Tetanus Toxin Synthesis is Under the Control of A Complex Network of Regulatory Genes in Clostridium tetani
Abstract
:1. Introduction
2. Results
2.1. Genomic Analysis of Regulatory Genes in C. tetani
2.2. Construction of TCS Anti-Sense Strains
2.3. TeNT Synthesis is Altered in Five TCS Anti-Sense Strains and in the codY Anti-Sense Strain
2.4. Five TCSs and codY Control Tent and/or Tetr at the Transcriptional Level
2.5. The CTC_RS07315 and CTC_RS04785 Response Regulators as well as Cody Bind to the Tent Promoter
2.6. Inorganic Phosphate (Pi) Influences TeNT Production
2.7. Carbonate Stimulates TeNT Synthesis
2.8. The TCS CTC_RS05745/CTC_RS05750 is Involved in Bacterial Cell Wall Organization
3. Discussion
4. Materials and Methods
4.1. Bacterial Strains and Culture Conditions
4.2. Construction of Vectors Encoding Anti-Sense mRNA for the Different Two-Component Systems (TCS) and Others Regulators
4.3. Tetanus Toxin Assay
4.4. Total RNA Extraction, Reverse Transcription and Quantitative Real-Time PCR Assay
4.5. Expression and Purification of Recombinant Proteins
4.6. Electrophoretic Mobility Shift Assay (EMSA)
4.7. Electron Microscopy
4.8. Statistical Analysis
Supplementary Materials
Author Contributions
Funding
Conflicts of Interest
References
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Recombinant Antisense mRNA Plasmid | Gene Bank Accession Number | Other Gene Name | Role | Familly (RR) | Genetic Environment | Homology | Homologs (RR) in Other Clostridia (Protein Identity > 60%) | Homolog TCS in C. botulinum strain Hall | Homolog TCS in C. botulinum Strain ATCC 3502 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Old Locus Tag | Locus Tag | Homolog System (RR/SHK) | Protein Identity (RR) | Regulation of Botulism Neurotoxin | Homolog System (RR/SHK) | Protein Identity/Positive | |||||||
chromosomal localization | |||||||||||||
CTC_00189 | CTC_RS00820 | RR | OmpR | Periplasmic endopeptidase | ResD, respiration control | C. botulinum, C. cochlearium, C. tetanomorphum, C. scatologenes, C. drakei, C. magnum, C. sporogenes, C. tyrobutyricum, C. acetireducens, C. ljungdahlii, C. novyi, C. pasteurianum, | CLC_3521/CLC_3520 | 81% | None | CBO3543 | 81/87 | ||
CTC_00191 | CTC_RS00825 | SHK | CBO3542 | 67/73 | |||||||||
CTC_00392 | CTC_RS01985 | RR | OmpR | ABC Transporter | BacS/BacR regulation of resistance to bacitracin | C. botulinum, C. tetanomorphum, C. sporogenes, C. lundense, C. cavendishii, C. acetobutylicum, C. pasteurianum, C. ljungdahlii | CLC_0331/CLC_0332 | 90% | None | CBO0272 | 90/92 | ||
CTC_00393 | CTC_RS01990 | SHK | CBO0273 | 86/89 | |||||||||
CTC_00411 | CTC_RS02080 | phoP | RR | OmpR | hydroxylamne reductase | VirI/VirJ regulation of toxin synthesis | C. botulinum, C. perfringens, C. carboxidivorans, C. pasteurianum, C. lundense, C. novyi, C. Septicum | CLC_0661/CLC_0663 | 65% | Positive | CBO0607 | 64/72 | |
p1308 | CTC_00412 | CTC_RS02085 | phoR | SHK | CBO0608 | 46/55 | |||||||
CTC_00455 | CTC_RS02330 | RR | phosphomannomutase/ phosphoglucomutase | putative rRNA methylase | C. tetanomorphum, C. ljungdahlii, C. homopropionicum | CLC_0413 | 55% | unknown | CBO0355 | 54/59 | |||
