction was Ethyl acetate (Merck KGaA, Darmstadt, Germany). During this experiment, the bacteria proved to dissolve the HOF-1 into the water column after 22 days of incubation. This made us use the even heavier oil fraction (HOF-2) to reach the goal of producing BS without substrate impurities.
HOF-2 is a heavy oil fraction with even less solubility than HOF-1. The volume of the cultivations was 300 mL of ONR7a, the ‘smart carbon’ source (HOF-2) was at a percent of 0.5% (1.5 gr HOF-2), and the added nutrients followed the ratio of C:N:P equal to 100:10:1. The initial bacterial concentration of
A. borkumensis SK2 was 1 × 10
7 CFU/mL. The cultures were incubated at 20 °C, and, in an orbital shaker, agitated at 120 rpm. This experiment took place for 20 days, and the biosurfactant concentration was estimated every 5 days. The samples taken each time had volume equal to 20 mL. The procedure that took place for the biosurfactant extraction was solvent extraction for rhamnolipids, according to the method used by Smyth et al. [
23]. The solvent used for the extraction was Ethyl acetate (Merck KGaA, Darmstadt, Germany).
2.3. BS Detection—Thin Layer Chromatography
During previously reported results, detection and characterization techniques used to confirm the BS chemical composition were thin layer chromatography (TLC), Fourier transform infra-red spectrometry (FT-IR) and liquid chromatography coupled with mass spectrometry (LC–MS) [
19].
Alcanivorax borkumensis SK2 produced mostly rhamnolipids. During our current investigation, TLC was carried out to confirm rhamnolipid production. Biosurfactants produced by
Alcanivorax borkumensis SK2 were compared to a standard rhamnolipid mixture of Rha-C10-C10 and Rha-Rha-C10-C10 (R-95 RL95%, Sigma–Aldrich Inc., Merck KGaA, Darmstadt, Germany). Silica gel TLC plates were used according to the method by Smyth et al. for rhamnolipid detection. The developing solvent system was chloroform:methanol:acetic acid (6.5:1.5:0.2 v/v/v), and the visualization solvent was anthrone reagent, sulfuric acid:water:anthrone (63:25:0.125 v/v/w) [
23]. The visualized spots of each sample were compared to the standard ones. On visualization, the green colored spot nearer the point of origin corresponded to the dirhamnolipids, while the one further from the point of origin represented the monorhamnolipids [
23]. To compare the samples, the RF value was calculated. This value is equal to the distance from the origin point where the crude extract was initially placed until the point where the spot emerged, divided by the total distance the solvent made on the plate.
2.4. Bioreactor Preparation
The bioreactor was filled with 3.3 L ONR7a and sterilized in an autoclave. Solution (NP) of the nutrients KNO3 and KH2PO4 was sterilized separately and added afterward to the bioreactor. As for the carbon substrate, the HOF-2 was first sterilized and warmed up at approximately 250 °C and spread on sterilized nets with a surface of 2 × 2 cm2. The total surface of the nets placed into the bioreactor (by taking into consideration both sides of the nets) was 320 cm2 approximately. Lastly, the bacteria A. borkumensis SK2 was added to the bioreactor (cultivated separately in a beaker). Then, 50 mL of the cultivation with 2.52 × 1011 CFU (after 6 days of incubation in Zobell Marine 2216, 40.25 g/L) were centrifuged for 20 min at 7000 rpm, and the resulting pellet was cleaned with ONR7a and centrifuged again. This process took place 3 times. The pellet was diluted in a small quantity of sterilized ONR7a and added to the bioreactor. The initial concentration of bacteria in the bioreactor was 7.6 × 107 CFU/mL. The operation volume of the bioreactor was 3.3 L, the temperature was 20 °C, the air flow was 50 L/h, the dissolved oxygen was 35% and the stirring rate was 150 rpm.
