1. Introduction
African swine fever (ASF) is a highly contagious and hemorrhagic disease affecting susceptible pigs of all age groups, caused by the African swine fever virus (ASFV). Since its emergence in China in August 2018, ASF has rapidly spread throughout the country, impacting the pig industry [
1]. Global efforts have been made to create a safe and effective vaccine against ASF, with a particular focus on understanding the infection and pathogenic mechanism of ASFV [
2]. Nevertheless, there have been limited investigations into the correlation between host metabolism and ASFV infection. It has been reported that host metabolic processes play a crucial role in the development of infectious diseases [
3,
4,
5,
6,
7]. In other words, viruses can exploit cellular metabolites to complete their life cycles, while viral infections can also disrupt metabolic processes in various organs, tissues, and cells. Lastly, metabolites and metabolic reactions can influence viral infection by regulating the host immune response [
8,
9].
In short, maintaining metabolic homeostasis is the basis for the body to perform a normal physiological function, and an imbalance of metabolic homeostasis can promote a variety of virus infections [
10]. During viral replication, there is an increased demand for ATP, biosynthetic precursors, and reducing agents, as viruses lack their own energy and material synthesis systems. By augmenting the energy metabolism and material metabolism of the host organism, ASFV replication is enhanced.
Glucose and glutamine serve as common metabolic fuels for rapidly proliferating cancer cells. Similarly, virus-infected target cells exhibit a predilection for utilizing glucose and glutamine. Glutamine, the predominant amino acid in the bloodstream, undergoes metabolic conversion to α-ketoglutaric acid, which then enters the tricarboxylic acid cycle as part of the feed process. This metabolic pathway is essential for viral mRNA transcription, viral protein synthesis, and viral replication. α-Ketoglutaric acid enters the TCA cycle to generate energy, which can then be converted to pyruvate and lactic acid. It can also reverse the tricarboxylic acid cycle to produce citric acid for lipid synthesis, meeting the needs of cell membranes for rapid division. The TCA cycle not only provides cells with ATP but also precursors for macromolecular synthesis, such as malic acid for gluconeogenesis, NADH for oxidative phosphorylation, and succinyl CoA for ferroheme synthesis. Moreover, glutamine also plays a role in the production of amino acids and nucleotides within cells.
A metabolomics study showed that ASFV infection speeds up viral replication by making the host’s energy and amino acid metabolism work harder in the early stages of infection. Additionally, the buildup of lactic acid inhibits IFNβ and further facilitates viral replication during the later stage of infection [
11]. The replication of PRRSV can be controlled by blocking glucose and glutamine metabolism. Epigallocatechin gallate (EGCG) and Telaglenastat (CB-839), which specifically target glutamine metabolism, have been found to effectively suppress the replication of PRRSV [
5]. Moreover, supplementing with glutamine can partially rescue viral replication, and using α-ketoglutaric acid (AKG) supplementation, a substance that metabolizes glutamine to compensate for the TCA cycle, can also rescue porcine reproductive and respiratory syndrome virus (PRRSV) replication. These studies collectively indicate that viral infections increase the host’s energy and material metabolism in order to facilitate self-replication. Multiple studies have investigated the significance of glucose and glutamine in functioning as the primary sources of energy for virus-infected cells, which facilitates their self-replication. Moreover, inhibiting the metabolic processes involving glutamine and glucose can effectively impede viral replication [
3,
4,
5,
12,
13,
14].
To identify natural small-molecule compounds that can inhibit ASFV replication by regulating the energy metabolism pathway, we conducted an evaluation of the ASFV infection’s preference for glucose and glutamine metabolism according to the established correlation between the rate of consumption and replication. Using metabolomics, we screened differential metabolites in the later stages of infection, and we confirmed that these metabolites had an effect on the glutamine metabolic pathway and ASFV replication. Our results show a significant correlation between the rate of viral replication and the pace at which glutamine is consumed following ASFV infection. However, the correlation with the rate of glucose consumption was weak. Notably, upon the exhaustion of glucose and glutamine, it was observed that the depletion of glutamine in particular had a notable inhibitory effect on ASFV replication. After being infected with the ASFV, it is recommended to use glutamine as the preferred metabolic substrate. Then, the target cell metabolite phenyllactic acid (PLA) is considerably increased, while glutamine metabolism is suppressed. PLA is an important broad-spectrum antimicrobial compound that inhibits the growth of undesirable microbes through multifaceted action. The mechanisms of PLA-associated microbial inhibition and antivirulence actions have been studied. Similarly, pretreating PLA suppressed the intake of glutamine. Simultaneously, the pathways of nucleotide metabolism and amino acid metabolism that are associated with glutamine were suppressed. Thus, viral replication can be inhibited by reducing the components necessary for the synthesis of progeny viruses.
