The Association of ATG16L1 Variations with Clinical Phenotypes of Adult-Onset Still’s Disease
Abstract
:1. Introduction
2. Materials and Methods
2.1. Participants
2.2. Single-Nucleotide Polymorphism Selection and Genotyping Using Direct Sequencing
2.3. Determination of the mRNA Levels of ATGs Using Quantitative PCR
2.4. Determination of Serum Levels of Proinflammatory Cytokines Using Enzyme-Linked Immunoabsorbent Assay
2.5. Statistical Analysis
3. Results
3.1. Clinical Characteristics of Patients with AOSD
3.2. Genotypes, Allele Frequencies, and Haplotypes: Comparing Patients with AOSD and Healthy Controls
3.3. Association of ATG16L1 Polymorphisms with ATG mRNA Expression Levels and Serum Cytokine Levels in Patients with AOSD
3.4. Association of Disease Outcomes with ATG16L1 Polymorphisms and Clinical Manifestations in Patients with AOSD
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene | SNP ID | TaqMan no. Chromosome: Position | Location | MAF | HWE (p-Value) |
---|---|---|---|---|---|
Beclin-1 | rs10512488 | C_27102741_10 17:42811886 | intron variant | A (G > A), 0.01 | 0.751 |
ATG5 | rs573775 | C_910347_20 6:106316991 | intron variant | A (G > A), 0.33 | 0.586 |
SQSTM1 | rs565280 | C_645001_20 5:179826926 | intron variant | A (G > A), 0.02 | 0.917 |
ATG16L1 | rs2241880 | C_9095577_20 2:233274722 | transcript variant | G (A > G), 0.34 | 0.064 |
rs10210302 | C_30179764_10 2:233250193 | transcript variant | T (C > T), 0.34 | 0.141 | |
rs1045100 | C_8741775_20 2:233294951 | transcript variant | C (T > C), 0.33 | 0.201 |
AOSD (n = 129) | HC (n = 129) | p value | OR (95% CI) | OR (95% CI) a | |||
---|---|---|---|---|---|---|---|
ATG16Lrs2241880 | 0.001 ** | ||||||
GG | 7 (5.4%) | 22 (17.1%) | Reference | Reference | |||
AG | 74 (57.4%) | 50 (38.8%) | 4.65 | (1.85–11.71) | 4.72 | (1.87–11.90) | |
AA | 48 (37.2%) | 57 (44.2%) | 2.65 | (1.04–6.73) | 2.61 | (1.02–6.64) | |
ATG16Lrs10210302 | 0.001 ** | ||||||
TT | 6 (4.7%) | 21 (16.3%) | Reference | Reference | |||
CT | 75 (58.1%) | 52 (40.3%) | 5.05 | (1.91–13.37) | 5.14 | (1.94–13.65) | |
CC | 48 (37.2%) | 56 (43.4%) | 3.00 | (1.12–8.04) | 2.98 | (1.11–7.99) | |
ATG16Lrs1045100 | 0.003 ** | ||||||
TT | 49 (38.0%) | 58 (45.0%) | Reference | Reference | |||
CT | 74 (57.4%) | 52 (40.3%) | 1.68 | (1.00–2.83) | 1.74 | (1.03–2.93) | |
CC | 6 (4.7%) | 19 (14.7%) | 0.37 | (0.14–1.01) | 0.37 | (0.14–1.01) | |
AOSD (n = 127) | HC (n = 124) | p-value | Logistic regression | ||||
n (%) | n (%) | OR (95% CI) | p value | ||||
ATG16L1 haplotypes | 0.002 | ||||||
GG/TT/CC haplotype | 6 (4.7%) | 19 (15.3%) | 0.37 [0.14–0.997] | 0.049 * | |||
AG/CT/CT haplotype | 73 (57.5%) | 49 (39.5%) | 1.74 [1.02–2.95] | 0.040 * | |||
AA/CC/TT haplotype | 48 (37.8%) | 56 (45.2%) | Reference |
AOSD | |||||||
---|---|---|---|---|---|---|---|
AGCTCT + GGTTCC | AACCTT | p-Value | |||||
n | Median | IQR | n | Median | IQR | ||
LC3B mRNA | 45 | 1.1 | (1.1–4.3) | 26 | 0.5 | (0.5–1.2) | 0.026 * |
ATG16L mRNA | 45 | 2.0 | (2.0–8.1) | 26 | 1.2 | (1.2–2.6) | 0.088 |
Serum levels of IL-1 (pg/mL) | 44 | 1.7 | (1.7–4) | 26 | 1.4 | (1.4–5.4) | 0.947 |
