Analysis of the Genetic Diversity of the European Bison (Bison bonasus) Population in Lithuania
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection and DNA Isolation
2.2. Microsatellite Analysis
2.3. mtDNA Analysis
2.4. Data Analysis
3. Results
3.1. Microsatellite Genetic Diversity and Genetic Structure
3.2. Genetic Variation Based on mtDNA
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Marker | Forward Primer Sequence (5′-3′) | Reverse Primer Sequence (5′-3′) | Fluorescent Dye |
---|---|---|---|
BOVIRBP | 5′-GTATGATCACCTTCTATGCTTC-3′ | 5′-GCTTTAGGTAATCATCAGATAGC-3′ | 6FAM |
BTJAB1 | 5′-CATTAAGGGCTGGGATTCCT-3′ | 5′-AGATTTCTGGAGGAGGCTCACAGCA-3′ | 6FAM |
BM6438 | 5′-TTGAGCACAGACACAGACTGG-3′ | 5′-ACTGAATGCCTCCTTTGTGC-3′ | 6FAM |
BM2830 | 5′- ATGGGCGTATAAACACAGATG-3′ | 5′-TGAGTCCTGTCACCATCAGC-3′ | CY3 |
TGLA122 | 5′-CCCTCCTCCAGGTAAATCAGC-3′ | 5′-AATCACATGGCAAATAAGTACATAC-3′ | 6FAM |
ETH10 | 5′-GTTCAGGACTGGCCCTGCTAACA-3′ | 5′-CCTCCAGCCCACTTTCTCTTCTC-3′ | 6FAM |
BM1225 | 5′-TTTCTCAACAGAGGTGTCCAC-3′ | 5′-ACCCCTATCACCATGCTCTG-3′ | 6FAM |
BM1818 | 5′-AGCTGGGAATATAACCAAAGG-3′ | 5′-AAGTGCTTTCAAGGTCCATGC-3′ | CY3 |
TGLA53 | 5′-GCTTTCAGAAATAGTTTGCATTCA-3′ | 5′-ATCTTCACATGATATTACAGCAGA-3′ | CY3 |
BM723 | 5′-ACCCTTGGTTTTCTGCTGG-3′ | 5′-CATCCTGTGTGAGTGTTGTGG-3′ | 6FAM |
ETH121 | 5′-CCAACTCCTTACAGCAAATGTC-3′ | 5′-ATTTAGAGCTGGCTGGTAAGTG-3′ | 6FAM |
HEL9 | 5′-CCCATTCAGTCTTCAGAGGT-3′ | 5′-CACATCCATGTTCTCACCAC-3′ | 6FAM |
TGLA227 | 5′-CGAATTCCAAATCTGTTAATTTGCT-3′ | 5′-ACAGACAGAAACTCAATGAAAGCA′-3′ | CY3 |
Loci | Allele | Lithuania | Poland (Białowieża) | Poland (Bieszczady) | Sweden | Germany |
---|---|---|---|---|---|---|
BM6438 | 262 | 0.190 | 0 | 0 | 0 | 0 |
264 | 0.776 | 0.727 | 0.400 | 0.500 | 0.500 | |
274 | 0.034 | 0.273 | 0.600 | 0.500 | 0.500 | |
BM723 | 146 | 0.371 | 0 | 0 | 0 | 0 |
148 | 0.629 | 0.864 | 0.600 | 0.667 | 0.650 | |
152 | 0 | 0.136 | 0.400 | 0.333 | 0.350 | |
ETH121 | 186 | 0.050 | 0.091 | 0.100 | 0.500 | 0.350 |
192 | 0.633 | 0.909 | 0.900 | 0.417 | 0.650 | |
194 | 0 | 0 | 0 | 0.083 | 0 | |
204 | 0.100 | 0 | 0 | 0 | 0 | |
214 | 0.217 | 0 | 0 | 0 | 0 |
Population | N | Na | Ho | He | Fis | |
---|---|---|---|---|---|---|
Lithuania | 31 | Mean | 2.91 | 0.32 | 0.34 | −0.038 |
SE | 0.59 | 0.05 | 0.05 | 0.102 | ||
Poland, Białowieża | 11 | Mean | 2.21 | 0.23 | 0.24 | −0.148 |
SE | 0.29 | 0.06 | 0.04 | 0.111 | ||
Poland, Bieszczady | 5 | Mean | 2.10 | 0.25 | 0.27 | −0.122 |
SE | 0.26 | 0.05 | 0.03 | 0.077 | ||
Sweden | 6 | Mean | 2.23 | 0.27 | 0.25 | 0.026 |
SE | 0.20 | 0.05 | 0.03 | 0.100 | ||
Germany | 10 | Mean | 2.39 | 0.30 | 0.30 | −0.098 |
SE | 0.26 | 0.05 | 0.05 | 0.095 | ||
Total | 63 | Weighted mean | 2.58 | 0.29 | 0.30 | −0.076 |
SE | 0.14 | 0.02 | 0.02 | 0.043 |
Haplotype | GenBank Accession Numbers | Nucleotide Position | Country | ||||
---|---|---|---|---|---|---|---|
35 | 355 | 381 | 382 | 465 | |||
H1 | OQ442722 | − | − | C | − | C | Lithuania |
KP866326, KP866327, KP866328, KP866329 | Romania | ||||||
KY055664 EU272053 | Poland | ||||||
HQ437665 | Russia | ||||||
H2 | OQ442723 | − | − | − | − | ∙ | Lithuania |
EU272054 | Poland | ||||||
H3 | EU272055 | − | − | ∙ | C | ∙ | Poland |
H4 | U34294 | − | G | ∙ | − | T | Poland |
H5 | KP866323 | A | − | ∙ | − | ∙ | Romania |
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Lapickis, R.; Griciuvienė, L.; Kibiša, A.; Lipatova, I.; Aleksandravičienė, A.; Ražanskė, I.; Wojciechowska, M.; Kloch, M.; Olech, W.; Paulauskas, A. Analysis of the Genetic Diversity of the European Bison (Bison bonasus) Population in Lithuania. Diversity 2023, 15, 406. https://doi.org/10.3390/d15030406
Lapickis R, Griciuvienė L, Kibiša A, Lipatova I, Aleksandravičienė A, Ražanskė I, Wojciechowska M, Kloch M, Olech W, Paulauskas A. Analysis of the Genetic Diversity of the European Bison (Bison bonasus) Population in Lithuania. Diversity. 2023; 15(3):406. https://doi.org/10.3390/d15030406
Chicago/Turabian StyleLapickis, Romualdas, Loreta Griciuvienė, Artūras Kibiša, Indrė Lipatova, Asta Aleksandravičienė, Irma Ražanskė, Marlena Wojciechowska, Marta Kloch, Wanda Olech, and Algimantas Paulauskas. 2023. "Analysis of the Genetic Diversity of the European Bison (Bison bonasus) Population in Lithuania" Diversity 15, no. 3: 406. https://doi.org/10.3390/d15030406
APA StyleLapickis, R., Griciuvienė, L., Kibiša, A., Lipatova, I., Aleksandravičienė, A., Ražanskė, I., Wojciechowska, M., Kloch, M., Olech, W., & Paulauskas, A. (2023). Analysis of the Genetic Diversity of the European Bison (Bison bonasus) Population in Lithuania. Diversity, 15(3), 406. https://doi.org/10.3390/d15030406