Taxonomy

Neotropical species of the genus Fannia remain poorly known despite their potential collection as biological evidence in criminal investigations. This is partly due to taxonomic difficulties and a lack of specialists. Identifying neotropical species of Fannia relies mainly on the classical morphological characters of adult males, as females show high similarity between species. Here, landmark-based geometric morphometrics of the wing could constitute an additional tool for associating adult females with conspecifics in this genus. In this study, we used a reference dataset of males belonging to ten putative species of Fannia from Colombia and molecular data to test this hypothesis. We found a strong wing shape sexual dimorphism, resulting in an almost perfect sex assignment based solely on this trait. However, the differences in wing shape between sexes were greater than those between species, making conspecific identification difficult. Our data show that wing shape could only feasibly be used for identifying adult males and females of F. lamosca, and males of F. dorsomaculata and F. pseudoconstricta. Low discrimination scores among remaining species may be partly explained by high intraspecific variation, slight wing shape differences among closely related species, or sampling bias. Although this study provides the first wing size and shape comparison among neotropical Fannia species, more samples and species are needed to validate these findings and identify the potential factors influencing this trait. Furthermore, the wing shape sexual dimorphism across Fannia species suggests different life-history strategies between sexes and possible genetic canalization mechanisms. Full article

This study addresses a critical issue in plant taxonomy and phylogeny: the relationship between archaeological materials and potentially analogous living populations. Given the current limitations in definitively establishing the identity between archaeological and contemporary materials, we propose an intermediate approach. This approach serves as a useful framework while scientific methods advance towards definitively assessing whether an archaeological wheat sample, approximately 5000 years old from Central Europe, belongs to the same species as a modern wheat currently endemic to Central Asia. This approach consolidates the taxonomic validity of both archaeological and living materials, allowing them to be treated as distinct taxa while preserving the possibility of future identification convergence. Triticum vulgare var. antiquorum, an archaeobotanical small-grained, free-threshing wheat, was originally described in 1865. The 1982 discovery of morphologically similar living wheat in Tajikistan raised questions about their taxonomic relationship. Our study reviews the nomenclature of both taxa, designating an illustration from the original description of T. vulgare var. antiquorum as the lectotype to align with the traditional concept of the name. We address the ambiguity surrounding “Triticum antiquorum” as used by Russian agronomists and botanists, proposing a more precise circumscription within the current systematic framework of the genus based on cytogenetic data. Consequently, we describe a new taxon, Triticum sphaerococcum subsp. antiquorum. The holotype, selected from material with available cytogenetic data and grown from Professor Udachin’s original Pamir (Tajikistan) collection, is preserved in the N.I. Vavilov All-Russian Institute of Plant Genetic Resources (WIR) collection. It is deposited at the I.M. Krasnoborov Herbarium of Central Siberian Botanical Garden SB RAS (NS), with an isotype at the WIR. This taxonomic revision and new subspecies designation provide a robust framework for reconciling archaeological and contemporary wheat diversity, advancing our understanding of wheat evolution and agricultural history. Full article

Based on molecular phylogenetic analyses, and also considering morphological characters, four new families are separated from the family Glomeraceae within the order Glomerales and the class Glomeromycetes. The revised family Glomeraceae comprises only four genera: the type genus Glomus, Complexispora, Sclerocarpum and Simiglomus. Septoglomeraceae fam. nov. comprises, besides Septoglomus, Funneliformis, Funneliglomus, Blaszkowskia and Viscospora. Sclerocystaceae fam. nov. is represented by the type genus Sclerocystis but also by Halonatospora, Oehlia, Parvocarpum, Rhizoglomus and Silvaspora. Kamienskiaceae fam. nov. encompasses Kamienskia, Microkamienskia and Epigeocarpum. Finally, Dominikiaceae fam. nov. includes the genera Dominikia, Macrodominikia gen. nov., Microdominikia, Nanoglomus and Orientoglomus. The genera Oehlia and Halonatospora form two other clades well separated from Silvaspora, Sclerocystis and Rhizoglomus and might represent two further families within Glomerales. This deeper separation is, in our opinion, fully supported by molecular phylogeny, but in view of the low numbers of taxa, the separation is not yet proposed at this stage of research progress. Full article

