Spectrosc. J., Volume 2, Issue 3 (September 2024) – 7 articles

Here, we present a general framework for computing the infrared anharmonic vibrational spectra of polyatomic molecules using Born–Oppenheimer molecular dynamics (BOMD) with PyRAMD software. To account for nuclear quantum effects, we suggest using a simplified Wigner sampling (SWS) approach simultaneously coupled with Andersen and Berendsen thermostats. We propose a new criterion for selecting the parameter of the SWS based on the molecules’ harmonic vibrational frequencies and usage of the large-time-step blue shift correction, allowing for a decrease in computational expenses. For the Fourier transform of the dipole moment autocorrelation function, we propose using the regularized least-squares analysis, which allows us to obtain higher-frequency resolution than with the direct application of fast Fourier transform. Finally, we suggest the usage of the pre-parameterized scaling factors for the IR spectra from BOMD, also providing the scaling factors for the spectra at the BLYP-D3(BJ)/6-31G, PBE-D3(BJ)/6-31G, and PBEh-3c levels of theory. Full article

During the restoration and digitalization intervention of the Manoscritto Parmense (Ms. Parm.) 3285 codex, a 14th-century illuminated volume that contains the three books of Dante Alighieri’s Divina Commedia belonging to the Biblioteca Palatina of Parma, the deposits present in the center of some bifoliums were removed using soft bristle brushes and collected. A preliminary observation of these deposits with a stereomicroscope allowed the detection of some pigment grains of different colors, likely detached from the full-page illuminations at the beginning of each book. These grains of the pigments were then analyzed in the Bologna ENEA Research Centre through Scanning Electron Microscopy (SEM), EDX microanalysis, and micro-Raman spectroscopy, allowing the identification of the minerals or the compounds used as pigments. Consequently, some pigments that were commonly used in the Middle Ages such as gold leaf, typically employed in illuminations and the decoration of heading initials, cinnabar red, and different types of blue pigments, including traces of lapis lazuli and azurite, were identified. Full article

Fluorescence resonance energy transfer (FRET)-PCR is widely recognized for its high sensitivity and specificity in pathogen detection. However, there are some gaps in probe design when it is applied for simultaneous detection and differentiation of similar targets. This study aims to investigate the effects of the numbers and position of nucleotide mismatches (NM) in probe on PCR efficiency and melting temperature (T_m). The results indicated that NM at the center reduces amplification efficiency and T_m more significantly than NM at the 5′-terminal or 3′-terminal of the probe. Full article

The adsorption of p-aminothiophenol (PATP) on metallic nanostructures is a very interesting phenomenon that depends on many factors, and because of that, PATP is an increasingly important probe molecule in surface-enhanced Raman spectroscopy (SERS) due to its strong interaction with Ag and Au, its intense SERS signal, and its significance in molecular electronics. In our study, the SERS spectra of PATP on silver colloids were investigated and we considered several factors, such as the effect of the adsorbate concentration, the nature of the metallic nanoparticles, and the excitation wavelength. Differences between the SERS spectra recorded at high and low concentrations of PATP were explained and DFT calculations of different species were performed in order to support the experimental results. Additionally, time-dependent density-functional theory (TD-DFT) calculations were used to simulate the UV spectra of each species and to determine the MOs involved in each transition. The presence of different species of PATP adsorbed onto the metal surface gave rise to the acquisition of simultaneous SERS signals from those species and the consequent overlapping of some bands with new SERS bands coming from the dimerization of PATP. This work helped to discern which species is responsible for each SERS spectrum under particular experimental conditions. Full article

Gamma spectroscopy is an important analytical technique across various fields. Gamma spectroscopy uses the energy spectra of emitted gamma rays to examine the type and quantity of isotopes that exist in samples. Like any other analytical technique, traditional gamma spectroscopy encounters challenges that in some cases make the analysis uncertain. Machine Learning (ML) algorithms have been proposed as an approach for enhancing the precision and robustness of gamma spectroscopy. The current study introduces the basics behind ML and illustrates how they are applied in gamma spectroscopy using case studies. Major findings discussed herein demonstrate the developmental capability that ML has in improving gamma spectroscopy. Radioisotope identification, optimizing detector performance, and simplifying environmental monitoring processes have been the main areas in which ML algorithms have been deployed for improvement. These include the ability to predict and provide real-time spectrometry, among others, even though these opportunities come with their shortfalls such as the necessity for huge training datasets. This review explains that integrating ML into gamma spectroscopy marks a major change from current analytic techniques, with possible further developments in radiation detection and environmental science. It serves as very useful material for those studying or practicing AI and gamma spectroscopy and want to know more about it or need guidance on what is happening so far regarding AI integrated into gamma spectroscopy analysis. Full article

A hand-held NIR spectrophotometric method was developed, validated, and applied for the determination of tadalafil in tablets. The aim of our work was to develop analytical methods based on vibrational techniques using low-cost portable equipment. Based on different chemometric modeling, we attempted to validate the method, which gave encouraging results from the principal component analysis (PCA), DD-SIMCA, and PLS modeling. Following this, we optimized the method using an appropriate experiment plan. For validation, we used the total error approach with acceptance limits set at ±10% with a risk level of 5%. The method showed that it was possible to perform both qualitative and quantitative analysis of pharmaceutical products using low-cost portable NIR systems with chemometric tools. The developed approach enabled the completion of the first step in implementing an NIR method for quality control of tadalafil-based drugs in the DRC. Validation difficulties of the PLS method resulted from the lack of information about inter-day serial variations of spectral responses. It would be interesting to extend the study to a larger calibration interval in order to correct uncertainties that may result from the variability observed under different conditions and to verify robustness. These are the limitations of this work, but the results are nevertheless very encouraging. Full article

The effect of nuclear quadrupole coupling of a single nucleus on the rotational spectra of diatomic molecules is given. By careful selection of examples, procedures are given for the analysis of successively more complicated spectra. The microwave spectra of some alkali halides, interhalogen diatomics, and deuterium halides provide excellent examples for analysis and for student exercises. Full article