CTC_00456 | CTC_RS14405 | SHK | no | ||||||||||
CTC_00597 | CTC_RS02990 | RR | OmpR | Glycerine-deshydrogenase | BacR regulation of resistance to bacitracin | C. lundense, C. tetanomorphum, C. ljungdahlii, C. argetinense, C. drakei | CLC_2212/CLC_2211 | 45% | None | several | 45/66 | ||
CTC_00598 | CTC_RS02995 | SHK | no | ||||||||||
CTC_00628 | CTC_RS03125 | spaR | RR | OmpR | ABC Transporter SpaEFG: export subtiline | SpaR/SpaK regulation of resistance to subtilin | C. botulinum, C. novyi, C. beijerinckii, C. saccharobutylicum, C. butyricum, C. sporogenes | CLC_1615/CLC_1616 | 65% | unknown | CBO1585 | 65/69 | |
CTC_00629 | CTC_RS03130 | spaK | SHK | CBO1586 | 37/43 | ||||||||
CTC_00805 | CTC_RS04010 | RR | OmpR | Protein transport | VanR/VanS regulation of resistance to vancomycin | C. botulinum, C. cochlearium, C. tetanomorphum, C. lundens, C. carboxidivorans, C. sporogenes, C. pasteurianum | CLC_0423/CLC_0424 | 76% | None | CBO0365 | 78/82 | ||
CTC_00806 | CTC_RS04015 | SHK | CBO0366 | 44/50 | |||||||||
CTC_00848 | CTC_RS04235 | RR | OmpR | Heat shock protein | GtcS/GtcR regulation of antibiotic synthesis (gramicidin) | C. lundense, C. tetanomorphum, C. amylolyticum, C. perfringens | CLC_1640/CLC_1639 | 48% | None | several | 47/55 | ||
CTC_00849 | CTC_RS04240 | SHK | no | ||||||||||
CTC_00872 | CTC_RS04365 | RR | OmpR | Efflux-ATPase Copper | Arc, regulation of aerobic/anaerobic respiration | C. botulinum, C. tetanomorphum, C. lundense, C. sporogenes, C. pasteurianum, C. beijerinckii,, C. ljungdahlii | CLC_1088/CLC_1089 | 68% | None | CBO1035 | 66/71 | ||
CTC_00873 | CTC_RS04370 | SHK | CBO1036 | 55/63 | |||||||||
CTC_00924 | CTC_RS04645 | SHK | PucR | Zn-dependent protease | regulation of purine catabolism, methyl-accepting chemotaxis protein | No | CBO1773 | 43/50 | |||||
CTC_00925 | CTC_RS04650 | RR | no | ||||||||||
p1309 | CTC_00934 | CTC_RS04705 | SHK | AraC | amihydrolase; Pyruvate formate lyase | LytS, autolysis regulation | C. botulinum B str. Eklund 17B, C. novyi | CLC_1627 | 41% | unknown | no | ||
CTC_00935 | CTC_RS04710 | RR | no | ||||||||||
CTC_00949 | CTC_RS04780 | virS | SHK | LytR/AlgR | transcriptional regulator, merR family; putative methyl-accepting chemotaxis protein | virulence regulation | C. butyricum, C. septicum | CLC_1105/CLC_1104 | 35% | None | no | ||
p1310 | CTC_00950 | CTC_RS04785 | virR | RR | CBO1053 | 35/54 | |||||||
CTC_01130 | CTC_RS05745 | RR | OmpR | ABC Transporteur: phosphates | PhoP/PhoR, regulation of phosphate uptake | C. lundense, C. carboxidivorans, C. ljungdahlii, C. botulinum, C. sporogenes, C. butyricum, C. acetobutylicum, C. butyricum, C. pasteurianum, C. neonatale, C. baratii | CLC_2386/CLC_2385 | 73% | None | CBO2527 | 73/87 | ||
p1311 | CTC_01131 | CTC_RS05750 | phoR | SHK | CBO2526 | 52/75 | |||||||
p1312 | CTC_01211 | CTC_RS06180 | tlpA | SHK | LysR | anaerobic sulfite reductase | LytR, autolysis regulation, methyl-accepting chemotaxis protein tlpA | C. cochlearium | CLC_3570 | 35% | unknown | CBO2828 | 36/61 |
CTC_01212 | CTC_RS06185 | RR | several | 35/57 | |||||||||
