Challenges and Prospects for the Mediterranean and Subtropical Plant Pathology

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Protection and Biotic Interactions".

Deadline for manuscript submissions: closed (29 February 2024) | Viewed by 18752

Special Issue Editors


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Guest Editor
Phytopathology Department, Agricultural University of Athens, 11855 Athens, Greece
Interests: biological control; epigenetics; microbial volatile organic conmpounds; plant–microbe interactions; soil-borne diseases; induced systemic resistance
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Guest Editor
Department of Agricultural Sciences, Biotechnology and Food Science, Limassol 3036, Cyprus
Interests: basic and applied aspects of plant-microbe interactions; biological control of plant diseases; plant growth-promoting rhizobacteria; rhizosphere microbiome in suppressive soils
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol 3036, Cyprus
Interests: plant-microbe interactions; plant-fungal wilt pathogens interactions; plant and pathogen hormone signaling; fungal virulence genes; plant defense mechanisms; plant growth-promoting rhizobacteria; rhizosphere microbiome in suppressive soils

Special Issue Information

Dear Colleagues,

The subtropical region stretching between the tropical zone and the temperate zone, including the Mediterranean region, is characterized by rich biodiversity and native species that are not found elsewhere and are vital to ecosystems function. Subtropical agriculture is facing numerous major threats including invasive species, pests, and desertification due to global warming. At the same time, subtropical agriculture relies on the extensive use of chemicals to secure food production however the long-term application of agrochemicals negatively affected terrestrial ecosystems and human health. Moreover, climate change has a consequence on the occurrence, prevalence and severity of plant diseases increasing the risk of disease spreading and outbreaks amongst crops. Knowledge on the biology and epidemiology of autochthonous and invasive pests, naturally occurring plant resistance, symbiotic microbiome and chemical compounds is needed to develop strategies to combat diseases and abiotic stresses.

This Special Issue of Plants will highlight all aspects of phytopathology, especially relating to Subtropical plants with emphasis on Mediterranean crops. The key topics are: integrated disease management; invasive and emerging pathogens; new tools in diagnostics and management; plant–microbe interactions; impact of climate change in plant health; natural compounds and plant stimulants; disease epidemiology and modelling.

Dr. Sotiris Tjamos
Dr. Iakovos Pantelides
Dr. Maria-Dimitra Tsolakidou
Guest Editors

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Keywords

  • integrated disease management
  • invasive and emerging pathogens
  • new tools in diagnostics and management
  • plant–microbe interactions
  • impact of climate change in plant health
  • natural compounds and plant stimulants
  • disease epidemiology and modelling

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Published Papers (8 papers)

