Genetic Causes of Human Infertility

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Human Genomics and Genetic Diseases".

Deadline for manuscript submissions: closed (15 January 2024) | Viewed by 28185

Special Issue Editor


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Guest Editor
Laboratory of Cell Biology, Department of Microscopy, School of Medicine and Biomedical Sciences (ICBAS), University of Porto (UP), Rua Jorge Viterbo Ferreira, 228, 4050-313 Porto, Portugal
Interests: glycoprotein; infertility; testicular stem cells; cryopreservation; human oocyte dysmorphism

Special Issue Information

Dear Colleagues,

The 2010 Nobel Prize laureate was granted to one of the greatest medical advances of the 20th century, the discovery of in vitro fertilization. With this discovery, other in vitro techniques were developed to circumvent infertility, a medical condition that afflicts a large proportion of humanity, including more than 10% of all couples worldwide. However, the use of these techniques bypasses the diagnosis of the underlying causes of infertility, especially those due to male factors. In addition, its use is not free of potential adverse effects, as it increases the probability of transmitting genetic diseases to offspring.

Male factor infertility by itself contributes to about 40–50% of all infertility cases and affects approximately 7% of the general population. The etiology of this multifactorial disorder of the reproductive system remains unknown in about 40% of patients, and a broad spectrum of genetic and nongenetic factors act mainly at three different levels—pretesticular (Kallmann syndrome), testicular and post-testicular—contribute to this disease.

Genetic causes involve a series of numerical or structural chromosomal abnormalities, such as aneuploidies, the most frequent being Klinfelter’s syndrome (XXY) followed by Y-chromosome disomy, 45X and translocations (Roberstonian); (micro) deletions, such as those involving the Y-chromosome (SRY and AZF); point mutations, such as those in the cystic fibrosis transmembrane conductance regulator (CFTR) gene; and encoding proteins involved in axoneme assembly and organization. Moreover, different gene mutations may have different inheritance patterns (autosomal recessive, autosomal dominant, X-linked or oligogenic inheritance). Nevertheless, over the past few decades, evidence has suggested associations between impaired spermatogenesis and genetic and epigenetic damage in sperm, with possible adverse consequences for offspring.

Genetic causes of male infertility remain underdiagnosed and untreated in many cases, with ~60% of men having idiopathic spermatogenic disruption. Thus, to overcome the scarcity of clear detection and treatment guidelines, specialists must share their studies and develop novel technologies that analyse the genetic factors impacting male factor infertility. Such progress will provide insights into the etiology of male factor infertility and permit the creation of targeted treatments for patients with specific infertile phenotype signatures.

Indeed, genetic screening of male factor infertility is relevant for its diagnostic value, clinical decision making and appropriate genetic counselling.

Moreover, the accurate transmission of gene, chromosomal and epigenetic information has considerable influence on fertility in males and on the fertility of their offspring.

The present Special Issue will focus on a comprehensive synopsis of the (epi)genetic basis of male factor infertility and on the techniques being used to produce new insights in infertility research, determining effective treatments for male patients.

Infertility has pervasive and profound implications for numerous traits of life, health, sustainable development and the economy. In this context, reproductive genetics includes not only prenatal screening, but also the identification of a carrier status. This role in the genetic diagnosis, counselling and treatment of infertile patients is only possible if advances are made towards the clarification of the genetic pathophysiology and the temporal evolution of infertility. This Special Issue focuses on the genetic causes of male infertility. We invite authors to submit manuscripts that study and provide an update on genetic factors associated with male infertility and abnormalities in the male reproductive system.

Dr. Rosália Sá
Guest Editor

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Keywords

  • infertility
  • male infertility
  • spermatozoa
  • epigenetics
  • genetic diagnosis
  • genetic tests
  • male infertility genes
  • male infertility phenotypes
  • teratozoospermia
  • azoospermia
  • cryptorchidism
  • morphological abnormalities of the sperm flagella

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Published Papers (8 papers)

