Microorganisms and Their Importance in the Food Industry: Safety, Quality and Health Properties

A special issue of Foods (ISSN 2304-8158). This special issue belongs to the section "Food Microbiology".

Deadline for manuscript submissions: closed (15 November 2023) | Viewed by 54171

Special Issue Editors


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Guest Editor
Institute of Agricultural and Environmental Research and Technology (IITAA), University of the Azores, Angra do Heroísmo, Portugal
Interests: food science and technology; food safety; antimicrobials; microbiology; probiotics; biotechnology
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Institute of Agricultural and Environmental Research and Technology (IITAA), University of the Azores, Angra do Heroísmo, Portugal
Interests: food science and technology; biochemistry; food safety; antimicrobials; microbiology; biotechnology

Special Issue Information

Dear Colleagues,

Microorganisms can play a key role in food production, mainly as a result of fermentation processes. They can be used in the production of foods not only as a strategy for food preservation but also for the improvement of specific characteristics, such as flavour, aroma, texture and digestibility. In addition, growing scientific evidence suggests that fermented foods, as well as the microorganisms associated with them, can positively impact on human health. Specific microorganisms benefit the host by correcting imbalances in intestinal microbiota; stimulating immunity; and producing a variety of bioactive compounds including vitamins, enzymes, bacteriocins, bioactive peptides, conjugates of linoleic acid (CLAs), short-chain fatty acids, gamma-aminobutyric acid (GABA) and exopolysaccharides (EPSs).

This Special Issue welcomes contributions related to this subject with topics including:

  • Identification and characterization of microorganisms in fermented foods.
  • Novel applications of microorganisms in foods.
  • Application of microorganisms and their metabolites to food preservation.
  • Novel applications of microorganisms to improve food quality.
  • Production of bioactive compounds by food-derived microorganisms with health-promoting activities.

Dr. Celia C. G. Silva
Dr. Susana C. Ribeiro
Guest Editors

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Keywords

  • food microbiota
  • fermented foods
  • food safety
  • food preservation
  • food quality
  • nutraceuticals
  • probiotics
  • bioactive compounds
  • functional foods

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Published Papers (8 papers)

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Editorial

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5 pages, 186 KiB  
Editorial
Microorganisms and Their Importance in the Food Industry: Safety, Quality and Health Properties
by Celia C. G. Silva and Susana Chaves Ribeiro
Foods 2024, 13(10), 1452; https://doi.org/10.3390/foods13101452 - 8 May 2024
Viewed by 3660
Abstract
Microorganisms can play an important role in food production, especially through fermentation processes [...] Full article