The deep-sea snailfish Careproctus bathycoetus Gilbert et Burke, 1912 was described a century ago from a single specimen caught at a depth of 3292 m in the Kuril Basin (southern Sea of Okhotsk, western North Pacific). Until now, it was known from the holotype only. Therefore, the capture of another specimen is of great interest and provides new data on the morphology and ecology of the species. The second known specimen was collected by the international expedition “SohoBio” (2015) at a depth of 3305 m in the Kuril Basin near the type locality. This study provides a description of a rare fish, which allows us to improve the diagnosis of the species. Differences from other deep-sea snailfishes from the North Pacific Ocean are also given. At a depth of 3292–3305 m, the species lives in extreme conditions: complete darkness, temperature at about 1.9 °C, water pressure about 3300 ton/m², low oxygen concentration, and low biomass of prey. Related Careproctus species can most likely be found in the abyssal depths of the neighboring Kuril–Kamchatka Trench. Full article

Ceratozamia chinantlensis sp. nov., a new cliff-dwelling cycad species from Sierra de La Chinantla, Oaxaca, Mexico, is described and compared with its congeners. The species is morphologically similar to Ceratozamia zoquorum and Ceratozamia santillanii, two geographically distant species, yet it is effortlessly distinguishable from its most proximally geographic congeners. Ceratozamia chinantlensis can be recognized based on several qualitative traits, such as its very coriaceous, long, linear to oblanceolate leaflets. Also, it has bronze-colored emerging leaves and mature leaves with articulations of a light copper color. Compared with C. zoquorum and C. santillanii, C. chinantlensis has significantly longer and wider leaflets. C. chinantlensis should be considered a critically threatened species due to its limited number of populations and individuals. Habitat destruction—historically through the extraction of Dioscorea mexicana and Vanilla planifolia, along with ongoing coffee and corn plantations—is an ongoing threat that narrows its distribution range. Full article

While there are millions of reptile images available online, they are not well organized and not easily findable, accessible, interoperable, or reproducible (FAIR). More importantly, they are not standardized and thus hardly comparable. Here we present a reference database of more than 14,000 standardized images of 1045 reptile species (969 lizard and 76 snake species) that are based on preserved specimens in 20 different collections, including 533 type species of genera and type specimens of 72 species. All images were taken with standardized views, including dorsal and ventral body shots as well as dorsal, ventral, and lateral views of the heads and other body parts. Although only 11 out of the 20 collections are cross-referenced in VertNet, some others are indexed in GBIF, and this fraction will certainly grow in the near future. The utility of this and similar image collections will further grow with additional material and further cross-referencing, e.g., to DNA sequence databases or citizen science projects. The images are searchable and freely available on Morphobank (Project 5121) and on Figshare. Full article

Confusion between the means and ends, specifically between technological achievements and their users, has been evident in taxonomy’s history since the end of the last century. Following a current of thought implicit in Anglo-Saxon culture, this trend aligns with the idea of inevitability. It is inevitable, so it is thought, that what a human organism can do, a machine will be able to do at some point in time. This will ultimately lead to dispensing with the human element for things they do not wish to do themselves. Despite certain misunderstandings about what has become known as the Turing Test, the general idea is to determine whether a machine can analyze data as meaningfully as a human does and make decisions based on that analysis. In the case of taxonomy, the initial aim of using machines was to efficiently replace a researcher for identification purposes. The situation later evolved to include the discovery of new entities in addition to identification. In this essay, I provide a brief overview of some milestones along this trajectory and its current state and discuss the influence of artificial intelligence (AI) in taxonomy. Full article