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Research

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15 pages, 1065 KiB  
Article
Comparative Analysis of Shapley Values Enhances Transcriptomics Insights across Some Common Uterine Pathologies
by José A. Castro-Martínez, Eva Vargas, Leticia Díaz-Beltrán and Francisco J. Esteban
Genes 2024, 15(6), 723; https://doi.org/10.3390/genes15060723 - 1 Jun 2024
Viewed by 1266
Abstract
Uterine pathologies pose a challenge to women’s health on a global scale. Despite extensive research, the causes and origin of some of these common disorders are not well defined yet. This study presents a comprehensive analysis of transcriptome data from diverse datasets encompassing [...] Read more.
Uterine pathologies pose a challenge to women’s health on a global scale. Despite extensive research, the causes and origin of some of these common disorders are not well defined yet. This study presents a comprehensive analysis of transcriptome data from diverse datasets encompassing relevant uterine pathologies such as endometriosis, endometrial cancer and uterine leiomyomas. Leveraging the Comparative Analysis of Shapley values (CASh) technique, we demonstrate its efficacy in improving the outcomes of the classical differential expression analysis on transcriptomic data derived from microarray experiments. CASh integrates the microarray game algorithm with Bootstrap resampling, offering a robust statistical framework to mitigate the impact of potential outliers in the expression data. Our findings unveil novel insights into the molecular signatures underlying these gynecological disorders, highlighting CASh as a valuable tool for enhancing the precision of transcriptomics analyses in complex biological contexts. This research contributes to a deeper understanding of gene expression patterns and potential biomarkers associated with these pathologies, offering implications for future diagnostic and therapeutic strategies. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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12 pages, 608 KiB  
Article
Genome and Epigenome Disorders and Male Infertility: Feedback from 15 Years of Clinical and Research Experience
by Debbie Montjean, Marion Beaumont, Abdelhafid Natiq, Noureddine Louanjli, Andre Hazout, Pierre Miron, Thomas Liehr, Rosalie Cabry, Ilham Ratbi and Moncef Benkhalifa
Genes 2024, 15(3), 377; https://doi.org/10.3390/genes15030377 - 19 Mar 2024
Cited by 1 | Viewed by 2423
Abstract
Infertility affects around 20% of couples of reproductive age; however, in some societies, as many as one-third of couples are unable to conceive. Different factors contribute to the decline of male fertility, such us environmental and professional exposure to endocrine disruptors, oxidative stress, [...] Read more.
Infertility affects around 20% of couples of reproductive age; however, in some societies, as many as one-third of couples are unable to conceive. Different factors contribute to the decline of male fertility, such us environmental and professional exposure to endocrine disruptors, oxidative stress, and life habits with the risk of de novo epigenetics dysregulation. Since the fantastic development of new “omes and omics” technologies, the contribution of inherited or de novo genomes and epigenome disorders to male infertility have been further elucidated. Many other techniques have become available to andrology laboratories for the investigation of genome and epigenome integrity and the maturation and the competency of spermatozoa. All these new methods of assessment are highlighting the importance of genetics and epigenetics investigation for assisted reproduction pathology and for supporting professionals in counselling patients and proposing different management strategies for male infertility. This aims to improve clinical outcomes while minimizing the risk of genetics or health problems at birth. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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9 pages, 213 KiB  
Communication
Russian Regional Differences in Allele Frequencies of CFTR Gene Variants: Genetic Monitoring of Infertile Couples
by Andrey S. Glotov, Vyacheslav B. Chernykh, Olga A. Solovova, Aleksander V. Polyakov, Maksim Yu. Donnikov, Ludmila V. Kovalenko, Yury A. Barbitoff, Yulia A. Nasykhova, Tatyana E. Lazareva and Oleg S. Glotov
Genes 2024, 15(1), 45; https://doi.org/10.3390/genes15010045 - 27 Dec 2023
Viewed by 1183
Abstract
A male factor, commonly associated with poor semen quality, is revealed in about 50% of infertile couples. CFTR gene (Cystic Fibrosis Transmembrane Conduction Regulator) variants are one of the common genetic causes of azoospermia-related male infertility. Notably, the spectrum and frequency of pathogenic [...] Read more.
A male factor, commonly associated with poor semen quality, is revealed in about 50% of infertile couples. CFTR gene (Cystic Fibrosis Transmembrane Conduction Regulator) variants are one of the common genetic causes of azoospermia-related male infertility. Notably, the spectrum and frequency of pathogenic CFTR variants vary between populations and geographical regions. In this work, we made an attempt to evaluate the allele frequency (AF) of 12 common CFTR variants in infertile Russian men and healthy individuals from different districts of Russia. Because of the limited number of population-based studies on Russian individuals, we characterized the population AFs based on data from the Registry of Russian cystic fibrosis (CF) patients. In addition to the CF patient registry, we estimated the local frequencies of the same set of variants based on the results of genotyping of CF patients in local biocollections (from St. Petersburg and Yugra regions). AFs of common CFTR variants calculated based on registry and biocollection data showed good concordance with directly measured population AFs. The estimated region-specific frequencies of CFTR variants allowed us to uncover statistically significant regional differences in the frequencies of the F508del (c.1521_1523del; p.Phe508del) and CFTRdele2,3(21kb) (c.54-5940_273+10250del21kb; p.Ser18ArgfsX) variants. The data from population-based studies confirmed previous observations that F508del, CFTRdele2,3(21kb), and L138ins (c.413_415dup; p.Leu138dup)variants are the most abundant among infertile patients, and their frequencies are significantly lower in healthy individuals and should be taken into account during genetic monitoring of the reproductive health of Russian individuals. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)