CTC_01420 | CTC_RS07310 | resE | SHK | OmpR | ABC Transporter | YycG/YycF, regulation of cell division | C. lundense, C. cellulovorans, C. amylolyticum, C. botulinum, | CLC_0842/CLC_0843 CB00786/CB00787 * | 58% | None Negative | CBO0787 | 47/65 | |
p1419 | CTC_01421 | CTC_RS07315 | RR | CBO0786 | 58/76 | ||||||||
CTC_01481 | CTC_RS07700 | SHK | OmpR | Conserved proteins with transmembrane helices and 4Fe4S motif | FeuQ/FeuP, regulation of iron acquisition | C. novyi, C. yurii | CLC_3521/CLC_3520 | 43% | None | no | |||
CT_01482 | CTC_RS07705 | RR | several | 43/60 | |||||||||
CTC_01490 | CTC_RS07755 | RR | OmpR | Heat shock protein HtpG (chaperonne); Membrane protein | unknown | C. lundense, C. tetanomorphum, C. kluyveri, C. pasteurianum, C. carboxidivorans, C. ljungdahlii, C. tyrobutyricum, C. acetobutylicum | CLC_0423/CLC_0424 | 44% | None | several | 44/64 | ||
CTC_01491 | CTC_RS07760 | SHK | no | ||||||||||
CTC_01523 | CTC_RS07895 | RR | NarL | Fumarate-reductase soluble flavoprotein | DcuR, regulation of fumarate anaerobic respiration through C4-dicarboxylates | C. cochlearium | CLC_0307/CLC_0306 | 48% | None | CBO0249 | 48/69 | ||
CTC_01524 | CTC_RS07900 | dpiB | SHK | CBO0248 | 41/60 | ||||||||
CTC_01804 | CTC_RS09305 | SHK | OmpR | ABC Transporter | BacS/BacR, AB-Bacitracine synthesis and regulation | C. tetanomorphum, C. lundense, C. novyi | CLC_2212/CLC_2211 | 56% | None | CBO2284 | 47/72 | ||
CTC_01805 | CTC_RS09310 | RR | CBO2285 | 56/79 | |||||||||
CTC_01818 | CTC_RS09380 | resE | SHK | OmpR | ABC Transporter; RNA polymerase sigma factor | unknown | C. tetanomorphum, C. lundense, C. ljungdahlii, C. cavendishii | CLC_0842/CLC_0843 CB00786/CB00787* | 51% | None Negative | CBO0787 | 38/63 | |
CTC_01819 | CTC_RS09385 | RR | CBO0786 | 51/71 | |||||||||
CTC_01848 | CTC_RS14320 | yesM | SHK | NarL/FixJ | Fumarate-reductase | unknown | C. cochlearium | CLC_2236/CLC_2235 | 26% | None | no | ||
CTC_01849 | CTC_RS09510 | RR | no | ||||||||||
CTC_01857 | CTC_RS09550 | SHK | XRE | Helicase, oleate hydratase | SinR regulation of entry in stationary phase, to nutrient depletion; Spo0A repressor | C. botulinum CDC_69094, C. magnum, C. beijerinckii | No | CBO0693 | 48/70 | ||||
CTC_01858 | CTC_RS09555 | sinR | RR | no | |||||||||
CTC_01905 | CTC_RS09790 | SHK | OmpR | ABC Transporter | BacR; VanR (synthèse et régulation AB) | C. indolis, C. methoxybenzovorans | CLC_0423/CLC_0424 | 45% | None | no | |||
CTC_01906 | CTC_RS09795 | RR | CBO0365 | 45/66 | |||||||||
CTC_01918 | CTC_RS09860 | resE | SHK | OmpR | ABC Transporter | BacR; VanR (synthèse et régulation AB) | C. kluyveri, C. uliginosum, C. puniceum, C. scatologenes, C. saccharobutylicum, C. oryzae, C. ljungdahlii, C. lundense, C. drakey, C. botulinum B2 331, C. sporogenes, C. acetobutylicum, C. butyricum | CLC_0842/CLC_0843 CB00786/CB00787* | 42% | None Negative | CBO0787 | 32/53 | |
CTC_01919 | CTC_RS09865 | RR | CBO0786 | 42/60 | |||||||||
