1. Introduction
Silage is a type of roughage, which is made of fermented grass or crops to enable long-term storage and a stable supply of feed. The fermentation quality of silage affects not only the feeding system and milk production but also diseases in dairy cows [
1]. For example, butyric acid, which is mainly produced by aerobic fermentation, can cause reduced dry matter intake [
2], leading to energy metabolism disorder, such as ketosis [
3,
4]. Therefore, examining the fermentation quality of silage is of great importance to determine whether and how to feed silage. There are two major approaches to examining the quality of silage fermentation: with chemical analysis and with sensory evaluation using human olfaction. Although the sensory evaluation can be performed in the field, its accuracy is limited. Chemical analysis, on the other hand, generally provides high accuracy by quantifying the fermentation products. However, chemical analysis requires expensive instruments and pretreatment procedures, resulting in time consumption and delayed results [
5]. In addition, in the case of wrapped silage, the aerobic fermentation proceeds from the moment that the wrap is opened. Therefore, there is a demand for a method to measure the quality of silage fermentation accurately on site.
As sensory evaluations are made on odors of silage, odor is one of the important aspects to determine the quality of silage fermentation. To measure such odors, gas chromatography (GC) is the most common approach, while it also has limitations for on-site measurements. The concept of artificial olfaction—also known as electronic nose (e-nose)—has been proposed using an array of chemical sensors [
6] consisting of multiple sensors with different chemical properties. Using this artificial olfaction, a wide range of studies have been reported on the identification, discrimination, and quantification of target odors. Since the size reduction of sensing elements through recent nanotechnology has made the artificial olfaction system small and mobile, potential applications including on-site measurements have been proposed in various fields, such as food, agriculture, environment, medicine, and healthcare [
7,
8,
9,
10,
11,
12,
13,
14].
In this study, we demonstrate that a nanomechanical sensor array can be utilized for differentiating the silage samples through their odors, especially volatile fatty acids (VFAs), which are one of the key indicators for the silage quality [
15]. We used a nanomechanical Membrane-type Surface stress Sensor (MSS) as a platform of artificial olfaction [
14,
16,
17]. By focusing on the relatively slow desorption behaviors of VFAs predicted according to the sorption kinetics of nanomechanical sensing [
18,
19] and dissociation nature of VFAs, we found that the trends of VFAs in moisture-rich odors can be clearly seen in the decay curve of the signals, regardless of the hydrophilicity or hydrophobicity of the receptor materials. Since the MSS array has various advantages on the on-site measurement [
14], MSS-based artificial olfaction provides a promising evaluation platform for the silage quality.
2. Materials and Methods
2.1. Materials
Polystyrene (PS), polymethyl methacrylate (PMMA), and poly(2,6-diphenyl-1,4-phenylene oxide) (known as Tenax) were purchased from Sigma-Aldrich Inc. and GL Science and used for receptor materials. N,N-dimethylformamide (DMF) was purchased from Kanto Chemical Co., Inc. and used as a solvent to prepare solutions of receptor materials for inkjet spotting. Acetic acid (ethanoic acid), propionic acid (propanoic acid), butyric acid (butanoic acid), valeric acid (pentanoic acid), and caproic acid (hexanoic acid) were purchased from Sigma-Aldrich Inc. (Tokyo, Japan), Tokyo Chemical Industry (Tokyo, Japan), FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan), Kanto Chemical Co., Inc. (Tokyo, Japan). All chemicals were used as received. MilliQ water (Merck MilliPore, Tokyo, Japan) was used as water vapor.
2.2. Plant Materials and Preparation of Silage
The whole-plant corn (Zea mays L.) at the yellow ripe stage, grown in a field at the National Institute of Livestock and Grassland Science (Nasushiobara, Tochigi, Japan), were harvested and chopped into a 32 mm theoretical length size using a forage harvester (Model-790MD; New Holland, New Holland, PA). The plant material was then ensiled in an underground silo. After ensiling, the silage samples with different fermentation quality were chosen and designated as S1-1, S1-2, and S1-3 (the upper part of the silo) and S2-1, S2-2, and S2-3 (the bottom part of the silo), respectively.
