Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collections and Isolation
2.2. Morphological Studies
2.3. DNA Extraction, PCR Amplification and Sequencing
2.4. Sequence Alignment and Phylogenetic Analyses
3. Results
3.1. Phylogenetic Analysis
3.2. Taxonomy
3.2.1. Stictidaceae Fr. (as ‘Stictei’), Summa Veg. Scand., Sectio Post. (Stockholm): 345 (1849) Amend
3.2.2. Fitzroyomyces Crous, Persoonia 39: 389 (2017)
3.2.3. Ostropomyces Thiyagaraja, Lücking, Ertz and K.D. Hyde, in Thiyagaraja, Lücking, Ertz, Karunarathna, Wanasinghe, Lumyong and Hyde, Journal of Fungi 7(no. 105): 11 (2021)
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Strain Number | LSU | ITS | mtSSU |
---|---|---|---|---|
Absconditella sphagnorum | M24 | EU940095 | - | EU940247 |
Absconditella sphagnorum | Palice 3820 | AY300825 | - | AY300873 |
Acarosporina microspora | AFTOL-ID 78 | AY584643 | DQ782834 | AY584612 |
Carestiella socia | GG2410 | - | AY661687 | AY661677 |
Carestiella socia | GG2437a | - | AY661682 | AY661678 |
Carestiella socia | Wedin 7194 | - | - | JX266155 |
Chromatochlamys muscorum | Palice 8634 | AY607731 | - | AY607743 |
Cryptodiscus cladoniicola | RP160 | KY661653 | KY661620 | KY661675 |
Cryptodiscus cladoniicola | RP159 | KY661652 | KY661619 | KY661674 |
Cryptodiscus epicladonia | RP208 T | - | KY661628 | KY661680 |
Cryptodiscus foveolaris | EB155 | - | FJ904673 | FJ904695 |
Cryptodiscus gloeocapsa | EB93 | - | FJ904674 | FJ904696 |
Cryptodiscus incolor | EB164 | - | FJ904675 | FJ904697 |
Cryptodiscus muriformis | H.B. 6773 | MG281963 | MG281963 | MG281973 |
Cryptodiscus pallidus | EB173 | - | FJ904680 | FJ904702 |
Cryptodiscus pallidus | EB152 | - | FJ904679 | FJ904701 |
Cryptodiscus pini | EB181 | - | FJ904684 | FJ904706 |
Cryptodiscus pini | EB178 | - | FJ904683 | FJ904705 |
Cryptodiscus tabularum | CO205 | - | FJ904690 | FJ904712 |
Cryptodiscus tabularum | EB169 | - | FJ904689 | FJ904711 |
Cyanodermella asteris | 03HOR06-2-4 T | KT758843 | KT758843 | |
Cyanodermella banksiae | CPC:32105 T | NG_064548 | NR_159835 | - |
Cyanodermella oleoligni | CBS 140345 T | NG_058973 | NR_153930 | KX999144 |
Cyanodermella viridula | EB146 | HM244763 | - | HM244739 |
Eriospora leucostoma | CPC:35594 | MT223890 | MT223795 | - |
Fitzroyomyces cyperacearum | MFLU 18-0695b | MK499361 | MK499349 | - |
Fitzroyomyces cyperacearum | CBS 143170 T | NG_058513 | NR_156387 | - |
Fitzroyomyces hyaloseptisporus | MFLUCC 21-0111 T | MZ868921 | MZ868916 | MZ868911 |
Stictis pandanicola | HKAS 96206 T | MH260319 | MH275085 | - |
Geisleria sychnogonoides | Caceres and Aptroot 13560 (ABL) | KC689752 | - | KC689751 |
Geisleria sychnogonoides | 70627 | KF220304 | - | KF220306 |
Glomerobolus gelineus | JK 5584C | DQ247798 | - | DQ247783 |
Glomerobolus gelineus | AFTOL-ID 1349 | - | DQ247782 | DQ247784 |
Hormodochis aggregata | CPC 30683T | MN317280 | NR_166307 | - |
Hormodochis melanochlora | CBS 138861 T | NG_070381 | NR_165507 | - |
Ingvariella bispora | MALich 15288 | HQ659184 | - | HQ659173 |
Ingvariella bispora | BCNLich 17183 | HQ659185 | - | HQ659174 |
Neofitzroyomyces nerii | CBS 145088 T | NG_068278 | NR_161144 | - |
Neostictis nigricans | MFLU 18-1380 T | MT214610 | MT310654 | - |
Orceolina kerguelensis | Søchting 9398(C) | AY212830 | AY212814 | AY212853 |
Ostropa barbara | SW071 (S) | HM244773 | HM244773 | HM244752 |
Ostropa barbara | S F302817 | MG281965 | MG281965 | MG281974 |
Ostropomyces pruinosellus | MFLU 20-0538 T | MW400966 | MW400964 | |
Ostropomyces pruinosellus | MFLUCC 21-0112 | MZ868917 | MZ868912 | MZ868907 |
Ostropomyces pruinosellus | MFLU 21-0115 | MZ868918 | MZ868913 | MZ868908 |