Research

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14 pages, 775 KiB  
Article
Exploiting Potential Probiotic Lactic Acid Bacteria Isolated from Chlorella vulgaris Photobioreactors as Promising Vitamin B12 Producers
by Mónica Ribeiro, Cláudia Maciel, Pedro Cruz, Helena Darmancier, Teresa Nogueira, Margarida Costa, Joana Laranjeira, Rui M. S. C. Morais and Paula Teixeira
Foods 2023, 12(17), 3277; https://doi.org/10.3390/foods12173277 - 1 Sep 2023
Cited by 4 | Viewed by 3649
Abstract
Lactic acid bacteria (LAB) have been documented as potential vitamin B12 producers and may constitute an exogenous source of cobalamin for the microalga Chlorella vulgaris, which has been described as being able to perform vitamin uptake. Hence, there is an interest in [...] Read more.
Lactic acid bacteria (LAB) have been documented as potential vitamin B12 producers and may constitute an exogenous source of cobalamin for the microalga Chlorella vulgaris, which has been described as being able to perform vitamin uptake. Hence, there is an interest in discovering novel B12-producing probiotic LAB. Therefore, the purpose of the current work was to perform a phenotype–genotype analysis of the vitamin B12 biosynthesis capacity of LAB isolated from C. vulgaris bioreactors, and investigate their probiotic potential. Among the selected strains, Lactococcus lactis E32, Levilactobacillus brevis G31, and Pediococcus pentosaceus L51 demonstrated vitamin B12 biosynthesis capacity, with the latter producing the highest (28.19 ± 2.27 pg mL−1). The genomic analysis confirmed the presence of pivotal genes involved in different steps of the biosynthetic pathway (hemL, cbiT, cobC, and cobD). Notably, P. pentosaceus L51 was the only strain harboring cobA, pduU, and pduV genes, which may provide evidence for the presence of the cobalamin operon. All strains demonstrated the capability to withstand harsh gastrointestinal conditions, although P. pentosaceus L51 was more resilient. The potential for de novo cobalamin biosynthesis and remarkable probiotic features highlighted that P. pentosaceus L51 may be considered the most promising candidate strain for developing high-content vitamin B12 formulations. Full article
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10 pages, 603 KiB  
Article
Tenebrio molitor (Linnaeus, 1758): Microbiological Screening of Feed for a Safe Food Choice
by Barbara Pöllinger-Zierler, Andrea Lienhard, Chiara Mayer, Simon Berner, René Rehorska, Angela Schöpfer and Monika Grasser
Foods 2023, 12(11), 2139; https://doi.org/10.3390/foods12112139 - 25 May 2023
Cited by 4 | Viewed by 2255
Abstract
As a result of the increasing focus on alternative protein sources which are ideally still sustainable, the yellow mealworm, Tenebrio molitor, has come into focus. To verify its suitability as a food source in relation to human health, an analysis of the [...] Read more.
As a result of the increasing focus on alternative protein sources which are ideally still sustainable, the yellow mealworm, Tenebrio molitor, has come into focus. To verify its suitability as a food source in relation to human health, an analysis of the microbiome of larvae of T. molitor is pertinent. Subsequently, the focus of this study was, on the one hand, to analyze the influence of the substrate on the microbial load of the larvae microbiome, and, on the other hand, to determine which processing methods ensure the risk-free consumption of mealworms. For this purpose, mealworms were grown on 10 different substrates derived from by-products of food production (malt residual pellets, corn germ meal, chestnut breakage and meal, wheat bran, bread remains, draff, nettle, hemp seed oil cake, oyster mushrooms with coffee grounds, pumpkin seed oil cake) and microbial loads were analyzed using different selective media. Further starvation/defecation and heating (850 W for 10 min) methods were used to investigate how the reduction of microorganisms is enabled by these methods. The results showed that there was no significant relationship between the microbial load of the substrate and the mealworm. Starvation and defecation led to a lower stock of microorganisms. Heating led to a significant microbial reduction in non-defecated mealworms. The group of defecated and heated mealworms showed no detectable microbial load. In conclusion, firstly, the choice of substrate showed no effect on the microbial load of larvae of Tenebrio molitor and secondly, heating and starvation allow risk-free consumption. This study makes an important contribution for evaluating the safety of mealworms as a sustainable protein source in human nutrition. Full article
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12 pages, 1343 KiB  
Article
Microbiological Characterization of Protected Designation of Origin Serra da Estrela Cheese
by Rui Rocha, Nélson Couto, Ricardo Pereira Pinto, Manuela Vaz-Velho, Paulo Fernandes and Joana Santos
Foods 2023, 12(10), 2008; https://doi.org/10.3390/foods12102008 - 16 May 2023
Cited by 3 | Viewed by 1292
Abstract
Serra da Estrela is the oldest and most recognizable traditional protected designation of origin (PDO) cheese from Portugal. It has been extensively studied over the years, but the latest microbial characterization is 20 years old. Hence, this work aimed to perform an updated [...] Read more.