2.3. Chemical Analysis of Silage Samples
Silage homogenates were prepared as previously described [
20] with some modifications. Briefly, 100 mL of distilled water was added to 10 g (fresh weight) of silage material. The resulting solution was homogenized by using a laboratory homogenizer (Pro·media SH-IIM, Elmex). After 5 min of extraction, the sample was filtered through 5A filter paper (Advantec). The resulting eluate was treated with Amberlite (Amberlite IR120H
+, Tokyo Chemical Industry) and centrifuged at 20,000 ×
g for 5 min. The supernatant was filtered through a membrane filter (pore size 0.45 μm; Advantec) and analyzed with a high-performance liquid chromatograph (HPLC; JASCO Corporation) equipped with Shodex Raspak KC-811 column (8 mm × 300 mm; Showa Denko) and a UV spectrometer (detection wavelength was 450 nm). The column was maintained at 60 °C. The flow rate of the mobile phase (3 mmol L
•1 of HClO
4 aq.) was 1.2 mL min
•1. BTB solution (0.2 mmol L
•1 of bromothymol blue, 8 mmol L
•1 of Na
2HPO
4, and 2 mmol L
•1 of NaOH) was used as the reaction mixture.
The water content is 100 less the proportion of dry matter content (%). Dry matter weight of silage was determined with heating material at 60 °C for 48 h. The pH values of the silage extract were determined using a pH meter (Seven Excellence; Mettler-Toledo) attached to an electrode (InLab Expert Pro-ISM; Mettler-Toledo).
2.4. Fabrication of MSS
The construction of the MSS chip and its working principle has been previously reported (
Figure 1a) [
16,
17]. Briefly, MSS consists of a silicon membrane suspended by four bridges, composing a full Wheatstone bridge (
Figure 1a). In each bridge, piezoresistors were embedded through boron doping. Receptor materials (i.e., PS, PMMA, and Tenax) were coated on each membrane. When the target gas is introduced to MSS, the receptor layer deforms from sorption of target analytes, such as VFAs, generating surface stress [
14]. The surface stress on the membrane is transduced to the four piezoresistive bridges as amplified uniaxial stress, resulting in the changes in the electrical resistance of the piezoresistors embedded in the bridges. The MSS chips used in this study were purchased from NanoWorld AG, Switzerland and provided from Asahi Kasei Co., Ltd. Each receptor material was deposited directly on the membrane of MSS by using inkjet spotter (LaboJet-500SP, MICROJET Corporation, Nagano, Japan) with a nozzle (IJHBS-300, MICROJET Corporation). In the present study, we used commercially available polymers as receptor materials, which exhibit different chemical selectivity. Each receptor material was dissolved in DMF (1 mg mL
•1), and the solutions were deposited onto each channel of the MSS. A stage of the inkjet spotter was heated at 80 °C during the deposition to promote evaporation of DMF.
2.5. Sensing
To estimate the diffusion time constant
τs of each receptor material to each solvent vapor, we used a sensing measurement system according to our previous work [
19] as shown in
Figure 1b. The coated MSS chips were placed in a Teflon chamber, which was placed in an incubator with a controlled temperature of 30.00 ± 0.02 °C. The chamber was connected to a gas flow system: a purging line, an injection line, a mixing chamber, two mass flow controllers (MFCs), and a vial for solutions of VFAs (
Figure 1b). The vapor of VFAs was produced by bubbling carrier gas. As carrier and purging gases, pure nitrogen gas was used. The duration and the concentrations of the five different VFA vapors were precisely controlled using MFC-1 (injection line) at
Pa/
Po of 0.1, where
Pa and
Po denote the partial vapor pressure and saturated vapor pressure of the VFAs, respectively. Before measuring MSS signals, pure nitrogen gas was introduced into the chamber for at least 1 min to promote the desorption of molecules adsorbed in the previous measurement. Subsequently, MFC-1 was switched on/off every 10 s with a controlled total flow rate of 100 mL min
•1 using MFC-2 (purging line) for four injection-purge cycles. Sensing signals of MSS were measured with a bridge voltage of –1.0 V and recorded with a sampling rate of 20 Hz. The data collection program was designed using LabVIEW (NI Corporation).
To measure the silage samples, we used the MSS Standard Measurement module [
21] produced by the industry–academia–government collaboration framework called “MSS Alliance” and “MSS Forum” [
22,
23,
24]. The coated MSS chips were placed in a Teflon chamber in the MSS module. The chamber was connected to a gas flow system: a switching valve connected with injection and purging gas lines, a flow meter, and an aspiration pump. The sample and purge gas flows were controlled by the pump with a flow rate adjusted to 30 mL min
•1. Each silage sample was placed in 20 mL vial and was connected to the injection line. Before measuring MSS signals, pure nitrogen gas was introduced into the MSS module for at least 2 min. Subsequently, the switching valve was switched to the sampling line for 2 min and then switched back to the purging line for 8 min. Sensing signals of MSS were measured at the bridge voltage of –1.0 V and recorded at a sampling rate of 100 Hz.