The genus Dickeya consists of Gram-negative bacteria capable of causing soft rot symptoms in plants, which involves tissue breakdown, particularly in storage organs such as tubers, rhizomes, and bulbs. These bacteria are ranked among the top ten most relevant phytopathogens and seriously threaten economically valuable crops and ornamental plants. This study employs a genomic analysis approach to taxonomically classify and characterize the resistome and virulome of two new strains, CCRMP144 and CCRMP250, identified as Dickeya dadantii. These strains were found to be the causative agents of soft rot symptoms in chili pepper (Capsicum spp.) and lettuce (Lactuca sativa), respectively, in the northeastern region of Brazil. The methodology employed in silico techniques, including tetra correlation search (TCS) and Average Nucleotide Identity (ANI) analysis, in association with a phylogenomic tree inference. TCS and ANI analysis showed that the studied strains belong to the Dickeya dadantii species. The phylogenomic analysis grouped the studied strains in the D. dadantii clade. The genomic characterization demonstrates 68 virulence genes, 54 resistances of biocide and heavy metal genes, and 23 antibiotic resistance genes. As far as we know, this is the first genomic study with Brazilian D. dadantii strains. This study demonstrates the efficacy to taxonomic classification and provides insights into the pathogenesis, host range, and adaptability of these strains which are crucial for the development of more effective management and control strategies for soft rot diseases. Full article

Members of the blowfly family (Calliphoridae) are usually the first insect species to arrive at a corpse, using the body as an oviposition site, and, as such, they are the most important group of insects used to estimate the post-mortem interval (PMI). PMI estimations are based on species-specific developmental timings; therefore, accurate species identification is crucial. Current identification methods are based on morphological characteristics, which are time-consuming and difficult to perform on damaged, immature specimens and closely related species. Advances have led to specimens being identified via a host of molecular techniques, mainly DNA sequencing. Although molecular identification is becoming increasingly more common, there is currently a lack of genetic data regarding UK Calliphoridae species. This study aimed to address this issue. We present the development and validation of an identification assay capable of differentiating six UK species (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, and Protophormia terranovae). The sequencing of six genes, including both nuclear (28S rRNA and Elongation factor 1 alpha) and mitochondrial markers (Cytochrome oxidase I and II, Cytochrome b and 16S rRNA) identified 298 species-specific single nucleotide polymorphisms (SNPs). Fifteen SNPs from six genes were chosen for inclusion in a SNaPshot™ multiplex assay. The developed assay is capable of differentiating the species based on between 4 and 12 SNPs. Validation following guidelines by the International Society of Forensic Genetics (ISFG) demonstrated the assay to be accurate, reproducible, sensitive, and specific. Full article

The ascidian fauna of the Bahamas remains grossly understudied. Here, we examined specimens of the genus Clavelina collected from four Bahamian islands using morphological observations and genetic barcoding. Only three species of Clavelina have been previously reported in the Caribbean: C. picta, C. oblonga, and C. puertosecensis. Here, we report C. picta and three species new to science: C. rochae, C. pawliki, and C. erwinorum. C. picta and C. pawliki were found in the northernmost island surveyed, while C. rochae and C. erwinorum were particularly prevalent on the southeastern Bahamian islands. A complete review of genetic barcoding data and morphological characters of accepted Clavelina species was performed. The unique combination of in vivo coloration, morphological characteristics, haplotypes, and species distribution supported the establishment of three new species, significantly adding to the diversity of the genus Clavelina in the Caribbean. Full article

Past efforts to identify and characterize minimally monophyletic groups (microgenera) by deconstructing larger bryophyte genera successfully determined 10 microgenera comprising the moss family Streptotrichaceae. Thirty other microgenera have also been found in the moss family Pottiaceae. A microgenus consists of one ancestral species and, optimally, four immediate descendant species, each of which shares exactly the same ancestral traits. To determine if microgenera were common, evidence of these in larger genera was garnered from published estimates of species per genus in other groups and from molecular cladograms in the moss family Pottiaceae. Both classical mesogenera and cladistically enlarged macrogenera exhibited an internal granularity of one to five species, either as multiple species below the inflection point in the hollow curve of logarithmic graphs of species per genus or as small groups of molecular cladogram branches. Microgenera are basic units of evolution. The constancy of size and monothecy of traits in microgenera give them properties that larger taxonomic groups lack. Sequences of microgenera monophyletic are easily concatenated, adaptational changes may be directly determined, self-similarity across scale allows extended scientific inferences, and traits can be associated with survival across millions of years of environmental perturbation. Full article