Ostropomyces thailandicus | MFLU 20-0539 T | MW397060 | MW400967 | - |
Ostropomyces thailandicus | MFLUCC 21-0113 | MZ868919 | MZ868914 | MZ868909 |
Ostropomyces thailandicus | MFLU 21-0116 | MZ868920 | MZ868915 | MZ868910 |
Phacidiella alsophilae | CPC:37041 T | MT373344 | MT373361 | - |
Placopsis perrugosa | KS137 | KU844613 | KU844737 | KU844549 |
Robergea cubicularis | G.M. 2017-10-12.1 | MN833317 | MN833317 | - |
Robergea cubicularis | G.M. 2013-05-09.1 | KY611899 | KY611899 | - |
Schizoxylon albescens | GG2443a | AY661690 | AY661690 | AY661681 |
Schizoxylon berkeleyanum | S F209682 | MG281966 | MG281966 | MG281975 |
Schizoxylon gilenstamii | S F300892 | MG281968 | MG281968 | MG281977 |
Sphaeropezia leucocheila | PDD:98299 T | MK547099 | MK547090 | MK547101 |
Sphaeropezia lyckselensis | EB-2012a | JX266158 | - | JX266156 |
Sphaeropezia mycoblasti | EB-2012b | JX266159 | - | JX266157 |
Sphaeropezia shangrilaensis | MFLU 20-0537 T | MW400965 | MW400955 | MW400962 |
Stictis anhuiensis | HOU1233M | KX447623 | - | KX447625 |
Stictis anhuiensis | HOU1233 | KX447622 | - | KX447624 |
Stictis brunnescens | GG2359 | AY661688 | AY661688 | AY661679 |
Stictis confusa | Wedin 7070 | - | NR_121318 | DQ401141 |
Stictis mollis | MW7200 | AY527313 | AY527313 | - |
Stictis mollis | GG2445a | AY527318 | AY527318 | - |
Stictis populorum | GG2610a | AY527327 | AY527327 | AY527356 |
Stictis populorum | GG2618 T | AY527331 | AY527331 | AY527360 |
Stictis radiata | GG2449a | AY527308 | AY527308 | - |
Stictis radiata | MW6493 | AY527309 | AY527309 | - |
Stictis urceolatum | LT21500 | AY661686 | AY661686 | AY661676 |
Thelenella antarctica | Lumbsch 19006a (F) | AY607739 | - | AY607749 |
Trapelia placodioides | KS163 | KU844623 | KU844758 | KU844568 |
Trinathotrema stictideum | F:Luecking 17541b | - | - | GU380288 |
Trinathotrema stictideum | F:Luecking 28093 | - | - | GU380287 |
Xyloschistes platytropa | AFTOL-ID 4891 | KJ766680 | - | KJ766517 |
Species | Strain | Apothecia (μm) | Exciple (μm) | Paraphyses (μm) | Asci (μm) | Ascospores (μm) | Septation | Reference |
---|---|---|---|---|---|---|---|---|
F. cyperacearum | MFLU 17–1480 | 201–260 × 210–310 | 17–70, textura intricata | 1.3–3, aseptate | 110–150 × 10–20 | 100–145 × 2.5–3.5, eguttulate | 17–21 | [36] |
F. hyaloseptisporus | MFLU 21–0114 | 140–200 × 150–200 | 6–20, textura angularis | 1–3, septate | 165–200 × 10–25 | 150–200 × 3.5–6, finely guttulate | up to 58 | this study |
F. pandanicola | HKAS 96206 | 350–410 × 520–650 | 27–46, textura epidermoidea | 0.8–1.1, aseptate | 160–240 × 7.5–23 | 190–265 × 4–5, eguttulate | up to 40 | [25] |
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Wei, D.-P.; Wanasinghe, D.N.; Gentekaki, E.; Thiyagaraja, V.; Lumyong, S.; Hyde, K.D. Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand. J. Fungi 2021, 7, 880. https://doi.org/10.3390/jof7100880
Wei D-P, Wanasinghe DN, Gentekaki E, Thiyagaraja V, Lumyong S, Hyde KD. Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand. Journal of Fungi. 2021; 7(10):880. https://doi.org/10.3390/jof7100880
Chicago/Turabian StyleWei, De-Ping, Dhanushka N. Wanasinghe, Eleni Gentekaki, Vinodhini Thiyagaraja, Saisamorn Lumyong, and Kevin D. Hyde. 2021. "Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand" Journal of Fungi 7, no. 10: 880. https://doi.org/10.3390/jof7100880
APA StyleWei, D. -P., Wanasinghe, D. N., Gentekaki, E., Thiyagaraja, V., Lumyong, S., & Hyde, K. D. (2021). Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand. Journal of Fungi, 7(10), 880. https://doi.org/10.3390/jof7100880