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Gene Expression Changes and Variability in Response to Dietary Bioactives: Molecular Mechanisms Associated with Disease Prevention?

A special issue of Nutrients (ISSN 2072-6643). This special issue belongs to the section "Nutrigenetics and Nutrigenomics".

Deadline for manuscript submissions: closed (15 September 2021) | Viewed by 11871

Special Issue Editors


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Guest Editor
Quality, Safety and Bioactivity of Plant Foods, Food Science and Technology Department, CEBAS-CSIC, P.O. Box 360, Campus de Espinardo, Espinardo, 30100 MURCIA, Spain
Interests: bioactive compounds; cardiometabolic diseases; interindividual variability; mechanisms of action; nutritional genomics; Mediterranean diet
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Guest Editor
National Research Council (CNR) Institute of Clinical Physiology (IFC), 73100 Lecce, Italy
Interests: pathogenesis of chronic disese; nutri- and pharmacogenomics applied to obesity and cardiovascular disease prevention; analysis of the anti-aterogenic and anti-inflammatory properties of nutritional fatty acids and plant food bioactives in the field of vascular biology and physical exercise; analysis of dietary patterns and nutritional status in health and chronic disease
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Numerous nutrigenomic studies have pointed to the modulation of gene expression in cells and tissues as a potential molecular mechanism of action underlying the health benefits attributed to specific dietary components. A thorough revision of the literature in the area clearly shows considerable changes occurring at the level of specific or multiple mRNAs following in vivo and in vitro exposure to specific (micro)nutrients and dietary compounds.

However, and in addition to potential methodological and experimental design flaws, there are several important issues that need to be further addressed before we can fully clarify the molecular mechanisms to dietary components: 1) we need to further elucidate which gene expression changes are functionally associated with a particular cell/tissue and diseases that are susceptible of becoming biomarkers of response to diet; 2) we need to establish what can be considered a true molecular effect (change size) by exploring and best addressing intra- and inter-individual variability in gene (and protein) expression; 3) we need to improve our knowledge on how nutrigenomic effects interrelate with (epi)genetic signatures; 4) we have to translate this knowledge into human trials related to the effects of nutrients and dietary bioactive compounds on human health.

Overall, keeping into account that the genetic makeup of a particular individual co-ordinates his or her response to various dietary nutrients, we need to improve the design and objectives of nutrigenomic studies to improve our knowledge of the genes whose expression is susceptible to nutrient actions and further progress in disclosing the genes-nutrients interaction, and the mechanisms of action of dietary compounds with the final aim to both individualize strategies to preserve individual health and improve community nutrition. 

This Special Issue of Nutrients encourages the submission of original research or reviews, dealing principally with novel approaches (e.g. pre-clinical experimental designs and models such as organoids and bacteria), as well as of human clinical studies looking at the biological effects of (micro)nutrients and dietary bioactive compounds (or derived metabolites) with special effort towards the understanding of gene expression regulation by those compounds and their association with human health maintenance or disease prevention.

We hope that this Special Issue will collect a significant number of articles trying to answer some of the issues raised above, and that it will contribute to enhancing the evidence of the benefits of nutrients and dietary compounds for human health.

Dr. María-Teresa García Conesa
Dr. Marika Massaro
Guest Editors

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Keywords

  • Bioactive compounds of plant and animal origin 
  • Micronutrients and fatty acids 
  • Gene expression, mRNA, microRNAs 
  • Disease molecular biomarkers 
  • Molecular mechanisms of action 
  • Human health related intervention studies 
  • Intra- and interindividual variability 
  • Novel experimental models 
  • Organoids 
  • Bacterial cells

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Published Papers (2 papers)