The genus Strumigenys is the third most diverse among ants, having been reviewed globally. Despite this comprehensive review, new species are frequently discovered in most biogeographic regions. Here, we describe two new species, Strumigenys itannae sp. nov. and Strumigenys xoko sp. nov., based on material collected in the Amazon and the Brazilian Atlantic Forest. Additionally, new records for S. castanea, S. metrix, and S. orchibia are provided, expanding the known distribution of these species. We discuss morphological variation in S. schulzi and provide biological notes that indicate some species within the schulzi group are arboreal inhabitants. We provided an identification key for the newly described species as an amendment to the identification key for the Neotropical Strumigenys. Full article

A reliable character system is crucial to taxonomy and systematics, and it promises valid downstream inferences, e.g., estimates of diversity and disparity, reconstruction of evolutionary history, and even stratigraphic correlations. Modern taxonomy and systematics of extant cockroaches requires an integrative study involving multiple lines of evidence with emphasis on genital and reproductive characteristics and molecular data. In contrast, many fossil cockroach taxa published recently are based solely on forewings. Many studies have shown that forewing-based taxa are questionable. In order to find out how much of the phylogenetic signal we could ascertain from venational similarity, and how confident we could be, this study used forewing characters to reconstruct phylogenies of the genera of well-recognized family-group taxa. The intuitively reconstructed phylogeny of 75 extant genera failed to recover those taxa or their relationships. Parsimony analyses of various datasets all yielded strong polyphyly and chaotic relationships. In conclusion, the forewing of cockroaches is not a universally competent character system. The underlying causes are the complicated nature of veins and the limitations of current analytical techniques. The uncertainty in forewing-based taxonomy and systematics has been underestimated in the literature. Forewing-based fossil taxa warrant re-evaluation; some of them are herein deemed nomina dubia in their current state. Full article

The genus Cernotina Ross, 1938 is represented in the southeastern United States by three nominal species: Cernotina calcea Ross, 1938, Cernotina spicata Ross, 1938, and Cernotina truncona Ross, 1947. Of all Cernotina species, only the larva of C. spicata has been described to date. The goal of this paper is to describe, illustrate, and diagnose the larva of C. truncona using ecologically associated specimens. In addition, we used publicly available mitochondrial DNA barcoding data to evaluate the genetic relationships of these species. The larvae of Cernotina truncona can be distinguished from those of C. spicata by differences in setal placement and number on the meso- and metanota, mandibular morphology, head width, and distal setation of the tarsi. The ultrastructure of the anal claw is figured, highlighting the novel finding of small spines on the concave margin of a larva of Cernotina. With this new description, just the second described larva from this genus, only C. calcea remains unknown in the southeastern United States. The information provided herein enables the in-depth study of the ecology and life history of this diminutive caddisfly. Full article

Brachynemurus bowlesi, sp. n. is a newly discovered myrmeleontid from the Sonoran Province, the northernmost subtropical region of Mexico. The new species fits within the Brachynemurus versutus subgroup, which now includes five species, all of them occurring in Mexico and the central and western United States. The new species may be identified by characteristics of the internal male genitalia, especially by a roof-like mediuncus, as well as the basal part of the 10th gonostyli, with paired processes in an acute angle and a shield-like expansion more evident in the dorsocaudal view. The formerly proposed synonymy of Brachynemurus mexicanus Banks, under B. versutus (Walker), is herein reinstated and supported. Full article