Serra da Estrela is the oldest and most recognizable traditional protected designation of origin (PDO) cheese from Portugal. It has been extensively studied over the years, but the latest microbial characterization is 20 years old. Hence, this work aimed to perform an updated characterization of Serra da Estrela PDO cheeses and raw materials. Our analysis showed that lactic acid bacteria content on Serra da Estrela cheeses exceeded 8.8 log CFUsg−1, in all analyzed samples, with lactococci, lactobacilli and Leuconostoc spp. predominating over enterococci strains. Moreover, lactococci and lactobacilli abundance increased across the production season, while enterococci dropped considerably in late manufactures. Lastly, Leuconostoc spp. content remained unchanged in all analyzed periods. A correspondence analysis showed that L. paracasei, L. lactis, E. durans, E. faecium and L. mesenteroides are transversal in Serra da Estrela cheese manufacturing and were closely associated with milk, curd and cheese matrices. Additionally, L. casei, L. plantarum and L. curvatus were specifically associated with cheese matrices, possibly active during ripening and contributing for the development of these cheeses’ organoleptic characteristics. Full article
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18 pages, 698 KiB  
Article
Microbial Characterization of Retail Cocoa Powders and Chocolate Bars of Five Brands Sold in Italian Supermarkets
by Lucilla Iacumin, Michela Pellegrini, Andrea Colautti, Elisabetta Orecchia and Giuseppe Comi
Foods 2022, 11(18), 2753; https://doi.org/10.3390/foods11182753 - 7 Sep 2022
Cited by 4 | Viewed by 2810
Abstract
A microbial characterization of cocoa powder and chocolate bars of three batches of five different brands sold in Italian markets was performed. The results showed a variable microbial population consisting of mesophilic and thermophilic spore formation in both types of products. The chocolate [...] Read more.
A microbial characterization of cocoa powder and chocolate bars of three batches of five different brands sold in Italian markets was performed. The results showed a variable microbial population consisting of mesophilic and thermophilic spore formation in both types of products. The chocolate bars were also contaminated with molds of environmental origin. Bacillus spp. and Geobacillus spp. were found in both products. The chocolate bars were also contaminated by molds belonging to the genera Penicillium and Cladosporium. The sporogenous strains mainly originate from the raw materials, i.e., cocoa beans, as the heat treatments involved (roasting of the beans and conching of the chocolate) are not sufficient to reach commercial sterility. Furthermore, the identified spore-forming species have often been isolated from cocoa beans. The molds isolated from chocolate seem to have an origin strictly linked to the final phases of production (environment and packaging). However, the level of contaminants is limited (<2 log CFU/g); the molds do not develop in both products due to their low Aw (<0.6) and do not affect the safety of the products. However, a case of mold development in chocolate bars was observed. Among the isolated molds, only Penicillium lanosocoeruleum demonstrated a high xero-tolerance and grew under some conditions on chocolate bars. Its growth could be explained by a cocoa butter bloom accompanied by the presence of humidity originating from the bloom or acquired during packaging. Full article
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16 pages, 5066 KiB  
Article
Whole-Genome Sequencing of a Potential Ester-Synthesizing Bacterium Isolated from Fermented Golden Pomfret and Identification of Its Lipase Encoding Genes
by Huifang Wang, Yanyan Wu and Yueqi Wang
Foods 2022, 11(13), 1954; https://doi.org/10.3390/foods11131954 - 30 Jun 2022
Cited by 5 | Viewed by 2204
Abstract
Microbial ester synthases are regarded as valuable catalysts in the food industry. Here, one strain of Acinetobacter venetianus with ester synthase-production capacity, SCSMX-3, was isolated from traditional fermented golden pomfret. It exhibited good growth in mesophilic, low salt, and slightly alkaline environments. The [...] Read more.
Microbial ester synthases are regarded as valuable catalysts in the food industry. Here, one strain of Acinetobacter venetianus with ester synthase-production capacity, SCSMX-3, was isolated from traditional fermented golden pomfret. It exhibited good growth in mesophilic, low salt, and slightly alkaline environments. The ester synthase produced by SCSMX-3 displayed maximum activity at pH 8.0 and 35 °C. Genome sequencing revealed that the strain contains one circular chromosome of 336313 bp and two circular plasmids (plasmid A-14424 bp and plasmid B-11249 bp). Six CRISPR structures enhance the genomic stability of SCSMX-3 and provide the opportunity to create new functional strains. Gene function analysis indicated that SCSMX-3 produces the necessary enzymes for survival under different conditions and for flavor substance synthesis. Furthermore, 49 genes encoding enzymes associated with lipid metabolism, including three triacylglycerol lipases and two esterases, were identified through the NCBI Non-Redundant Protein Database. The lipase encoded by gene0302 belongs to the GX group and the abH15.02 (Burkholderia cepacia lipase) homolog of the abH15 superfamily. Our results shed light on the genomic diversity of and lipid metabolism in A. venetianus isolated from fermented golden pomfret, laying a foundation for the exploration of new ester synthases to improve the flavor of fermented fish products. Full article
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Review