2.5. Bioreactor Operation
The physicochemical parameters and the operation conditions of a bioreactor are of high importance for the production of BSs. Parameters such as temperature, stirring, kind of carbon source and nutrition concentrations have been shown to have great effect on BS production [
7]. During the bioreactor operation, the physical conditions were the following: temperature, 20 °C; mixing, 150 rpm; air flow, 50 L/h; dissolved oxygen, 35%; and total culture volume, 3.3 L.
At the first stage of the bioreactors operation, the reactor was operated as a batch reactor for 10 days. During this first period, the concentration of the biosurfactants reached its highest point. At day 10, the second stage of the bioreactors operation, as sequenced semi-batch reactor, started. At that point, 60% of the volume of the bioreactor was removed and replaced with fresh ONR7a with nutrients NP. By removing 60% of the cultivation, the concentration of the bacteria is halved, but the order of magnitude does not change. As for the carbon source, it was not removed, because it was immobilized on the nets. To estimate the concentration of the biosurfactants, three samples of 35 mL were taken and examined with solvent extraction according to Smyth et al. [
23]. The aim was to find the most suitable timeframe, in which the system of the bioreactor would reach the maximum BS concentration again. For this, samples were taken and examined after several timeframes (after 1 day, 3 days, 5 days, 6 days and 7 days of operation). Until day 6, the concentration was increasing and reached its highest value; after that, it decreased again at day 7. Sampling was performed in triplicates, and the volume of each sample was 35 mL.
2.6. Baffled Flask Test—Biosurfactant Efficiency Test
In order to measure the oil dispersion efficiency of the BS produced, they were tested by the baffled flask test (BFT) protocol, according to the US Environmental Protection Agency (EPA) approved efficiency test for screening the effectiveness of dispersant products in the laboratory [
24]. The experiment took place in room temperature approximately 20 °C. The pure biosurfactant extract is honey-like and could not be used as it was, so it was first diluted in soybean oil. Four (0%, 5%, 7.5% and 15%
w/
v) different BS concentrations were tested.
Baffled flasks were filled with 120 mL saline medium, 100 μL Iranian light crude oil and 4 μL of biosurfactant diluted in soybean oil. The Baffled flasks were stirred for 10 min at 200 rpm, followed by a 10 min resting period. The two first mL of the flask content were discarded, and 30 mL from each flask were selected for further handling. The crude oil was extracted with liquid–liquid extraction. The solvent used was dichloromethane (5 mL, 3 times) (DCM Suprasolv
®, Merck KGaA, Darmstadt, Germany). The extracted sample was supplemented with DCM SupraSolv until the total volume was 20 mL. The sample absorbance was directly measured with a UV-VIS spectrophotometer at 340 nm, 370 nm and 400 nm. The results were compared to the calibration curve in
Figure A1, and the efficiency was determined according to the BFT test protocol equations [
24] (
Appendix A).
2.7. Bioremediation Test
The biodegradation of crude oil with the use or not of biosurfactants was determined by a 28-day bioremediation test. Triplicate treatments were made with seawater, 0.5 v/v% Iranian crude oil and nutrients N and P in C:N:P ratio 100:10:1, respectively. The time points that the hydrocarbon concentrations were determined were at time zero, day 7 and day 28. The hydrocarbon analysis was done with gas chromatography—mass spectrometry (GC–MS), according to the method described below.
For easier handling of the BSs produced during our bioreactor experiment, we had to dilute them first. For this purpose, we used two kinds of solvents, distilled water (dH2O) and soybean oil (SOY). The BS solubility in water was very low and allowed us to produce a 0.4% w/v BS-in-dH2O agent. The BS solubility in soybean oil was much higher, and we decided to produce a 15% w/v BS-in-SOY agent. Due to the significant difference in the concentration of the BSs in our agents, we decided to use higher quantity of the BS-in-dH2O agent than the BS-in-SOY agent during the experiments. We used 0.5 mL of BS-in-dH2O agent and 33.3 μL of BS-in-SOY agent in each vial with 10 mL of sea water. The final quantity of BS was 2 mg pure BS for the BS-in-dH2O experiment and 5 mg of pure BS for the BS-in-SOY experiment. Sea water was collected from Agios Onoufrios bay, Akrotiri, Chania, Greece.