2.6. VFA Profile in Headspace Gas
To measure the VFAs in the headspace gases of silage samples and aqueous solutions of VFAs, PTR-TOF-MS (PTR-TOF 6000 X2, Ionicon Analytik GmbH) equipped with Static Headspace Autosampler was used. The measurement setup was set according to the manufacture’s protocol. The ion source of PTR was operated at a current of 4 mA and a voltage of 145 V with the source-out voltage maintained at 78.56 V. The source valve operating was set at 51%. The voltage, pressure, and temperature of drift tube were maintained at 557 V, 2.8 mbar, and 70 °C, respectively. The
E/N value, where
E and N are the applied electric field and the number density of the gas in the drift tube (1 Td = 10
–17 V cm
2), respectively [
25], was approximately 101 Td. The mass spectrum was recorded in the mass range of
m/
z 9–400, and mass calibration was performed using two ion peaks, which are known exact masses, i.e., hydronium ion isotope (H
318O
+;
m/
z = 21.022) and diiodobenzene fragment (C
6H
4IH
+;
m/
z = 203.943). The count rate of primary ion H
3O
+, which is calculated from the count rate at
m/
z = 21.022 multiplied by 500, was ca. 1.0 × 10
8 count per second (cps) in this work. The raw mass spectrum obtained from PTR-MS was analyzed using the PTR-MS Viewer ver. 3.3.9.1.
2.7. Curve Fitting of the Signal Response
To estimate the diffusion time constant
τs, we used an analytical solution of nanomechanical sensing based on the sorption kinetics and viscoelastic behaviors as follows [
19]:
where
σsat. and α denote the amplitude of the signal and fitting parameter (see Ref. [
19] for more detail);
τr is the time constant of the stress relaxation for viscoelastic behaviors of receptor materials;
T and
n are the duration and the number of injection/purge cycles. The analytical solution derived for multiple injection/purge cycles (Equation (1)) allows us to extract fitting parameters of the current measurements more accurately than previous single injection–purge model [
18,
19]. To extract values of receptor material properties and diffusion time constant of gases from the experimental data, we used least squares methods with trust region reflective algorithm using Python 3 with SciPy module according to our previous work [
19];
σsat.,
τs,
τr,
EU/
ER, and
t0 were extracted using Equation (1) (see Ref. [
19] for more detail).
2.8. Pattern Recognition Analysis
To discriminate the silage samples, principal component analysis (PCA) was used for reducing dimensionality of the dataset. By projecting the data onto a lower-dimensional space, one can visually recognize each silage sample according to the cluster separation. The following parameters
Sij were extracted from each MSS response as features for PCA:
where
Sj(
t) and
t0 denote a signal output of the
jth receptor material at time
t and the time when the signal response starts to rise (
Figure 2). In this study, we chose four time points for
ti;
t1 =
t0 + 2 [s],
t2 =
t0 + 10 [s],
t3 =
t0 + 120 [s],
t4 =
t3 + 2 [s], and
t5 =
t3 + 10 [s]. Three sets of the five parameters were extracted. PCA was adopted using scikit-learn packages for Python.
4. Discussion
In the present study, we demonstrated the discrimination of different silage samples through their odors (i.e., headspace gases) measured with a nanomechanical sensor array. We focused on VFAs, such as acetic acid and butyric acid, produced during silage fermentation because these VFAs are one of the key indicators to assess the fermentation quality of silage [
2]. In the silage samples used in the present study, the series of VFAs, including propionic acid and valeric acid, were detected in their odors with PTR-TOF-MS (
Table 1), although valeric acid was not detected through chemical analysis (
Table S1). The concentrations of VFAs in the odors of one silage group were significantly different from those in the other group of silage, while the concentrations of VFAs in the same group were at similar levels. When these silage samples including water vapor were measured with an MSS array coated with hydrophobic PS, hydrophilic PMMA, and popular trapping material Tenax, the signal responses showed different trends (
Figure 3 and
Figure 4). By extracting five features from the responses of the MSS coated with each receptor material, the silage samples and water were clearly discriminated with PCA (
Figure 5).