In conclusion, our findings demonstrate that PLA can impede the glutamine metabolic pathway in the host, which directly hinders ASFV infectivity. This study offers a potential avenue for the development of anti-ASFV drugs.
2. Materials and Methods
2.1. Cell Culture, Virus, and Reagents
Porcine alveolar macrophages (PAMs) from healthy pigs were harvested and preserved in our laboratory. The PAMs were cultured in an RPMI 1640 medium (Gibco) supplemented with 15% heat-inactivated fetal bovine serum (FBS) and incubated at 37 °C with 5% carbon dioxide (CO2). The ASFV CN/GS/2018 strain, belonging to genotype II, was isolated and preserved in the P3 level biosafety laboratory of our institution. The recombinant ASFV with green fluorescence was constructed by the homologous recombination method. In a 6-well culture plate, 5 × 106 cells per well were transfected with 4 ug homologous recombinant plasmid, and ASFV-WT with MOI = 1 was added after 30 min and observed overnight, and the virus was purified using the limited dilution method, named ASFV-GWT. The recombinant strain ASFV-GWT carrying GFP was constructed and kept in the P3 level biosafety laboratory of our institution.
2.2. Reagents and Antibodies
Phenyllactic acid (PLA) and 2-deoxy-D-glucose (2DG) were purchased from MedChemExpress (MCE; Monmouth Junction, NJ, USA); a polyclonal antibody against ASFV p72 protein was synthesized in our laboratory as described previously and was used for Western blot assays. Rabbit monoclonal antibody (mAb) against β-actin was purchased from MBL (Nagoya, Japan). Glutamine was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Epigallocatechin gallate (EGCG) was obtained from Aladdin (Shanghai, China). The glucose used in this study was obtained from Sigma-Aldrich (St. Louis, MO, USA).
2.3. RNA Extraction and Real-Time Quantitative Reverse-Transcription Polymerase Chain Reaction (qRT-PCR)
Viral RNA was extracted from cultured cells using the TRIzol reagent (Takara, Dalian, China). For the qRT-PCR tests, we used the BioRad CFX96 real-time PCR system in conjunction with a Takara One Step TB Green PrimeScript RT-PCR Kit. The ASFV RNA content was quantified using primers that target the ASFV p72 gene. SLC1A5, GLUT2, GLUT4, and GLS1 RNA content was quantified using the specific primers for each gene. The primer sequences are presented in
Table S1.
2.4. Western Blot Assay
The samples were vortexed for 10 min at 4 °C after being lysed using RIPA lysis buffer that contained 1 mM of phenylmethylsulfonyl fluoride protease inhibitor (Beyotime, Shanghai, China). The supernatants were then denatured in 5× sample loading buffer at 98 °C for 10 min and subjected to Western blotting. The target proteins were separated by 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (EMD Millipore, Billerica, MA, USA). The membranes were then blocked with 5% skim milk in TBST at room temperature for 2 h and then incubated with an appropriate primary antibody (1:1000) overnight at 4 °C and a secondary antibody (1:5000) at room temperature for 2 h. Antibody–antigen complexes were visualized with chemiluminescence detection reagents (Share-bio Biotechnology, Shanghai, China).
