Self-Replicating RNA Viruses

A special issue of Viruses (ISSN 1999-4915). This special issue belongs to the section "General Virology".

Deadline for manuscript submissions: closed (30 September 2024) | Viewed by 4894

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PanTherapeutics, Rue des Remparts 4, CH-1095 Lutry, Switzerland
Interests: viral gene therapy; viral vaccines; gene expression using viral vectors; structural biology; epigenetics; nutrigenomics
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Dear Colleagues,

Self-replicating RNA viruses possess a special feature of massive self-amplification of viral RNA in a broad range of mammalian and non-mammalian host cells, providing a high-level expression of heterologous genes. However, the expression is transient due to the non-integrating, rapidly degrading viral RNA genome. For this reason, self-replicating RNA viruses have been ideal for the prevention and therapy of infectious diseases and various cancers. In contrast, self-replicating RNA viruses are not suitable for the treatment of chronic diseases requiring long-term transgene expression. Among self-replicating RNA viruses, alphaviruses and flaviviruses possessing a single-stranded RNA genome of positive polarity have been frequently used. Likewise, the negative-stranded measles viruses and rhabdoviruses have also been utilized. Self-replicating RNA viruses have elicited robust target-specific immune responses and provided protection against challenges with infectious agents in preclinical animal studies. Moreover, immunization studies have demonstrated tumor-associated antigen-specific immune responses and protection against tumor challenges in animal tumor models. In a limited number of clinical trials, good safety and tolerability have been demonstrated in cancer patients although therapeutic efficacy needs to be improved through vector and dose optimization. Self-replicating RNA viruses possess wide flexibility as delivery vectors can be utilized as recombinant viral particles, RNA replicons or DNA replicons. Due to the RNA self-amplification, RNA replicons are superior to synthetic mRNA, meaning that similar immune response and protection can be achieved by using 100–1000-fold-lower RNA doses. Similarly, DNA replicons doses can be significantly reduced compared to conventional plasmid DNA. In the case of cancer therapy, oncolytic RNA viruses have demonstrated tumor-cell-specific replication leading to efficient tumor cell killing without causing harm to normal tissue. In summary, there is a huge potential of using self-replicating RNA viruses for the prevention and treatment of infectious diseases and various cancers.

Dr. Kenneth Lundstrom
Guest Editor

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Published Papers (2 papers)

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Review

14 pages, 501 KiB  
Review
Self-Replicating Alphaviruses: From Pathogens to Therapeutic Agents
by Kenneth Lundstrom
Viruses 2024, 16(11), 1762; https://doi.org/10.3390/v16111762 - 12 Nov 2024
Viewed by 619
Abstract
Alphaviruses are known for being model viruses for studying cellular functions related to viral infections but also for causing epidemics in different parts of the world. More recently, alphavirus-based expression systems have demonstrated efficacy as vaccines against infectious diseases and as therapeutic applications [...] Read more.
Alphaviruses are known for being model viruses for studying cellular functions related to viral infections but also for causing epidemics in different parts of the world. More recently, alphavirus-based expression systems have demonstrated efficacy as vaccines against infectious diseases and as therapeutic applications for different cancers. Point mutations in the non-structural alphaviral replicase genes have generated enhanced transgene expression and created temperature-sensitive expression vectors. The recently engineered trans-amplifying RNA system can provide higher translational efficiency and eliminate interference with cellular translation. The self-replicating feature of alphaviruses has provided the advantage of extremely high transgene expression of vaccine-related antigens and therapeutic anti-tumor and immunostimulatory genes, which has also permitted significantly reduced doses for prophylactic and therapeutic applications, potentially reducing adverse events. Furthermore, alphaviruses have shown favorable flexibility as they can be delivered as recombinant viral particles, RNA replicons, or DNA-replicon-based plasmids. In the context of infectious diseases, robust immune responses against the surface proteins of target agents have been observed along with protection against challenges with lethal doses of infectious agents in rodents and primates. Similarly, the expression of anti-tumor genes and immunostimulatory genes from alphavirus vectors has provided tumor growth inhibition, tumor regression, and cures in animal cancer models. Moreover, protection against tumor challenges has been observed. In clinical settings, patient benefits have been reported. Alphaviruses have also been considered for the treatment of neurological disorders due to their neurotrophic preference. Full article
(This article belongs to the Special Issue Self-Replicating RNA Viruses)
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17 pages, 1407 KiB  
Review
Trans-Amplifying RNA: A Journey from Alphavirus Research to Future Vaccines
by Ayşegül Yıldız, Cristian Răileanu and Tim Beissert
Viruses 2024, 16(4), 503; https://doi.org/10.3390/v16040503 - 25 Mar 2024
Cited by 3 | Viewed by 3733
Abstract
Replicating RNA, including self-amplifying RNA (saRNA) and trans-amplifying RNA (taRNA), holds great potential for advancing the next generation of RNA-based vaccines. Unlike in vitro transcribed mRNA found in most current RNA vaccines, saRNA or taRNA can be massively replicated within cells in the [...] Read more.
Replicating RNA, including self-amplifying RNA (saRNA) and trans-amplifying RNA (taRNA), holds great potential for advancing the next generation of RNA-based vaccines. Unlike in vitro transcribed mRNA found in most current RNA vaccines, saRNA or taRNA can be massively replicated within cells in the presence of RNA-amplifying enzymes known as replicases. We recently demonstrated that this property could enhance immune responses with minimal injected RNA amounts. In saRNA-based vaccines, replicase and antigens are encoded on the same mRNA molecule, resulting in very long RNA sequences, which poses significant challenges in production, delivery, and stability. In taRNA-based vaccines, these challenges can be overcome by splitting the replication system into two parts: one that encodes replicase and the other that encodes a short antigen-encoding RNA called transreplicon. Here, we review the identification and use of transreplicon RNA in alphavirus research, with a focus on the development of novel taRNA technology as a state-of-the art vaccine platform. Additionally, we discuss remaining challenges essential to the clinical application and highlight the potential benefits related to the unique properties of this future vaccine platform. Full article
(This article belongs to the Special Issue Self-Replicating RNA Viruses)
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