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Research

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24 pages, 3023 KiB  
Article
Nutrigenomic Effect of Hydroxytyrosol in Vascular Endothelial Cells: A Transcriptomic Profile Analysis
by Maria Annunziata Carluccio, Rosanna Martinelli, Marika Massaro, Nadia Calabriso, Egeria Scoditti, Michele Maffia, Tiziano Verri, Valentina Gatta and Raffaele De Caterina
Nutrients 2021, 13(11), 3990; https://doi.org/10.3390/nu13113990 - 9 Nov 2021
Cited by 11 | Viewed by 3092
Abstract
Hydroxytyrosol (HT), a peculiar olive and olive oil phenolic antioxidant, plays a significant role in the endothelial and cardiovascular protection associated with olive oil consumption. However, studies examining the effects of HT on the whole-genome expression of endothelial cells, which are prominent targets [...] Read more.
Hydroxytyrosol (HT), a peculiar olive and olive oil phenolic antioxidant, plays a significant role in the endothelial and cardiovascular protection associated with olive oil consumption. However, studies examining the effects of HT on the whole-genome expression of endothelial cells, which are prominent targets for vasculo-protective effects of olive oil polyphenols, have been lacking. This study aims to comprehensively evaluate the genomic effects exerted by HT, at the transcriptional level, in endothelial cells under resting or proinflammatory conditions. Human umbilical vein endothelial cells (HUVECs) were treated with 10 µmol/L HT for 1 h and then stimulated with 5 ng/mL interleukin (IL)-1β for 3 h. Total RNA was extracted, and gene expression profile assessed with microarray analysis. Functional enrichment analysis and pathway analysis were performed by Ingenuity Pathways Analysis. Microarray data were validated by qRT-PCR. Fixing a significance threshold at 1.5-fold change, HT affected the expression of 708 and 599 genes, respectively, in HUVECs under resting and IL-1β-stimulated conditions; among these, 190 were common to both conditions. Unfolded protein response (UPR) and endoplasmic reticulum stress resulted from the two top canonical pathways common between HT and HT-IL-1β affected genes. IL-17F/A signaling was found in the top canonical pathways of HT modified genes under resting unstimulated conditions, whereas cardiac hypertrophy signaling was identified among the pathways affected by HT-IL-1β. The transcriptomic analysis allowed pinpointing immunological, inflammatory, proliferative, and metabolic-related pathways as the most affected by HT in endothelial cells. It also revealed previously unsuspected genes and related gene pathways affected by HT, thus broadening our knowledge of its biological properties. The unbiased identification of novel genes regulated by HT improves our understanding of mechanisms by which olive oil prevents or attenuates inflammatory diseases and identifies new genes to be enquired as potential contributors to the inter-individual variation in response to functional food consumption. Full article
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Review

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33 pages, 927 KiB  
Review
Influence of the Bioactive Diet Components on the Gene Expression Regulation
by Justyna Mierziak, Kamil Kostyn, Aleksandra Boba, Magdalena Czemplik, Anna Kulma and Wioleta Wojtasik
Nutrients 2021, 13(11), 3673; https://doi.org/10.3390/nu13113673 - 20 Oct 2021
Cited by 33 | Viewed by 7877
Abstract
Diet bioactive components, in the concept of nutrigenetics and nutrigenomics, consist of food constituents, which can transfer information from the external environment and influence gene expression in the cell and thus the function of the whole organism. It is crucial to regard food [...] Read more.
Diet bioactive components, in the concept of nutrigenetics and nutrigenomics, consist of food constituents, which can transfer information from the external environment and influence gene expression in the cell and thus the function of the whole organism. It is crucial to regard food not only as the source of energy and basic nutriments, crucial for living and organism development, but also as the factor influencing health/disease, biochemical mechanisms, and activation of biochemical pathways. Bioactive components of the diet regulate gene expression through changes in the chromatin structure (including DNA methylation and histone modification), non-coding RNA, activation of transcription factors by signalling cascades, or direct ligand binding to the nuclear receptors. Analysis of interactions between diet components and human genome structure and gene activity is a modern approach that will help to better understand these relations and will allow designing dietary guidances, which can help maintain good health. Full article
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