2.5. Metabolite Extraction and Data Acquisition through LC-MS Analysis
The metabolic analysis of cells infected with ASFV and control for 24 h was carried out by the APTBIO firm in Shanghai, China, using LC-MS technology. The culture medium from the cultured PAM cells (~107 cells per sample) was removed using a pipette. Then, the cells were washed with PBS under 37 °C, and the PBS was removed. Then, 800 μL of cold methanol/acetonitrile (1:1, v/v) was added to remove the protein and extract the metabolites. The mixture was collected into a new centrifuge tube, and centrifugation was performed at 14,000× g for 5 min at 4 °C to collect the supernatant. The supernatant was dried in a vacuum centrifuge. For LC-MS analysis, the samples were redissolved in 100 μL of acetonitrile/water (1:1, v/v) solvent. For studying the untargeted metabolomics of polar metabolites, the extracts were analyzed using a quadrupole time-of-flight mass spectrometer (Sciex TripleTOF 6600) with the spectrometry method coupled to hydrophilic interaction chromatography via electrospray ionization at Shanghai Applied Protein Technology Co., Ltd. (Shanghai, China) LC separation was accomplished on an ACQUIY UPLC BEH Amide column (2.1 mm × 100 mm, 1.7 µm particle size (waters, Ireland) using a gradient of solvent A (25 mM ammonium acetate and 25 mM ammonium hydroxide in water) and solvent B (acetonitrile). The gradient was 85% B for 1 min and was linearly reduced to 65% in 11 min; then, it was reduced to 40% in 0.1 min and kept for 4 min and then increased to 85% in 0.1 min, with a 5 min re-equilibration period employed. The flow rate was 0.4 mL/minute, the column temperature was 25 °C, the autosampler temperature was 5 °C, and the injection volume was 2 µL. The mass spectrometer was operated in both negative and positive ion modes. The ESI source conditions were set as follows: ion source gas 1 (Gas1) as 60; ion source gas 2 (Gas2) as 60; curtain gas (CUR) as 30; source temperature, 600 °C; IonSpray Voltage Floating (ISVF), ±5500 V. In MS acquisition, the instrument was set to acquire over the m/z range of 60–1000 Da, and the accumulation time for the TOF MS scan was set at 0.20 s/spectra. In auto MS/MS acquisition, the instrument was set to acquire over the m/z range of 25–1000 Da, and the accumulation time for the product ion scan was set at 0.05 s/spectra. The product ion scan was acquired using information-dependent acquisition (IDA) with a high-sensitivity mode selected. The parameters were set as follows: the collision energy (CE) was fixed at 35 V with ±15 eV; the declustering potential (DP) was 60 V (+) and −60 V (−); isotopes within 4 Da were excluded, and the number of candidate ions to monitor per cycle was 10.
2.6. Data Analysis
The raw MS data (wiff.scan files) were converted to MzXML files using ProteoWizard MSConvert before importing them into freely available XCMSplus software. For peak picking, the following parameters were used: centWave m/z = 25 ppm, peak width = c (10, 60), and prefilter = c (10, 100). For peak grouping, bw = 5, mzwid = 0.025, and minfrac = 0.5 were used. In the extracted ion features, only the variables having more than 50% of the nonzero measurement values in at least one group were kept. Compound identification of metabolites by MS/MS spectra with an in-house database established with available authentic standards. After normalization to total peak intensity, the processed data were uploaded before importing into SIMCA-P (version 14.1, Umetrics, Umea, Sweden), where they were subjected to multivariate data analysis, including Pareto-scaled principal component analysis (PCA) and orthogonal partial least-square discriminant analysis (OPLS-DA). Seven-fold cross-validation and response permutation testing were used to evaluate the robustness of the model. The variable importance in the projection (VIP) value of each variable in the OPLS-DA model was calculated to indicate its contribution to the classification. Significance was determined using an unpaired Student’s t-test. A VIP value of > 1 and p < 0.05 were considered statistically significant.
2.7. Bioinformatics Analysis
For KEGG pathway annotation, the metabolites were blasted against the online Kyoto Encyclopedia of Genes and Genomes (KEGG) database to retrieve their COs and were subsequently mapped to pathways in KEGG11. The corresponding KEGG pathways were extracted. To further explore the impact of differentially expressed metabolites, enrichment analysis was performed. KEGG pathway enrichment analyses were performed using Fisher’s exact test, considering the whole metabolites of each pathway as the background dataset. Only pathways with
p-values under a threshold of 0.05 were considered as significantly changed pathways. For hierarchical clustering, Cluster 3.0 (
http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm) (accessed on 1 November 2022) and the Java Treeview 6.0 software (
http://jtreeview.sourceforge.net) (accessed on 1 November 2022) were used. The Euclidean distance algorithm for similarity measurement and the average linkage clustering algorithm (the centroids of the observations were used for clustering) were chosen to perform hierarchical clustering. A heatmap was often generated as a visual aid in addition to dendrograms.
2.8. Measurement of Glucose and Glutamine Consumption
The rates of glucose and glutamine consumption were determined using a Glucose Content Assay Kit (Solarbio, Beijing, China) and a Glutamine (Gln) Content Assay (Solarbio, Beijing, China), respectively.
2.9. Enzyme Activity Analysis
Glucokinase and glutaminase-1 activity was measured using a Glucokinase Activity Assay Kit (Geruisi-Bio, Suzhou, China) and a Glutaminase (GLS) Activity Assay Kit (Solarbio, Beijing, China).