Serum levels of IL-6 (pg/mL) | 44 | 354.4 | (354.4–1155.1) | 28 | 589.2 | (589.2–1138) | 0.208 |
Serum levels of IL-17A (pg/mL) | 31 | 180.1 | (180.1–559.5) | 18 | 252.5 | (252.5–637) | 0.272 |
Serum levels of IL-18 (pg/mL) | 52 | 945.0 | (945–6632.9) | 31 | 1778.9 | (1778.9–7418) | 0.519 |
Serum levels of TNF-α (pg/mL) | 44 | 143.3 | (143.3–573.8) | 28 | 219.0 | (219–581.3) | 0.529 |
Univariate Analysis | Multivariate Analysis | |||||
---|---|---|---|---|---|---|
OR | (95% CI) | p Value | OR | (95% CI) | p Value | |
Age | 0.99 | (0.97–1.02) | 0.603 | |||
Gender | ||||||
Male | ||||||
Female | 1.00 | (0.40–2.53) | 0.997 | |||
ATG16L1 | ||||||
AGCTCT + GGTTCC | ref. | ref. | ||||
AACCTT | 2.87 | (1.08–7.69) | 0.035 * | 3.25 | (1.15–9.14) | 0.026 * |
Rash | 1.07 | (0.35–3.22) | 0.907 | |||
Arthritis | 0.00 | (0.00– | 0.997 | |||
Sore throat | 1.87 | (0.74–4.75) | 0.188 | |||
Lymphadenopathy | 2.32 | (0.94–5.74) | 0.068 | |||
hepatospenomegaly | 2.25 | (0.48–10.53) | 0.303 | |||
Leukocytosis | 1.24 | (0.46–3.31) | 0.667 | |||
Liver dysfunction | 2.76 | (1.03–7.38) | 0.043 * | |||
Disease activity score | 1.08 | (0.76–1.54) | 0.662 | |||
ALT | 1.03 | (1.01–1.05) | 0.013 * | 1.03 | (1.00–1.05) | 0.018 * |
WBC | 1.00 | (1.00–1.00) | 0.718 | |||
Hemoglobin | 0.90 | (0.70–1.16) | 0.427 | |||
Platelet | 1.00 | (1.00–1.00) | 0.342 | |||
ESR | 1.00 | (0.99–1.01) | 0.747 | |||
CRP | 1.07 | (1.00–1.15) | 0.046 * | 1.06 | (0.98–1.15) | 0.119 |
Ferritin | 1.00 | (1.00–1.00) | 0.070 | |||
Serum levels of IL-1 (pg/mL) | 1.00 | (0.97–1.04) | 0.957 | |||
Serum levels of IL-6 (pg/mL) | 1.00 | (1.00–1.00) | 0.876 | |||
Serum levels of IL-17A (pg/mL) | 1.00 | (1.00–1.00) | 0.050 | |||
Serum levels of IL-18 (pg/mL) | 1.0003 | (1.00–1.001) | 0.040 * | |||
Serum levels of TNF-α (pg/mL) | 1.00 | (1.00–1.00) | 0.307 | |||
LC3-II mRNA | 1.01 | (0.98–1.05) | 0.402 | |||
ATG16L1 mRNA | 1.00 | (1.00–1.00) | 0.760 |
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Hung, W.-T.; Hung, S.-I.; Chen, Y.-M.; Hsieh, C.-W.; Chen, H.-H.; Tang, K.-T.; Chen, D.-Y.; Lan, T.-H. The Association of ATG16L1 Variations with Clinical Phenotypes of Adult-Onset Still’s Disease. Genes 2021, 12, 904. https://doi.org/10.3390/genes12060904
Hung W-T, Hung S-I, Chen Y-M, Hsieh C-W, Chen H-H, Tang K-T, Chen D-Y, Lan T-H. The Association of ATG16L1 Variations with Clinical Phenotypes of Adult-Onset Still’s Disease. Genes. 2021; 12(6):904. https://doi.org/10.3390/genes12060904
Chicago/Turabian StyleHung, Wei-Ting, Shuen-Iu Hung, Yi-Ming Chen, Chia-Wei Hsieh, Hsin-Hua Chen, Kuo-Tung Tang, Der-Yuan Chen, and Tsuo-Hung Lan. 2021. "The Association of ATG16L1 Variations with Clinical Phenotypes of Adult-Onset Still’s Disease" Genes 12, no. 6: 904. https://doi.org/10.3390/genes12060904
APA StyleHung, W. -T., Hung, S. -I., Chen, Y. -M., Hsieh, C. -W., Chen, H. -H., Tang, K. -T., Chen, D. -Y., & Lan, T. -H. (2021). The Association of ATG16L1 Variations with Clinical Phenotypes of Adult-Onset Still’s Disease. Genes, 12(6), 904. https://doi.org/10.3390/genes12060904