In the field of artificial olfaction including MSS-based systems, various feature extraction methods have been proposed [
27,
28]. We have also reported that it is possible to identify and quantify various analytes using features extracted from their outputs within a couple of seconds of the rising and decay curves [
28,
29,
30,
31]. In the present silage samples, however, the features extracted from the beginning of the rising curves (e.g., at 2 s after sample injection,
t1) cannot be effectively used for the discrimination of samples probably because of less correlation with their concentrations of VFAs (
Figure 4). In contrast to the rising curves, the features extracted from the decay curves (i.e.,
t4 and
t5) clearly show the significant differences reflecting their concentrations of VFAs in silage samples (
Figure 4). While the hydrophobic receptors (i.e., PS and Tenax) yield clear differences at
t2–
t5 (
Figure 4a,c), the hydrophilic PMMA does not show the significant differences during the sampling process (i.e., rising curve at
t1–
t3) (
Figure 4b). Since the major component of the silage headspace gases is water vapor, it is suggested that the rising curves of PMMA are strongly influenced by the water vapor concentrations rather than the differences in the concentrations of VFAs in silage vapors.
To evaluate the trends of silage odors in the signal responses, we also measured the signal responses of aqueous solutions of VFAs varying their concentrations. It is noteworthy that the output of PS at
t1 and the outputs of PMMA at
t1–
t3 tend to be negatively correlated with their concentrations (
Figure 6a,b), probably reflecting the decrease in water vapor with increasing VFAs in water, according to Raoult’s law. This trend was also observed in the signal responses of silage samples although it was not a linear correlation with the concentrations of VFAs because mole fraction of water in the silage samples can be varied by not only VFAs but also non-volatile compounds such as non-volatile lactic acid. In contrast to the sample injection period (i.e., rising curve), the outputs at
t4 and
t5 showed strong correlation with each VFA concentration (
Figure 6). The reason for the different output trends in the rising and decay curves in
Figure 6 can be attributed partially to the slow desorption of VFAs. According to the estimated diffusion time constant
τs (
Figure 7), some of the VFAs obtained relatively large time constants than that of water, resulting in the asymmetric responses of slow desorption VFAs.
In contrast to the above-mentioned VFAs, other VFA vapors obtained relatively small
τs (
Figure 7), resulting in the symmetric responses (
Figure S6). However, the responses to the aqueous solutions of these VFAs also exhibit asymmetric behavior (
Figure 6). Since the asymmetric responses occur only in the presence of water vapor, VFAs in the receptor layer would dissociate into ionic forms in the presence of water. The sensing responses to VFAs in the presence of water can include the following reactions:
where g and s in parenthesis denote the molecule in the gas phase and in the solid phase (i.e., in the receptor layer), respectively. The potential scheme is as follows (
Figure 8): (i) during injection process, the sorption of water and VFAs represented by Equations (4) and (5) contributes to the deformation of a receptor layer, while the dissociation process in Equation (6) does not affect the deformation (i.e., does not affect the signal response); (ii) during the purge process, the concentrations of VFAs and water in the receptor layer decrease because of the dissociation process in Equation (6), resulting in the slow desorption of water and VFAs, i.e., a delay in the desorption.
In conclusion, we have demonstrated that an MSS array can discriminate silage samples through their odors in terms of VFAs as indicators. Focusing on the relatively slow desorption behaviors and dissociation nature of VFAs, the resultant large diffusion time constants can be effectively utilized for the discrimination of silage samples. In other words, we have shown that the sensing signal outputs of MSS in the relatively late period in the purge process can be utilized for detecting, identifying, and monitoring various targets in complex mixtures of odors, such as VFAs in silage. This approach should be applicable to other targets such as agricultural and biological aqueous samples because such samples tend to contain gas species with relatively slow desorption behavior. Further, since nanomechanical sensors including MSS can utilize almost any material as a receptor layer, one can select/design/synthesize receptor materials that exhibit distinct features in a certain period during adsorption and/or desorption.
Although the precise determination of the fermentation quality of silage requires not only VFAs but also non-volatile lactic acid, total nitrogen, volatile basic nitrogen, and water content [
2], the amounts of VFAs in silage can provide additional information on feed design to maintain the conditions of dairy cows; the amount of butyric acid is related to the probability of ketosis occurrence as well as the activity of Clostridium. Moreover, using precisely selected receptor materials, it has a possibility to measure the volatile basic nitrogen through their odors. The decrease of moisture according to Raoult’s law can also be detected by using hydrophilic receptors, as can be seen in
Figure 4b. Therefore, the artificial olfaction system may allow us to evaluate non-volatile components such as lactic acid indirectly by measuring water contents. Machine learning may also support such approaches by highlighting subtle features that may not necessarily appear at specific time points. It should be emphasized that the artificial olfaction system does not require expensive instruments and pre-treatment, such as water extraction, which are used for the conventional chemical analysis, and hence, it has a great potential for on-site evaluation of silage fermentation quality.