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Research

14 pages, 2034 KiB  
Article
Effects of Leaf Wetness Duration, Temperature, and Host Phenological Stage on Infection of Walnut by Xanthomonas arboricola pv. juglandis
by Concepció Moragrega and Isidre Llorente
Plants 2023, 12(15), 2800; https://doi.org/10.3390/plants12152800 - 28 Jul 2023
Cited by 3 | Viewed by 1609
Abstract
Bacterial blight, caused by Xanthomonas arboricola pv. juglandis, is a significant disease affecting walnut production worldwide. Outbreaks are most severe in spring, and closely tied to host phenology and weather conditions. Pathogen infections are mainly observed in catkins, female flowers, leaves, and [...] Read more.
Bacterial blight, caused by Xanthomonas arboricola pv. juglandis, is a significant disease affecting walnut production worldwide. Outbreaks are most severe in spring, and closely tied to host phenology and weather conditions. Pathogen infections are mainly observed in catkins, female flowers, leaves, and fruits. In this study, the effect of wetness duration and temperature on walnut infections by X. arboricola pv. juglandis was determined through two independent experiments conducted under controlled environmental conditions. The combined effect of both climatic parameters on disease severity was quantified using a third-order polynomial equation. The model obtained by linear regression and backward elimination technique fitted well to the data (R2 = 0.94 and R2adj = 0.93). The predictive capacity of the forecasting model was evaluated on pathogen-inoculated walnut plants exposed to different wetness duration–temperature combinations under Mediterranean field conditions. Observed disease severity in all events aligned with predicted infection risk. Additionally, the relationship between leaf and fruit age and the disease severity was quantified and modelled. A prediction model, which has been referred to as the WalBlight-risk model, is proposed for evaluation as an advisory system for timing bactericide sprays to manage bacterial blight in Mediterranean walnut orchards. Full article
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16 pages, 3489 KiB  
Article
Hybrid Vitis Cultivars with American or Asian Ancestries Show Higher Tolerance towards Grapevine Trunk Diseases
by András Csótó, Antal Nagy, Nóra Laurinyecz, Zóra Annamária Nagy, Csaba Németh, Erzsébet Krisztina Németh, Anna Csikász-Krizsics, Nándor Rakonczás, Florence Fontaine, Erzsébet Fekete, Michel Flipphi, Levente Karaffa and Erzsébet Sándor
Plants 2023, 12(12), 2328; https://doi.org/10.3390/plants12122328 - 15 Jun 2023
Cited by 3 | Viewed by 2385
Abstract
Grape production worldwide is increasingly threatened by grapevine trunk diseases (GTDs). No grapevine cultivar is known to be entirely resistant to GTDs, but susceptibility varies greatly. To quantify these differences, four Hungarian grape germplasm collections containing 305 different cultivars were surveyed to determine [...] Read more.
Grape production worldwide is increasingly threatened by grapevine trunk diseases (GTDs). No grapevine cultivar is known to be entirely resistant to GTDs, but susceptibility varies greatly. To quantify these differences, four Hungarian grape germplasm collections containing 305 different cultivars were surveyed to determine the ratios of GTDs based on symptom expression and the proportion of plant loss within all GTD symptoms. The cultivars of monophyletic Vitis vinifera L. origin were amongst the most sensitive ones, and their sensitivity was significantly (p < 0.01) higher than that of the interspecific (hybrid) cultivars assessed, which are defined by the presence of Vitis species other than V. vinifera (e.g., V. labrusca L., V. rupestris Scheele, and V. amurensis Rupr.) in their pedigree. We conclude that the ancestral diversity of grapes confers a higher degree of resilience against GTDs. Full article
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13 pages, 1278 KiB  
Article
Wheat Stem Rust Detection and Race Characterization in Tunisia
by Wided Abdedayem, Mehran Patpour, Marwa Laribi, Annemarie F. Justesen, Hajer Kouki, Moez Fakhfakh, Mogens S. Hovmøller, Amor H. Yahyaoui, Sonia Hamza and Sarrah Ben M’Barek
Plants 2023, 12(3), 552; https://doi.org/10.3390/plants12030552 - 25 Jan 2023
Cited by 2 | Viewed by 2455
Abstract
Climate changes over the past 25 years have led to conducive conditions for invasive and transboundary fungal disease occurrence, including the re-emergence of wheat stem rust disease, caused by Puccinia graminis f.sp. tritici (Pgt) in East Africa, Europe, and the Mediterranean basin. Since [...] Read more.
Climate changes over the past 25 years have led to conducive conditions for invasive and transboundary fungal disease occurrence, including the re-emergence of wheat stem rust disease, caused by Puccinia graminis f.sp. tritici (Pgt) in East Africa, Europe, and the Mediterranean basin. Since 2018, sporadic infections have been observed in Tunisia. In this study, we investigated Pgt occurrence at major Tunisian wheat growing areas. Pgt monitoring, assessment, and sampling from planted trap nurseries at five different locations over two years (2021 and 2022) revealed the predominance of three races, namely TTRTF (Clade III-B), TKKTF (Clade IV-F), and TKTTF (Clade IV-B). Clade III-B was the most prevalent in 2021 as it was detected at all locations, while in 2022 Pgt was only reported at Beja and Jendouba, with the prevalence of Clade IV-B. The low levels of disease incidence during these two years and Pgt population diversity suggest that this fungus most likely originated from exotic incursions and that climate factors could have caused disease establishment in Tunisia. Further evaluation under the artificial disease pressure of Tunisian wheat varieties and weather-based modeling for early disease detection in the Mediterranean area could be helpful in monitoring and predicting wheat stem rust emergence and epidemics. Full article