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19 pages, 10354 KiB  
Review
Current Trends in the Production of Probiotic Formulations
by Jakub Kiepś and Radosław Dembczyński
Foods 2022, 11(15), 2330; https://doi.org/10.3390/foods11152330 - 4 Aug 2022
Cited by 57 | Viewed by 15693
Abstract
Preparations containing probiotic strains of bacteria have a beneficial effect on human and animal health. The benefits of probiotics translate into an increased interest in techniques for the preservation of microorganisms. This review compares different drying methods and their improvements, with specific reference [...] Read more.
Preparations containing probiotic strains of bacteria have a beneficial effect on human and animal health. The benefits of probiotics translate into an increased interest in techniques for the preservation of microorganisms. This review compares different drying methods and their improvements, with specific reference to processing conditions, microorganisms, and protective substances. It also highlights some factors that may influence the quality and stability of the final probiotic preparations, including thermal, osmotic, oxidative, and acidic stresses, as well as dehydration and shear forces. Processing and storage result in the loss of viability and stability in probiotic formulations. Herein, the addition of protective substances, the optimization of process parameters, and the adaptation of cells to stress factors before drying are described as countermeasures to these challenges. The latest trends and developments in the fields of drying technologies and probiotic production are also discussed. These developments include novel application methods, controlled release, the use of food matrices, and the use of analytical methods to determine the viability of probiotic bacteria. Full article
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32 pages, 1128 KiB  
Review
Lactic Acid Bacteria in Raw-Milk Cheeses: From Starter Cultures to Probiotic Functions
by Márcia C. Coelho, Francisco Xavier Malcata and Célia C. G. Silva
Foods 2022, 11(15), 2276; https://doi.org/10.3390/foods11152276 - 29 Jul 2022
Cited by 83 | Viewed by 10426
Abstract
Traditional cheeses produced from raw milk exhibit a complex microbiota, characterized by a sequence of different microorganisms from milk coagulation and throughout maturation. Lactic acid bacteria (LAB) play an essential role in traditional cheese making, either as starter cultures that cause the rapid [...] Read more.
Traditional cheeses produced from raw milk exhibit a complex microbiota, characterized by a sequence of different microorganisms from milk coagulation and throughout maturation. Lactic acid bacteria (LAB) play an essential role in traditional cheese making, either as starter cultures that cause the rapid acidification of milk or as secondary microbiota that play an important role during cheese ripening. The enzymes produced by such dynamic LAB communities in raw milk are crucial, since they support proteolysis and lipolysis as chief drivers of flavor and texture of cheese. Recently, several LAB species have been characterized and used as probiotics that successfully promote human health. This review highlights the latest trends encompassing LAB acting in traditional raw milk cheeses (from cow, sheep, and goat milk), and their potential as probiotics and producers of bioactive compounds with health-promoting effects. Full article
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