Review

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26 pages, 678 KiB  
Review
The Klinefelter Syndrome and Testicular Sperm Retrieval Outcomes
by Rosália Sá, Luís Ferraz, Alberto Barros and Mário Sousa
Genes 2023, 14(3), 647; https://doi.org/10.3390/genes14030647 - 4 Mar 2023
Cited by 11 | Viewed by 8063
Abstract
Klinefelter syndrome (KS), caused by the presence of an extra X chromosome, is the most prevalent chromosomal sexual anomaly, with an estimated incidence of 1:500/1000 per male live birth (karyotype 47,XXY). High stature, tiny testicles, small penis, gynecomastia, feminine body proportions and hair, [...] Read more.
Klinefelter syndrome (KS), caused by the presence of an extra X chromosome, is the most prevalent chromosomal sexual anomaly, with an estimated incidence of 1:500/1000 per male live birth (karyotype 47,XXY). High stature, tiny testicles, small penis, gynecomastia, feminine body proportions and hair, visceral obesity, and testicular failure are all symptoms of KS. Endocrine (osteoporosis, obesity, diabetes), musculoskeletal, cardiovascular, autoimmune disorders, cancer, neurocognitive disabilities, and infertility are also outcomes of KS. Causal theories are discussed in addition to hormonal characteristics and testicular histology. The retrieval of spermatozoa from the testicles for subsequent use in assisted reproduction treatments is discussed in the final sections. Despite testicular atrophy, reproductive treatments allow excellent results, with rates of 40–60% of spermatozoa recovery, 60% of clinical pregnancy, and 50% of newborns. This is followed by a review on the predictive factors for successful sperm retrieval. The risks of passing on the genetic defect to children are also discussed. Although the risk is low (0.63%) when compared to the general population (0.5–1%), patients should be informed about embryo selection through pre-implantation genetic testing (avoids clinical termination of pregnancy). Finally, readers are directed to a number of reviews where they can enhance their understanding of comprehensive diagnosis, clinical care, and fertility preservation. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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25 pages, 2038 KiB  
Review
Morphological and Molecular Bases of Male Infertility: A Closer Look at Sperm Flagellum
by Rute Pereira and Mário Sousa
Genes 2023, 14(2), 383; https://doi.org/10.3390/genes14020383 - 1 Feb 2023
Cited by 12 | Viewed by 8073
Abstract
Infertility is a major health problem worldwide without an effective therapy or cure. It is estimated to affect 8–12% of couples in the reproductive age group, equally affecting both genders. There is no single cause of infertility, and its knowledge is still far [...] Read more.
Infertility is a major health problem worldwide without an effective therapy or cure. It is estimated to affect 8–12% of couples in the reproductive age group, equally affecting both genders. There is no single cause of infertility, and its knowledge is still far from complete, with about 30% of infertile couples having no cause identified (named idiopathic infertility). Among male causes of infertility, asthenozoospermia (i.e., reduced sperm motility) is one of the most observed, being estimated that more than 20% of infertile men have this condition. In recent years, many researchers have focused on possible factors leading to asthenozoospermia, revealing the existence of many cellular and molecular players. So far, more than 4000 genes are thought to be involved in sperm production and as regulators of different aspects of sperm development, maturation, and function, and all can potentially cause male infertility if mutated. In this review, we aim to give a brief overview of the typical sperm flagellum morphology and compile some of the most relevant information regarding the genetic factors involved in male infertility, with a focus on sperm immotility and on genes related to sperm flagellum development, structure, or function. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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Other