p1313 | CTC_01951 | CTC_RS10030 | phoR | SHK | OmpR | Heavy metal translocating P-type aTPase | PhoP/PhoR regulation of phosphate uptake | C. cochlearium, C. lundense, C. tetanomorphum, C. intestinale, C. amylolyticum, C. baratii, C. botulinum, C. chauvoei, C. sporogenes, C. perfringens, C. ljungdahlii | CLC_0410/CLC_0411 | 68% | Positive | CBO0353 | 57/78 |
CTC_01953 | CTC_RS10035 | phoP | RR | CBO0352 | 68/86 | ||||||||
CTC_01978 | CTC_RS10150 | SHK | LytR/AlgR | carbon starvation protein A CstA | LytS/LytR autolysis regulation | C. cochlearium, C. tetanomorphum, C. lundense | CLC_3250/CLC_3251 | 55% | None | CBO3309 | 51/71 | ||
p1314 | CTC_01979 | CTC_RS10155 | RR | CBO3308 | 55/78 | ||||||||
CTC_02155 | CTC_RS11115 | SHK | OmpR | DNA mismatch repair protein hexA | VanS/VanR regulation of resistance to glycopeptides | C. carboxidivorans, C. lundense, C. amylolyticum, C. botulinum, C. oryzae, C. pasteurianum, C. sporogenes, C. novyi, C. neonatale | CLC_1640/CLC_1639 | 77% | None | CBO1612 | 48/68 | ||
CTC_02156 | CTC_RS11120 | RR | CBO1613 | 77/86 | |||||||||
CTC_02178 | CTC_RS11240 | SHK | Fis | ethanolamine utilization protein EutA, EutP | EutS/EutR regulation of éthanolamine utilization | C. argentinense, C. drakei, C. lundense, C. tetanomorphum | No | no | |||||
CTC_02179 | CTC_RS11245 | RR | no | ||||||||||
CTC_02322 | CTC_RS11915 | RR | Fis | sodium/glutamate symport carrier protein; V-Typ-ATPase-protein | AtoS/AtoC regulation of acetoacetate metabolism | C. cochlearium, C. lundense, C. tetanomorphum | CLC_1882 | 40% | unknown | several | 46/63 | ||
CTC_02323 | CTC_RS11920 | SHK | no | ||||||||||
plasmid localization | |||||||||||||
p1307 | CTC_p22 | CTC_RS13810 | SHK | OmpR | ATP-binding protein | unknown | C. lundense | CLC_1431/CLC_1432 | 56% | None | CBO1395 | 39/60 | |
CTC_p21 | CTC_RS13805 | RR | CBO1394 | 56/74 |
Isogenic Antisense Strains | Target Gene | S/R | Primer | Nucleotide Sequence (5′--> 3) | Product Length (bp) |
---|---|---|---|---|---|
CN655/1307 | CTC_p22 | S | P2020-F | CCGCTGCAGGATAATTTGGGAATGATTATTTTA | 228 |
P2021-R | GGCCATGGTTAACATATCGTCCATACTC | ||||
CN655/1308 | CTC_00412 | S | P2022-F | CCGCTGCAGGAGGTGATTGAAAAATAG | 208 |
P2023-R | GGCCATGGTAAATCTAACATAGTAAATTTATAC | ||||
CN655/1310 | CTC_00950 | R | P2024-F | CCGCTGCAGGGAGGGTTAAATTATGTATAATG | 236 |
P2025-R | GGCCATGGGCTACTTCTATACCATTTATTTC | ||||
CN655/1309 | CTC_00934 | S | P2026-F | CCGCTGCAGCAGGGGGTATTTTTGTGTTAAATAATAGG | 236 |
P2027-R | GGCCATGGCATTGGCATCGCAACATATGCG | ||||
CN655/1312 | CTC_01211 | S | P2028-F | CCGCTGCAGGGGGAGACAGTGGTGAAGTTGCG | 223 |
P2029-R | GGCCATGGGGTTAAAAAATTTTCTTTTATATTTC | ||||
CN655/1314 | CTC_01979 | R | P2030-F | CCGCTGCAGGAGATGAATTTATGAACAAAAT | 231 |
P2031-R | GGCCATGGGCTAATTCCATGCCATTTTTAG | ||||
CN655/1311 | CTC_01131 | S | P2032-F | CCGCTGCAGGGTGGTAAAATGAAAAAAAG | 245 |
P2033-R | GGCCATGGCCTTATATCACTATCATTA | ||||
CN655/1313 | CTC_01951 | S | P2034-F | CCGCTGCAGGGAAGGTAGAAAATGAAAAGTATAAAG | 243 |
P2035-R | GGCCATGGCCACATTATCCATTATATTTTCTTC | ||||
CN655/1419 | CTC_01421 | R | P2291-F | CCGCTGCAGGGGAGATTTTGTGAACAACATATT | 242 |
P2292-R | GGCCATGGTCTGATGCCTTTCTTATTTCTTTAC | ||||
CN655/1418 | CTC_01260 | CodY | P2289-F | CCGCTGCAGGAGGAGTTACAAATGTCATCATTATTA | 232 |
