The Replication Licensing System

A special issue of Biology (ISSN 2079-7737). This special issue belongs to the section "Cell Biology".

Deadline for manuscript submissions: 31 August 2025 | Viewed by 12795

Special Issue Editor


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Guest Editor
Centre for Gene Regulation & Expression, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
Interests: DNA replication; replicated chromatid cohesion; DDK and Xenopus cell-free extract

Special Issue Information

Dear Colleagues,

The reconstitution of eukaryotic DNA replication in vitro, together with the great advances in our structural understanding of the many discrete steps required for DNA replication initiation afforded by the advent of increasingly higher resolution cryo-EM, have provided us with a far greater understanding of the eukaryotic DNA replication process than we could ever have envisaged just a decade ago.

The MCM (MiniChromosome Maintenance) proteins were first identified in budding yeast almost 40 years ago. The key to genome duplication in eukaryotes is the MCM2-7 heterohexamer: MCM2-7 forms the core of the CMG replicative helicase that unwinds DNA during the S phase to facilitate its replication.

MCM2-7 is first loaded onto chromatin as an inactive double hexamer at the sites of potential replication initiation, referred to as replication origins, during the late M and G1 phases; this MCM2-7 loading 'licenses' an origin to support one round of replication initiation in the upcoming S phase. The loading of MCM2-7 onto replication origins, a process known as 'replication licensing', requires three additional factors: ORC—the origin recognition complex, CDC6, and CDT1. Further to replication licensing, each of these factors play additional roles in the control of cell cycle progression, in processes as diverse as transcriptional regulation, the establishment of chromatid cohesion, kinetochore formation, and cytokinesis. During the S phase the MCM2-7 double hexamers are split and activated to form the CMG replicative helicase and following replication initiation CMG facilitates replication elongation as part of the replication fork. Upon replication termination, MCM2-7 proteins are removed from chromatin in a ubiquitylation-dependent manner. This dynamic association of MCM2-7 with chromatin once per cell cycle controls genome duplication and thus contributes to the maintenance of genomic stability.

The mutation or misregulation of the replication licensing proteins can generate replication stress, which results in genomic instability and has been indicated in the aetiology of human diseases: the development of cancer and the developmental disorder Meier–Gorlin Syndrome. Pharmacological intervention targeted at the replication licensing system may therefore be of considerable interest in ameliorating these disease states. Of particular interest is the distinct response of cancer and somatic cells to the inhibition of replication licensing.

In this Special Issue, to provide a complete description of the role of the replication licensing factors during the eukaryotic cell cycle, we encourage the submission of manuscripts covering all aspects of the replication licensing system, from the initiation of DNA replication, through the non-licensing roles of the replication licensing factors, to the discussion of the role of the misregulation of the replication licensing system in disease and the potential for the development of therapeutic intervention.

Dr. Peter J. Gillespie
Guest Editor

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Keywords

  • cell cycle
  • DNA replication
  • genome stability
  • replication licensing
  • MCM2-7
  • ORC
  • Cdc6
  • CDT1
  • cancer
  • Meier-Gorlin syndrome

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Published Papers (6 papers)