4. Discussion
Blocking glutamine metabolism can significantly inhibit ASFV replication. After infection, host glutamine metabolism is weakened, and viral replication is inhibited. The metabolomics analysis of differential metabolites showed that ASFV infection induced metabolic reprogramming in the host, and the metabolite PLA accumulated in large quantities in the late stage of infection, while glutamine metabolism and the related metabolic pathways were weakened. Phenyllactic acid (PLA) is an important broad-spectrum antimicrobial compound that inhibits the growth of undesirable microbes through multifaceted actions. The mechanisms of PLA-associated microbial inhibition and antivirulence actions have been studied. PLA pretreatment facilitated the inhibition of ASFV replication and glutamine consumption by PLA. Further metabolomics analysis was performed to investigate the effect of PLA on ASFV hijacking glutamine metabolism to promote self-replication. The results of pretreatment with PLA showed that PLA could significantly inhibit the increased concentration of glutamine induced by ASFV infection and the metabolic flux of related pathways involved in glutamine metabolism. PLA had an influence on key glutamine metabolic pathways by inhibiting the activity of GLS, a key enzyme of the glutamine metabolic pathway, but had no effect on the glucose transporter.
Glucose and glutamine are commonly used metabolic fuels in mammalian cells [
15], and the ASFV uses ATP and biosynthetic precursors generated by glucose and glutamine metabolism to promote self-replication after infection [
16]. Although an increase in ASFV infection increased the consumption of glutamine and glucose at the same time, the correlation between the metabolic rates of glutamine and glucose and ASFV replication suggests that the catabolism of glutamine is mainly used for self-replication after ASFV infection, which can also be explained by the fact that the effect of glutamine supplementation on saving ASFV replication was significantly higher than that of glucose supplementation. The metabolomics analysis of late-stage ASFV infection showed that a large amount of PLA accumulated in the late stage of ASFV infection, while glutamine metabolism and glutamine-related metabolic pathways were inhibited. It is speculated that the accumulation of PLA leads to the inhibition of glutamine metabolism through the feedback of host metabolic reprogramming. PLA acts as a spectral antifungal and antibacterial metabolite [
17,
18]. To verify the effect of PLA on viral replication, we used PLA to treat PAM cells, which slowed down the rate of glutamine uptake and stopped the replication of ASFV. This suggests that PLA can be used as a natural small-molecule compound for antiviral purposes. ASFV needs to hijack the host metabolism for its own replication. Nucleotides and amino acids are used as raw materials for the replication and synthesis of progeny viruses, which are related to glutamine metabolism. Therefore, in order to explore the effects, we performed metabolomics analysis, and the results showed that PLA pretreatment significantly reduced the metabolic flux of glutamine, nucleotide metabolism (including purine and pyrimidine metabolism), and amino acid biosynthetic flux, and therefore reduced the raw material for ASFV replication at the feedstock level. Thus, the replication level of ASFV was reduced.
Consistent with previous studies [
11], ASFV increased host energy metabolism and amino acid metabolism in the early stage of infection, promoted self-replication, and inhibited amino acid metabolism in the later stage of infection. Using metabolomics, this study revealed that a considerable amount of PLA accumulated at the end of the infection and suppressed glutamine metabolism. This inhibited the amino acid biosynthetic flux and nucleotide biosynthetic flux involved in glutamine metabolism, which indirectly affected ASFV replication.
In the early stage of ASFV infection, the virus hijacks and increases the host’s glutamine and glucose metabolism to promote viral replication, while PLA accumulates over time and gradually reduces the transcription of glutamine transporter and the activity of GLS, a key enzyme in glutamine metabolism, in the late stage of ASFV infection, thereby reducing the level of glutamine metabolism. Affected by the decrease in glutamine metabolism, glutamine-related metabolic pathways, including amino acid bio-anabolism and nucleotide metabolism, also weaken. Thus, the biosynthetic precursors used for ASFV replication are reduced to effectively inhibit ASFV replication (
Figure 7).
Although PLA can inhibit viral replication by inhibiting glutamine metabolism, it can also be used as a potential antiviral drug. However, for the body, immune cells that require a large number of substances and considerable energy for metabolic functions, including the activation of macrophages and the proliferation and activation of T/B lymphocytes caused by infection, also require a large intake of glucose and glutamine to meet their metabolic needs in terms of energy consumption and substance intake [
19,
20,
21]. We have formulated the following questions to provide valuable insights for future scholars in this field: Does PLA have an inhibitory effect on the activation and proliferation of these immune cells? Can a reduction in the degree of activation and proliferation of immune cells lead to immunosuppression and thus aggravate the disease [
22]? More research is needed to determine these issues.