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11 pages, 2180 KiB  
Brief Report
Different Nuclear Architecture in Human Sperm According to Their Morphology
by Nino-Guy Cassuto, Nesrine Ogal, Said Assou, Lea Ruoso, Eli-Jonathan Rogers, Miguel-José Monteiro, Daniel Thomas, Jean-Pierre Siffroi and Alexandre Rouen
Genes 2024, 15(4), 464; https://doi.org/10.3390/genes15040464 - 7 Apr 2024
Viewed by 1198
Abstract
Human sperm parameters serve as a first step in diagnosing male infertility, but not in determining the potential for successful pregnancy during assisted reproductive technologies (ARTs) procedures. Here, we investigated the relationship between sperm head morphology at high magnification, based on strict morphologic [...] Read more.
Human sperm parameters serve as a first step in diagnosing male infertility, but not in determining the potential for successful pregnancy during assisted reproductive technologies (ARTs) procedures. Here, we investigated the relationship between sperm head morphology at high magnification, based on strict morphologic criteria, and the nuclear architecture analyzed by fluorescence in situ hybridization (FISH). We included five men. Two of them had an elevated high-magnification morphology score of 6 points (Score 6) indicating high fertility potential, whereas three had a low score of 0 points (Score 0), indicating low fertility potential. We used FISH to study the inter-telomeric distance and the chromosomal territory area of chromosome 1 (Chr. 1). We then compared these two parameters between subjects with high and low scores. FISH data analysis showed that the inter-telomeric distance (ITD) and chromosomal territory area (CTA) of Chr. 1 were significantly higher in subjects with low scores (score 0) than high scores (score 6). Our results suggest that (i) there is a link between nuclear architecture and sperm head abnormalities, particularly vacuoles; and (ii) it is possible to select spermatozoa with normal nuclear architecture, which might indirectly explain the positive ART outcomes observed with this technique. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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14 pages, 1222 KiB  
Brief Report
Primary Ciliary Dyskinesia in a Portuguese Bronchiectasis Outpatient Clinic
by Eduarda Milheiro Tinoco, Ana Rita Gigante, Edite Ferreira, Inês Sanches, Rute Pereira, Rosália Sá, Regina Monteiro, Mário Sousa and Ivone Pascoal
Genes 2023, 14(3), 541; https://doi.org/10.3390/genes14030541 - 21 Feb 2023
Cited by 2 | Viewed by 2009
Abstract
Primary ciliary dyskinesia (PCD) is a rare hereditary condition characterized by decreased mucociliary clearance of the airways and a compromised reproductive system, resulting in male and female infertility. Several mutations with varied clinical and pathological features have been documented, making diagnosis a challenging [...] Read more.
Primary ciliary dyskinesia (PCD) is a rare hereditary condition characterized by decreased mucociliary clearance of the airways and a compromised reproductive system, resulting in male and female infertility. Several mutations with varied clinical and pathological features have been documented, making diagnosis a challenging process. The purpose of this study is to describe the clinical and pathological features of Portuguese patients with PCD and to examine their genetic variants. A retrospective observational analysis was conducted with patients who were being monitored at a bronchiectasis outpatient clinic in 2022 and had a confirmed or high-likelihood diagnosis of PCD. In total, 17 patients were included in the study, with 12 (66.7%) having PCD confirmed and 5 (29.4%) having a high-likelihood diagnosis. Furthermore, 12 patients were subjected to transmission electron microscopy (TEM), with 7 (58.3%) exhibiting one hallmark defect. Genetic test data was obtained for all 17 patients, with 7 of them (41.2%) displaying a pathogenic/likely pathogenic mutation in homozygosity. To summarize, PCD is an uncommon but significant hereditary illness with consequences regarding morbidity and mortality. Despite the lack of a specific treatment, it is critical to confirm the diagnosis with genetic testing in order to effectively manage the disease and its accompanying disorders. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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13 pages, 956 KiB  
Systematic Review
Telomere Length, a New Biomarker of Male (in)Fertility? A Systematic Review of the Literature
by Anne-Julie Fattet, Maxime Chaillot and Isabelle Koscinski
Genes 2023, 14(2), 425; https://doi.org/10.3390/genes14020425 - 7 Feb 2023
Cited by 10 | Viewed by 3100
Abstract
Male factors are suspected in around half cases of infertility, of which up to 40% are diagnosed as idiopathic. In the context of a continuously increased resort to ART and increased decline of semen parameters, it is of greatest interest to evaluate an [...] Read more.
Male factors are suspected in around half cases of infertility, of which up to 40% are diagnosed as idiopathic. In the context of a continuously increased resort to ART and increased decline of semen parameters, it is of greatest interest to evaluate an additional potential biomarker of sperm quality. According to PRISMA guidelines, this systematic review of the literature selected studies evaluating telomere length in sperm and/or in leukocytes as a potential male fertility biomarker. Twenty-two publications (3168 participants) were included in this review of experimental evidence. For each study, authors determined if there was a correlation between telomere length and semen parameters or fertility outcomes. Of the 13 studies concerning sperm telomere length (STL) and semen parameters, ten found an association between short STL and altered parameters. Concerning the impact of STL on ART results, the data are conflicting. However, eight of the 13 included studies about fertility found significantly longer sperm telomeres in fertile men than in infertile men. In leukocytes, the seven studies reported conflicting findings. Shorter sperm telomeres appear to be associated with altered semen parameters or male infertility. Telomere length may be considered as a new molecular marker of spermatogenesis and sperm quality, and thus is related to male fertility potential. However, additional studies are needed to define the place of the STL in the assessment of individual fertility. Full article
(This article belongs to the Special Issue Genetic Causes of Human Infertility)
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