P2290-R | GGCCATGGACTACCTTGTCTCTTACTGTCTG | ||||
CN655/1472 | CTC_00222 | Spo0 | P2361-F | CCGCTGCAGGGAGGTATAAAATATATGATA | 225 |
P2362-R | GGCCATGGTTATTACACTCTTTAAAGGTGAA | ||||
CN655/1480 | CTC_00194 | mfd | P2359-F | CCGCTGCAGGAGGTGAATTTTATTATGAGAT | 236 |
P2360-R | GGCCATGGAATATTTTTTGCTTCTATATCG |
Target Gene | Primer | Nucleotide Sequence (5′-->3) | Product Length (bp) |
---|---|---|---|
qRT-PCR | |||
tent | P1714-F | CCAAGGTGCACAAGGAATTT | 146 |
P1715-R | CAATGTTTAATGCGGGTCCT | ||
tetR | P1726-F | GTTGCTCAAATTATTTAAACTTCGAA | 115 |
P1727-R | GCTATATCACATTCTTTCATATCTTCAAA | ||
rpoB | P2142-F | TTGAAGAATGTAAAGAGAGAGATGCTAC | 118 |
P2143-R | GGGAAGTCACCCATAAAGACA | ||
gyrA | P2146-F | AAGATGATGTAGCAGTAAGTATGGA | 98 |
P2147-R | CTCTGAAGCCAATGTCCTTTT | ||
Recombinant protein expression | |||
CTC_p21 | P2349-F | CGCCGCGGATCCATGTATAAGATATTGATTGTTGAA | 711 |
P2350-R | CCGCCGGAATTCTTACACCTGAAATAAACGATAGCC | ||
CTC_01979 | P2351-F | CGCCGCGGATCCATGAACAAAATAAATTGTGTAATAATA | 792 |
P2352-R | CCGCCGGAATTCTTAAAAATCTAATATGTCCTTTAAGTG | ||
CTC_01421 | P2353-F | CGCCGCGGATCCGTGAACAACATATTGTTAGTTGAA | 717 |
P2354-R | CCGCCGGAATTCCTATTTATTAATTTCGTAGTTCCACCT | ||
codY | P2355-F | CGCGGATCCATGTCATCATTATTAGAGAAG | 801 |
P2356-R | CCGCCGGAATTCTTACTTAATTTTTTTCAATTCCTC | ||
CTC_00935 | P2357-F | CGCGGATCCGTGTGTAGAGTAGTGCTT | 759 |
P2358-R | CCGCCGGAATTCTTATACTTTTTTATTATTCAC | ||
EMSA | |||
Ptent | P2365-F | (5’-end labelled biotin) GGTGGCTCCATCATAATAATTGTAT | 359 |
P2366-R | (5’-end labelled biotin) GGTTTTAGCATTAAAAAAATTAGAACCTA | ||
PtetR | P2363-F | (5’-end labelled biotin) CAGTATTTTTGAAATGTATAATAATTACTTC | 316 |
P2364-R | (5’-end labelled biotin) CGGTTCTCTTAATTTAGTAATATCAATAT |
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Chapeton-Montes, D.; Plourde, L.; Deneve, C.; Garnier, D.; Barbirato, F.; Colombié, V.; Demay, S.; Haustant, G.; Gorgette, O.; Schmitt, C.; et al. Tetanus Toxin Synthesis is Under the Control of A Complex Network of Regulatory Genes in Clostridium tetani. Toxins 2020, 12, 328. https://doi.org/10.3390/toxins12050328
Chapeton-Montes D, Plourde L, Deneve C, Garnier D, Barbirato F, Colombié V, Demay S, Haustant G, Gorgette O, Schmitt C, et al. Tetanus Toxin Synthesis is Under the Control of A Complex Network of Regulatory Genes in Clostridium tetani. Toxins. 2020; 12(5):328. https://doi.org/10.3390/toxins12050328
Chicago/Turabian StyleChapeton-Montes, Diana, Lucile Plourde, Cecile Deneve, Dominique Garnier, Fabien Barbirato, Vincent Colombié, Sandy Demay, Georges Haustant, Olivier Gorgette, Christine Schmitt, and et al. 2020. "Tetanus Toxin Synthesis is Under the Control of A Complex Network of Regulatory Genes in Clostridium tetani" Toxins 12, no. 5: 328. https://doi.org/10.3390/toxins12050328
APA StyleChapeton-Montes, D., Plourde, L., Deneve, C., Garnier, D., Barbirato, F., Colombié, V., Demay, S., Haustant, G., Gorgette, O., Schmitt, C., Thouvenot, C., Brüggemann, H., & Popoff, M. R. (2020). Tetanus Toxin Synthesis is Under the Control of A Complex Network of Regulatory Genes in Clostridium tetani. Toxins, 12(5), 328. https://doi.org/10.3390/toxins12050328