A new monotypic genus of Prodidominae, Paleotoca gen. n., is proposed to include one cave species collected in a paleoburrow and ferruginous caves from Quadrilátero Ferrífero, Minas Gerais, Brazil: Paleotoca diminassp. n. (♂♀). The new genus is closely related to other Neotropical Prodidominae by sharing the classic claw tuft clasper. Paleotoca gen. n. is diagnosed by the absence of a dorsal abdominal scutum, a ventral parallel rows of strong spines on the tibia and metatarsus I–II, a lack of a conductor, a discrete median apophysis on the bulb and a bifid retrolateral tibial apophysis in the male palp, a posterior extension that is beak-shaped, and folds of a copulatory duct ventrally visible in the female epigyne. Like other Prodidominae species from caves, P. diminassp. n. is a troglobitic spider with morphological characteristics that indicate specialization to live in subterranean environments, including reduction in cuticular pigments, eye loss, heavy spination and trichobothria. Full article

The taxonomic status of butterfly rays within the genus Gymnura remains a subject of ongoing debate among researchers. Some authors recognize up to five valid species for the Americas, while others considered several to be synonyms, which has posed a persistent challenge. We aimed to shed light on this complexity by employing molecular operational taxonomic units (MOTUs) based on the mitochondrial gene cytochrome oxidase I (COI). Genetic sequences were obtained from fresh muscle tissue collected in the marine ecoregions corresponding to the type locality from all the nominal butterfly ray species distributed along the Eastern Tropical Pacific (ETP). Our results unveiled compelling findings; all the species delimitation models used consistently identified seven MOTUs for the American continent and an extra G. altavela MOTU restricted to Africa. In addition, our results and models exceeded the worldwide accepted interspecific threshold of 2.0%. Remarkably, our results support the taxonomic reinstatement of Gymnura afuerae (Hildebrand, 1946) as a valid species, with a range expanding into the ETP in the Southern Hemisphere. Similarly, our data support the recent suggestion of resurrecting Gymnura valenciennii (Duméril, 1865) as a valid species in the western Atlantic. These findings urge a reassessment of the conservation status and a comprehensive taxonomic revision of American butterfly rays. Full article

We present descriptions of two newly discovered species of Myxobolus (Myxobolidae) that infect Mugil curema: Myxobolus mundauensis n. sp. found in gills and Myxobolus patriciae n. sp. found in intestines. These descriptions are based on the morphology of myxospores, histological analysis, and sequencing of the small subunit ribosomal DNA (ssrDNA). The myxospores of both species differ in the width and length of their spore bodies, and their ssrDNA sequences showed a 10.6% difference. These findings support the identification of these parasites as distinct and previously unknown species. Phylogenetic analysis revealed a subclade consisting of species that parasitize Mugiliformes, with Myxobolus mundauensis n. sp. being closely related to Myxobolus maceioensis, and Myxobolus patriciae n. sp. being closely related to Myxobolus curemae. Our analysis aligns with previous research suggesting a strong correlation between host orders and phylogenetic patterns within the Myxobolidae family. Full article

Precise identification of diatom species is fundamental to correctly interpreting their roles in the marine ecosystems; the documentation of species records with illustrations is therefore essential to guarantee ecological works and the continuous use of compositional data in future works. We document the diatom flora in the Kuroshio Extension (KE) area of the northwestern Pacific. Samples were collected by sediment trap deployment from November 2017 to August 2018 and identified using light microscopy and scanning electron microscopy. Eighty-two taxa belonging to 17 families and 38 genera were documented with representative references, morphological dimensions, brief diagnosis, distribution, and short taxonomic comments. All of the taxa were divided into three distribution patterns (cold, warm, and eurythermal taxa) based on the previous distribution records; each group may be transported by the Oyashio and Kuroshio Currents, respectively. The mixed occurrence of cold- and warm-water species indicates that the KE area is a crossroads for them. A preliminary checklist was compiled from previous studies, incorporating our records, and 206 diatom taxa occurred in the northeastern path of the Kuroshio Current. The diatom flora in the KE area will be used to understand the hydrology of the Kuroshio Current in future work. Full article