Drosophila Models in Autophagy and Aging

A special issue of Cells (ISSN 2073-4409). This special issue belongs to the section "Autophagy".

Deadline for manuscript submissions: 15 February 2025 | Viewed by 5073

Special Issue Editors


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Guest Editor
Section of Cell Biology & Biophysics, Department of Biology, School of Science, National & Kapodistrian University of Athens (NKUA), Panepistimiopolis, Zografou, 15701 Athens, Greece
Interests: development; Drosophila models of human diseases; oogenesis; metabolic disorders; neurological pathologies; programmed cell death; proteasome
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Guest Editor
Section of Cell Biology & Biophysics, Department of Biology, School of Science, National and Kapodistrian University of Athens (NKUA), Panepistimiopolis, Zografou, 15701 Athens, Greece
Interests: development; cancer; chemotherapy; metastasis; programmed cell death; metabolism; Drosophila aging; brain signaling; proteasome
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
UMass Chan Medical School, Molecular, Cell and Cancer Biology (MCCB), 364 Plantation Street, Worcester, MA 01605, USA
Interests: autophagy; metabolism; aging; Drosophila genetic models; development; apoptosis; proteasome; solute carriers

Special Issue Information

Dear Colleagues,

Drosophila melanogaster is an established and widely accepted model organism for developmental studies that possesses unique advantages, such as a short lifespan, a simple but evolutionarily conserved nervous system, and a wide variety of transgenic strains and genetic tools. This powerful and advanced genetic toolbox allows for the rapid and reliable generation of transgenic flies, in which the manipulation (loss-of-function, or over-expression) of the gene(s) of interest is performed with unique and unprecedented precision in specific cells, tissues, and organs. Most importantly, over 75% of disease-associated genes in humans have corresponding orthologs in flies, and, remarkably, all key-molecular pathways are highly conserved, with many organ systems in mammals having equivalent systems in Drosophila.

As Drosophila cells age, they lose their ability to maintain proper protein folding and to eliminate misfolded proteins, thus leading to the accumulation of abnormal protein aggregates, and a loss of protein homeostasis (proteostasis). Two major protein degradation systems, the ubiquitin–proteasome system (UPS) and the autophagy system (ATGS), are activated to avoid proteotoxicity, but during aging they are severely impaired. The Atg genes and the pathways that regulate autophagy are highly conserved between Drosophila and many animal species, including mammals, and critical discoveries about the mechanism of autophagy were identified and characterized for the first time in Drosophila. Altogether, the loss of proteostasis is considered as a hallmark of aging and seems to accelerate the onset of neurodegenerative diseases. Flies exhibit aging behaviors comparable to human aging, and, therefore, many transgenic models of specific neurodegenerative pathologies have been produced to elucidate the role(s) of autophagy in disease initiation, progression, and therapy response(s). Finally, evidence is being accumulated to strongly suggest that the (mid-)gut microbiome also critically contributes to longevity, in all species examined thus far.

Hence, high levels of genomic/genetic conservation combined with a wealth of cellular, genetic, and molecular resources render Drosophila an ideal model for studying neurodegeneration in vivo, and for illuminating the effects of aging in a significantly more reasonable time frame. Taken together, all types of studies related to autophagy, neurodegeneration, and aging in Drosophila are of major interest to this Special Issue.

Dr. Athanassios D. Velentzas
Dr. Dimitrios J. Stravopodis
Dr. Panagiotis D. Velentzas
Guest Editors

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Keywords

  • autophagy
  • apoptosis
  • brain–gut axis
  • brainopathies
  • development
  • Drosophila model of human diseases
  • microbiome
  • mitophagy
  • necrosis
  • neurodegenerative diseases
  • proteostasis
  • signaling
  • ubiquitin–proteasome system

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Published Papers (3 papers)