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19 pages, 5156 KiB  
Article
ITS Metabarcoding Reveals the Effects of Oregano Essential Oil on Fusarium oxysporum and Other Fungal Species in Soil Samples
by Lefkothea Karapetsi, Emmanouil Pratsinakis, Fotis Xirakias, Maslin Osathanunkul, Ioannis Vagelas and Panagiotis Madesis
Plants 2023, 12(1), 62; https://doi.org/10.3390/plants12010062 - 22 Dec 2022
Cited by 2 | Viewed by 2353
Abstract
The destructive effects of Fusarium wilts are known to affect the production of many crops. The control of Fusarium oxysporum and other soilborne pathogens was mainly based on soil fumigation (methyl bromide), which has long been prohibited and, nowadays, is based on a [...] Read more.
The destructive effects of Fusarium wilts are known to affect the production of many crops. The control of Fusarium oxysporum and other soilborne pathogens was mainly based on soil fumigation (methyl bromide), which has long been prohibited and, nowadays, is based on a limited number of available fungicides due to legislation restrictions on residue tolerances and environmental impacts. Alternatively, natural and environmentally safe compounds, such as essential oils, are being investigated for their efficacy in the control of soilborne diseases. The great fungicidal ability of the oregano essential oil components (carvacrol and thymol) has been reported to inhibit the germination and the mycelial development of several fungal species, including F. oxysporum. The aim of our study was to demonstrate how the metabarcoding approach can provide valuable information about the positive or negative impacts of two different doses of oregano essential oil on Fusarium oxysporum and other fungal species which were present in the studied soil samples through the amplification of the ITS1 and ITS2 regions, which were analyzed on a MiSeq platform. A higher dose of oregano essential oil decreased the abundance of F. oxysporum, along with other fungal species, but also had negative effects on Trichoderma evansii and Mortierella chlamydospora, species with possible fungicidal properties. Soil properties, essential oil properties, the fungal composition, and interactions between fungal species should be considered as factors influencing the effectiveness of essential oils as biological control agents for soilborne pathogens. Full article
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13 pages, 960 KiB  
Article
High Input of Nitrogen Fertilization and Short Irrigation Frequencies Forcefully Promote the Development of Verticillium Wilt of Olive
by Mario Pérez-Rodríguez, Antonio Santos-Rufo and Francisco Javier López-Escudero
Plants 2022, 11(24), 3551; https://doi.org/10.3390/plants11243551 - 16 Dec 2022
Cited by 2 | Viewed by 1690
Abstract
It is known that high N doses, N/K imbalances, and frequent irrigation favor Verticillium wilt. The influence of fertilization and its interaction with the frequency of irrigation on the development of Verticillium wilt of olive (VWO) has been evaluated. A split-split-plot design in [...] Read more.
It is known that high N doses, N/K imbalances, and frequent irrigation favor Verticillium wilt. The influence of fertilization and its interaction with the frequency of irrigation on the development of Verticillium wilt of olive (VWO) has been evaluated. A split-split-plot design in microplots with two naturally infested soils of different texture was established for studying three fertilization treatments (NO3Ca, NPK and without fertilization), plus two irrigation frequencies (daily and deficit). The treatments were applied by means of fertigation, evaluating the susceptible cultivar Picual. Final disease incidence in plants subjected to NO3Ca daily treatment was 100% regardless of soil texture. However, final mortality in these plants was 37% and 85.2% in clay and sandy loam soils, respectively. In addition, the area under the disease progress curve values were significantly higher (49.1%) in plants subjected to NO3Ca fertilization compared to those not fertilized or fertilized with N-P-K when plants were grown in clay soil. This value in the sandy loam soil was significantly higher in the NO3Ca daily irrigation treatment (94.3%), followed by the N-P-K-daily treatment (61.1%) which also was significantly higher than the unfertilized daily, N-deficit and NPK-deficit treatments (37.8, 42.6 and 44.9%, respectively). The plants submitted to unfertilized-deficit treatment reached the lowest value (9.6%). In this work it can be concluded that the application of fertilizer or the application of fertilizer with daily irrigation in naturally infested soils increases the development of VWO in Picual. Full article
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24 pages, 3592 KiB  
Article
Combined Transcriptomic and Metabolomic Analysis Reveals Insights into Resistance of Arabidopsis bam3 Mutant against the Phytopathogenic Fungus Fusarium oxysporum
by Eleni Kalogeropoulou, Konstantinos A. Aliferis, Sotirios E. Tjamos, Irene Vloutoglou and Epaminondas J. Paplomatas
Plants 2022, 11(24), 3457; https://doi.org/10.3390/plants11243457 - 9 Dec 2022
Cited by 4 | Viewed by 2147
Abstract