2.8. Hydrocarbon Extraction and GC–MS Analysis
Liquid–liquid extraction was used to obtain the hydrocarbons extract, free from the culture medium. The organic compounds were extracted using equal volumes of DCM Suprasolv® (Merck KGaA, Darmstadt, Germany) (3× for each extraction) in 100 mL separatory funnels. The funnels were shaken manually to assist the dissolution of the organic compounds. Solvent removal was performed on a rotary evaporator, and the extracts were transferred to 4 mL vials with DCM Suprasolv® and were concentrated under nitrogen flow. The extracts were eluted through SPE columns (Bond Elute TPH, Agilent Technologies, Inc., Santa Clara, CA, USA) and separated in saturated and aromatic hydrocarbon fractions with n-hexane Suprasolv® (Merck KGaA, Darmstadt, Germany) and DCM Suprasolv®, respectively. The saturated and aromatic fractions were analyzed using an Agilent GC–MS HP 7890/5975C system, with an Agilent HP-5MS 5% phenyl methyl siloxane column (60 m × 250 μm × 0.25 μm). The Oil Analysis Standard (Absolute Standards Inc.®, Hamden, CT, USA), containing 44 compounds, and a 17a(H),21b(H)-hopane (Chiron AS®, Trondheim, Norway) were used for calibration. Theoil analysis standard consists of normal alkanes from C10 to C35, pristane and phytane and 16 polycyclic aromatic hydrocarbons (PAHs) (naphthalene, anthracene, phenanthrene, fluorene, pyrene, dibenzothiophene, fluoranthene, chrysene, benzo(a)pyrene, benzo(b)fluoranthene, benzo(e)pyrene, benzo(k)fluoranthene, perylene, indeno(g,h,i)pyrene, dibenzo(a,h)anthracene and benzo(1,2,3-cd)perylene).
4. Discussion
Biosurfactant production by strain Alcanivorax borkumensis SK2 using heavy oil fractions as carbon source was investigated. The aim of this investigation was to produce BS without any impurities from the substrate. HOF-2 as a ‘smart’ carbon source proved to be nonsoluble in the aqueous phase, providing a high-purity BS product. By immobilizing the HOF-2 carbon source on sterilized nets, we succeeded in its easy handling and removal from the liquid face. The bacteria used the carbon source to produce biosurfactants without being able to dissolve it, and in this way, they released the biosurfactants without any oil impurities in the liquid. The BS produced was identified by TLC, compared with a rhamnolipid mixture standard. The final BS product is a honey-like substance consisting of mono- and di-rhamnolipids and two more glycolipids.
The BSs were further investigated in their ability to degrade crude oil. For better handling, the BSs were dissolved in water and soybean oil. BSs dissolved in water enhanced bioremediation, and the average percentage of reduction of saturated hydrocarbons by day 28 was 52.18%. When soybean oil was used as solvent, the saturated hydrocarbons decreased by 29.45%. The mass reduction of aromatic hydrocarbons was negligible after 28 days of experiment in both cases.
The maximum BS concentration produced by
A. borkumensis SK2 in the bioreactor with HOF-2 as the carbon source was about ~20 mg/L. The stable conditions of the bioreactor improved the BS production by
A. borkumensis SK2 by 4 mg/L, approximately, comparing it with the preliminary tests. Nevertheless, comparing those concentrations with literature data, a fast conclusion would be that the concentration is too low. For instance, a 46 g/L rhamnolipids production yield was performed by
P. aeruginosa UFPEDA 614 when a solid-state cultivation with glycerol, sunflower seed meal and sugarcane bagasse was used [
6]. The unique outcome of this research is that the BS product is clean from substrate impurities and can be extracted using a simple liquid–liquid extraction, eliminating the money and time-consuming process of column chromatography purification.