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Review

19 pages, 2111 KiB  
Review
Assembly, Activation, and Helicase Actions of MCM2-7: Transition from Inactive MCM2-7 Double Hexamers to Active Replication Forks
by Zhiying You and Hisao Masai
Biology 2024, 13(8), 629; https://doi.org/10.3390/biology13080629 - 17 Aug 2024
Viewed by 1278
Abstract
In this review, we summarize the processes of the assembly of multi-protein replisomes at the origins of replication. Replication licensing, the loading of inactive minichromosome maintenance double hexamers (dhMCM2-7) during the G1 phase, is followed by origin firing triggered by two serine–threonine kinases, [...] Read more.
In this review, we summarize the processes of the assembly of multi-protein replisomes at the origins of replication. Replication licensing, the loading of inactive minichromosome maintenance double hexamers (dhMCM2-7) during the G1 phase, is followed by origin firing triggered by two serine–threonine kinases, Cdc7 (DDK) and CDK, leading to the assembly and activation of Cdc45/MCM2-7/GINS (CMG) helicases at the entry into the S phase and the formation of replisomes for bidirectional DNA synthesis. Biochemical and structural analyses of the recruitment of initiation or firing factors to the dhMCM2-7 for the formation of an active helicase and those of origin melting and DNA unwinding support the steric exclusion unwinding model of the CMG helicase. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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12 pages, 1586 KiB  
Review
The Role of the MCM2-7 Helicase Subunit MCM2 in Epigenetic Inheritance
by Jing Jia and Chuanhe Yu
Biology 2024, 13(8), 572; https://doi.org/10.3390/biology13080572 - 29 Jul 2024
Viewed by 1148
Abstract
Recycling histone proteins from parental chromatin, a process known as parental histone transfer, is an important component in chromosome replication and is essential for epigenetic inheritance. We review recent advances in our understanding of the recycling mechanism of parental histone H3-H4 tetramers (parH3:H4tet), [...] Read more.
Recycling histone proteins from parental chromatin, a process known as parental histone transfer, is an important component in chromosome replication and is essential for epigenetic inheritance. We review recent advances in our understanding of the recycling mechanism of parental histone H3-H4 tetramers (parH3:H4tet), emphasizing the pivotal role of the DNA replisome. In particular, we highlight the function of the MCM2-7 helicase subunit Mcm2 as a histone H3-H4 tetramer chaperone. Disruption of this histone chaperone’s functions affects mouse embryonic stem cell differentiation and can lead to embryonic lethality in mice, underscoring the crucial role of the replisome in maintaining epigenomic stability. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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14 pages, 1849 KiB  
Review
The MCM2-7 Complex: Roles beyond DNA Unwinding
by Brooke D. Rankin and Susannah Rankin
Biology 2024, 13(4), 258; https://doi.org/10.3390/biology13040258 - 13 Apr 2024
Cited by 3 | Viewed by 2458
Abstract
The MCM2-7 complex is a hexameric protein complex that serves as a DNA helicase. It unwinds the DNA double helix during DNA replication, thereby providing the single-stranded replication template. In recent years, it has become clear that the MCM2-7 complex has additional functions [...] Read more.
The MCM2-7 complex is a hexameric protein complex that serves as a DNA helicase. It unwinds the DNA double helix during DNA replication, thereby providing the single-stranded replication template. In recent years, it has become clear that the MCM2-7 complex has additional functions that extend well beyond its role in DNA replication. Through physical and functional interactions with different pathways, it impacts other nuclear events and activities, including folding of the genome, histone inheritance, chromosome segregation, DNA damage sensing and repair, and gene transcription. Collectively, the diverse roles of the MCM2-7 complex suggest it plays a critical role in maintaining genome integrity by integrating the regulation of DNA replication with other pathways in the nucleus. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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24 pages, 2158 KiB  
Review
A Decade of Discovery—Eukaryotic Replisome Disassembly at Replication Termination
by Rebecca M. Jones, Alicja Reynolds-Winczura and Agnieszka Gambus
Biology 2024, 13(4), 233; https://doi.org/10.3390/biology13040233 - 31 Mar 2024
Cited by 2 | Viewed by 2289
Abstract
The eukaryotic replicative helicase (CMG complex) is assembled during DNA replication initiation in a highly regulated manner, which is described in depth by other manuscripts in this Issue. During DNA replication, the replicative helicase moves through the chromatin, unwinding DNA and facilitating nascent [...] Read more.
The eukaryotic replicative helicase (CMG complex) is assembled during DNA replication initiation in a highly regulated manner, which is described in depth by other manuscripts in this Issue. During DNA replication, the replicative helicase moves through the chromatin, unwinding DNA and facilitating nascent DNA synthesis by polymerases. Once the duplication of a replicon is complete, the CMG helicase and the remaining components of the replisome need to be removed from the chromatin. Research carried out over the last ten years has produced a breakthrough in our understanding, revealing that replication termination, and more specifically replisome disassembly, is indeed a highly regulated process. This review brings together our current understanding of these processes and highlights elements of the mechanism that are conserved or have undergone divergence throughout evolution. Finally, we discuss events beyond the classic termination of DNA replication in S-phase and go over the known mechanisms of replicative helicase removal from chromatin in these particular situations. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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14 pages, 1722 KiB  
Review
Chromatin’s Influence on Pre-Replication Complex Assembly and Function
by Hina Ahmad, Neha Chetlangia and Supriya G. Prasanth
Biology 2024, 13(3), 152; https://doi.org/10.3390/biology13030152 - 27 Feb 2024
Viewed by 2311
Abstract
In all eukaryotes, the initiation of DNA replication requires a stepwise assembly of factors onto the origins of DNA replication. This is pioneered by the Origin Recognition Complex, which recruits Cdc6. Together, they bring Cdt1, which shepherds MCM2-7 to form the OCCM complex. [...] Read more.
In all eukaryotes, the initiation of DNA replication requires a stepwise assembly of factors onto the origins of DNA replication. This is pioneered by the Origin Recognition Complex, which recruits Cdc6. Together, they bring Cdt1, which shepherds MCM2-7 to form the OCCM complex. Sequentially, a second Cdt1-bound hexamer of MCM2-7 is recruited by ORC-Cdc6 to form an MCM double hexamer, which forms a part of the pre-RC. Although the mechanism of ORC binding to DNA varies across eukaryotes, how ORC is recruited to replication origins in human cells remains an area of intense investigation. This review discusses how the chromatin environment influences pre-RC assembly, function, and, eventually, origin activity. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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12 pages, 2582 KiB  
Review
The Origin Recognition Complex: From Origin Selection to Replication Licensing in Yeast and Humans
by Bik-Kwoon Tye and Yuanliang Zhai
Biology 2024, 13(1), 13; https://doi.org/10.3390/biology13010013 - 25 Dec 2023
Cited by 2 | Viewed by 2414
Abstract
Understanding human DNA replication through the study of yeast has been an extremely fruitful journey. The minichromosome maintenance (MCM) 2–7 genes that encode the catalytic core of the eukaryotic replisome were initially identified through forward yeast genetics. The origin recognition complexes (ORC) that [...] Read more.
Understanding human DNA replication through the study of yeast has been an extremely fruitful journey. The minichromosome maintenance (MCM) 2–7 genes that encode the catalytic core of the eukaryotic replisome were initially identified through forward yeast genetics. The origin recognition complexes (ORC) that load the MCM hexamers at replication origins were purified from yeast extracts. We have reached an age where high-resolution cryoEM structures of yeast and human replication complexes can be compared side-by-side. Their similarities and differences are converging as alternative strategies that may deviate in detail but are shared by both species. Full article
(This article belongs to the Special Issue The Replication Licensing System)
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