The wilt-inducing strains of Fusarium oxysporum are responsible for severe damage to many economically important plant species. The most cost-effective and environmentally safe method for the management of Fusarium wilt is the use of resistant cultivars when they are available. In the present [...] Read more.
The wilt-inducing strains of Fusarium oxysporum are responsible for severe damage to many economically important plant species. The most cost-effective and environmentally safe method for the management of Fusarium wilt is the use of resistant cultivars when they are available. In the present study, the Arabidopsis genotype with disruptions in the β-amylase 3 (BAM3) gene, which encodes the major hydrolytic enzyme that degrades starch to maltose, had significantly lower susceptibility to Fusarium oxysporum f. sp. raphani (For) compared to wild-type (wt) plants. It showed the lowest disease severity and contained reduced quantities of fungal DNA in the plant vascular tissues when analyzed with real-time PCR. Through metabolomic analysis using gas chromatography (GC)–mass spectrometry (MS) and gene-expression analysis by reverse-transcription quantitative PCR (RT-qPCR), we observed that defense responses of Arabidopsis bam3 mutants are associated with starch-degradation enzymes, the corresponding modification of the carbohydrate balance, and alterations in sugar (glucose, sucrose, trehalose, and myo-inositol) and auxin metabolism. Full article
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23 pages, 3872 KiB  
Article
A Novel Seimatosporium and Other Sporocadaceae Species Associated with Grapevine Trunk Diseases in Cyprus
by Loukas I. Kanetis, Demetris Taliadoros, Georgios Makris and Michalis Christoforou
Plants 2022, 11(20), 2733; https://doi.org/10.3390/plants11202733 - 16 Oct 2022
Cited by 2 | Viewed by 2684
Abstract
Besides well-known grapevine trunk disease (GTD)-related pathogens, there is an increased interest in wood-colonizing fungi that infect grapevines. During 2017–2018, a survey was conducted in Cyprus and wood samples were collected from vines exhibiting typical GTD symptoms. Based on morphological and multilocus phylogenetic [...] Read more.
Besides well-known grapevine trunk disease (GTD)-related pathogens, there is an increased interest in wood-colonizing fungi that infect grapevines. During 2017–2018, a survey was conducted in Cyprus and wood samples were collected from vines exhibiting typical GTD symptoms. Based on morphological and multilocus phylogenetic analyses (ITS, LSU, bt2, tef1-a), four species in the Sporocadaceae family were described and typified; two in the genus of Seimatosporium: Seim. cyprium sp. nov. and Seim. vitis-viniferae and two in Sporocadus: Spo. kurdistanicus and Spo. rosigena. The teleomorph of Seim. cyprium sp. nov. was also described. Pathogenicity trials with representative isolates of each species were performed on woody stems of two-year-old potted grapevines for 12 months under field conditions. All isolates were pathogenic, causing dark brown to black vascular discoloration, extending upward and downward from the inoculation point. Sporocadus isolates were significantly more aggressive than Seimatosporium with lesion lengths ranging from 9.24 to 6.90 and 4.13 to 4.00 cm, respectively. Successful re-isolations were also evident for all species and isolates. Seim. cyprium sp. nov. is a newly described species, while Spo. kurdistanicus and Spo. rosigena are reported for the first time in Europe on Vitis vinifera, suggesting the potential role of Sporocadaceae in the GTDs complex. Full article
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20 pages, 4206 KiB  
Article
Physiological and Structural Responses of Olive Leaves Related to Tolerance/Susceptibility to Verticillium dahliae
by Martina Cardoni, José Luis Quero, Rafael Villar and Jesús Mercado-Blanco
Plants 2022, 11(17), 2302; https://doi.org/10.3390/plants11172302 - 2 Sep 2022
Cited by 2 | Viewed by 1978
Abstract
Verticillium wilt of olive (VWO), caused by the soil borne fungus Verticillium dahliae, is one of the most relevant diseases affecting this crop worldwide. One of the best VWO management strategies is the use of tolerant cultivars. Scarce information is available about [...] Read more.
Verticillium wilt of olive (VWO), caused by the soil borne fungus Verticillium dahliae, is one of the most relevant diseases affecting this crop worldwide. One of the best VWO management strategies is the use of tolerant cultivars. Scarce information is available about physiological and structural responses in the leaves of olive cultivars displaying different levels of tolerance to VWO. To identify links between this phenotype and variations in functional characteristics of the leaves, this study examined the structural and physiological traits and the correlations among them in different olive varieties. This evaluation was conducted in the presence/absence of V. dahliae. On the one hand, no leaf trait but the area was related to VWO tolerance in the absence of the pathogen. On the other hand, after inoculation, susceptible cultivars showed lower leaf area and higher leaf mass per area and dry matter content. Furthermore, at the physiological level, these plants showed severe symptoms resembling water stress. Analyzing the relationships among physiological and structural traits revealed differences between tolerant and susceptible cultivars both in the absence and in the presence of V. dahliae. These results showed that olive leaves of VWO-tolerant and VWO-susceptible cultivars adopt different strategies to cope with the pathogen. Full article
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