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21 pages, 2663 KiB  
Review
An Introductory Guide to Using Bloomington Drosophila Stock Center and FlyBase for Aging Research
by Xiangzhong Zheng
Cells 2024, 13(14), 1192; https://doi.org/10.3390/cells13141192 - 14 Jul 2024
Cited by 1 | Viewed by 1420
Abstract
Studies on numerous species have demonstrated strikingly conserved mechanisms that determine the aging process, from yeasts to worms, flies, zebrafish, mice, and humans. The fruit fly Drosophila melanogaster is an excellent model organism for studying the biological basis of normal aging and etiology [...] Read more.
Studies on numerous species have demonstrated strikingly conserved mechanisms that determine the aging process, from yeasts to worms, flies, zebrafish, mice, and humans. The fruit fly Drosophila melanogaster is an excellent model organism for studying the biological basis of normal aging and etiology of age-related diseases. Since its inception in 1967, the Bloomington Drosophila Stock Center (BDSC) has grown into the largest collection of documented D. melanogaster strains (currently > 91,000). This paper aims to briefly review conserved mechanisms of aging and provides a guide to help users understand the organization of stock listings on the BDSC website and familiarize themselves with the search functions on BDSC and FlyBase, with an emphasis on using genes in conserved pathways as examples to find stocks for aging studies. Full article
(This article belongs to the Special Issue Drosophila Models in Autophagy and Aging)
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16 pages, 1656 KiB  
Review
Understanding Developmental Cell Death Using Drosophila as a Model System
by Ruchi Umargamwala, Jantina Manning, Loretta Dorstyn, Donna Denton and Sharad Kumar
Cells 2024, 13(4), 347; https://doi.org/10.3390/cells13040347 - 16 Feb 2024
Viewed by 2602
Abstract
Cell death plays an essential function in organismal development, wellbeing, and ageing. Many types of cell deaths have been described in the past 30 years. Among these, apoptosis remains the most conserved type of cell death in metazoans and the most common mechanism [...] Read more.
Cell death plays an essential function in organismal development, wellbeing, and ageing. Many types of cell deaths have been described in the past 30 years. Among these, apoptosis remains the most conserved type of cell death in metazoans and the most common mechanism for deleting unwanted cells. Other types of cell deaths that often play roles in specific contexts or upon pathological insults can be classed under variant forms of cell death and programmed necrosis. Studies in Drosophila have contributed significantly to the understanding and regulation of apoptosis pathways. In addition to this, Drosophila has also served as an essential model to study the genetic basis of autophagy-dependent cell death (ADCD) and other relatively rare types of context-dependent cell deaths. Here, we summarise what is known about apoptosis, ADCD, and other context-specific variant cell death pathways in Drosophila, with a focus on developmental cell death. Full article
(This article belongs to the Special Issue Drosophila Models in Autophagy and Aging)
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10 pages, 9947 KiB  
Brief Report
Transcription Factor Deformed Wings Is an Atg8a-Interacting Protein That Regulates Autophagy
by Marta Kołodziej, Panagiotis Tsapras, Alexander D. Cameron and Ioannis P. Nezis
Cells 2024, 13(22), 1897; https://doi.org/10.3390/cells13221897 - 17 Nov 2024
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Abstract
LC3 (microtubule-associated protein 1 light chain 3, called Atg8 in yeast and Drosophila) is one of the most well-studied autophagy-related proteins. LC3 controls the selectivity of autophagic degradation by interacting with LIR (LC3-interacting region) motifs also known as AIM (Atg8-interacting motifs) on [...] Read more.
LC3 (microtubule-associated protein 1 light chain 3, called Atg8 in yeast and Drosophila) is one of the most well-studied autophagy-related proteins. LC3 controls the selectivity of autophagic degradation by interacting with LIR (LC3-interacting region) motifs also known as AIM (Atg8-interacting motifs) on selective autophagy receptors that carry cargo for degradation. Although the function of Atg8 family proteins is primarily cytoplasmic, they are also enriched in the nucleus. Despite the accumulating evidence indicating the presence of Atg8 proteins in the nucleus, the mechanisms by which they are targeted to the nucleus, their interactions with nuclear components, and their nuclear role in remain poorly understood. Here, we used yeast two-hybrid screening, and we identified transcription factor Deformed wings (Dwg) as an Atg8a-interacting protein in Drosophila. Dwg-Atg8a interaction is LIR motif-dependent. We have created Dwg Y129A/I132A LIR mutant flies and shown that they exhibit elevated autophagy, improved resistance to oxidative stress, and starvation. Our results provide novel insights into the transcriptional regulation of autophagy in Drosophila. Full article
(This article belongs to the Special Issue Drosophila Models in Autophagy and Aging)
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