Biology

22 pages, 6396 KiB

Open AccessArticle

Identifications of Common Species and Descriptions of Two New Species of Siphonaria (Mollusca: Gastropoda) in China

by Guochen Zang, Jiahui Wang, Peizhen Ma, Cui Li, Ya Chen, Zeyu Tang and Haiyan Wang

Biology 2025, 14(1), 103; https://doi.org/10.3390/biology14010103 - 20 Jan 2025

Viewed by 423

Abstract

The genus Siphonaria G [...] Full article

(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)

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14 pages, 15764 KiB

Open AccessArticle

Puerarin Promotes the Migration and Differentiation of Myoblasts by Activating the FAK and PI3K/AKT Signaling Pathways

by Xiaofeng Fang, Hangjia Xu, Zhaoxin Fan, Hongge Yang, Yan Huang, Lin Xu, Yiwei Rong, Wei Ma, Liubao Pei and Hongsheng Liang

Biology 2025, 14(1), 102; https://doi.org/10.3390/biology14010102 - 20 Jan 2025

Viewed by 571

Abstract

Puerarin, a flavonoid compound present in the roots of radix puerariae, contributes to the development of tissues such as bone and nerve, but its role in skeletal muscle regeneration remains unclear. In this study, we employed C2C12 myoblasts and barium chloride (BaCl [...] Read more.

Puerarin, a flavonoid compound present in the roots of radix puerariae, contributes to the development of tissues such as bone and nerve, but its role in skeletal muscle regeneration remains unclear. In this study, we employed C2C12 myoblasts and barium chloride (BaCl₂)-based muscle injury models to investigate the effects of puerarin on myogenesis. Our study showed that puerarin stimulated the migration and differentiation of myoblasts in vitro. For the mechanism study, we found that puerarin’s influence on cell migration was associated with the activation of FAK signaling; additionally, puerarin induced myoblast differentiation by upregulating the PI3K/AKT pathway. We also found that puerarin treatment could improve muscle regeneration following muscle injury. Taken together, our data indicate that puerarin facilitated myogenesis by promoting migration and differentiation, which suggests puerarin as a new candidate drug for the treatment of muscle loss diseases. Full article

(This article belongs to the Special Issue Repair and Regeneration of Skeletal Muscle)

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15 pages, 3232 KiB

Open AccessArticle

Analysis on Bacterial Community of Noctiluca scintillans Algal Blooms Near Pingtan Island, China

by Yunguang Liu, Yutong Zhang, Haiyan Yao, Zewen Zheng, Wenbo Zhao and Gang Lin

Biology 2025, 14(1), 101; https://doi.org/10.3390/biology14010101 - 20 Jan 2025

Viewed by 446

Abstract

Noctiluca scintillans, known as a global red tide species, is a common red tide species found in Pingtan Island. To examine the bacterial community structure in different environments during the red tide period of N. scintillans on Pingtan Island, samples were collected [...] Read more.

Noctiluca scintillans, known as a global red tide species, is a common red tide species found in Pingtan Island. To examine the bacterial community structure in different environments during the red tide period of N. scintillans on Pingtan Island, samples were collected from the Algal Bloom Area (ABA), Transition Area (TA), and Non-Algal Bloom Area (NBA) on 6 April 2022, and the environmental physicochemical factors and bacterial community were determined. The outbreak of N. scintillans red tide significantly impacted the water quality and bacterial community structure in the affected sea area. The water quality in the ABA has deteriorated markedly, with the contents of COD, NH₄⁺-N, and PO₄³⁻ in the ABA being significantly higher than those in the TA and NBA, while the pH is significantly lower than that in the TA and NBA. The richness, diversity, and evenness of the bacterial community in the ABA are all lower than those of the TA and NBA. For instance, the Shannon index values of the three sampling points are 4.41, 5.41, and 6.37, respectively. At the phylum level, the dominant bacterial phyla in the ABA are Proteobacteria, Firmicutes, and Cyanobacteria; in the TA, they are Proteobacteria, Bacteroidetes, and Firmicutes; and in the NBA, they are Proteobacteria, Bacteroidetes, and Cyanobacteria. At the genus level, the dominant bacterial genera in the ABA are Vibrio, Carnobacterium, Candidatus_Megaira, Planktomarina, and Pseudoalteromonas; in the TA, they are Vibrio, Planktomarina, Lentibacter, Glaciecola, and Jannaschia; and in the NBA, they are Planktomarina, Amylibacter, NS5_marine_group, Aurantivirga, and marine_metagenome. In the ABA, the combined proportion of Vibrio and Carnobacterium exceeds 50%, with Vibrio_splendidus accounting for 93% of the total Vibrio population. These research results can provide a scientific basis for clarifying the environmental characteristics and bacterial composition during the large-scale N. scintillans red tide in Pingtan Island. Full article

(This article belongs to the Special Issue Biology, Ecology and Management of Harmful Algae)

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21 pages, 5699 KiB

Open AccessArticle

Evaluation of Different Few-Shot Learning Methods in the Plant Disease Classification Domain

by Alexander Uzhinskiy

Biology 2025, 14(1), 99; https://doi.org/10.3390/biology14010099 - 19 Jan 2025

Viewed by 420

Abstract

Early detection of plant diseases is crucial for agro-holdings, farmers, and smallholders. Various neural network architectures and training methods have been employed to identify optimal solutions for plant disease classification. However, research applying one-shot or few-shot learning approaches, based on similarity determination, to [...] Read more.

Early detection of plant diseases is crucial for agro-holdings, farmers, and smallholders. Various neural network architectures and training methods have been employed to identify optimal solutions for plant disease classification. However, research applying one-shot or few-shot learning approaches, based on similarity determination, to the plantdisease classification domain remains limited. This study evaluates different loss functions used in similarity learning, including Contrastive, Triplet, Quadruplet, SphereFace, CosFace, and ArcFace, alongside various backbone networks, such as MobileNet, EfficientNet, ConvNeXt, and ResNeXt. Custom datasets of real-life images, comprising over 4000 samples across 68 classes of plant diseases, pests, and their effects, were utilized. The experiments evaluate standard transfer learning approaches alongside similarity learning methods based on two classes of loss function. Results demonstrate the superiority of cosine-based methods over Siamese networks in embedding extraction for disease classification. Effective approaches for model organization and training are determined. Additionally, the impact of data normalization is tested, and the generalization ability of the models is assessed using a special dataset consisting of 400 images of difficult-to-identify plant disease cases. Full article

(This article belongs to the Section Theoretical Biology and Biomathematics)

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26 pages, 1360 KiB

Open AccessReview

Epigenetic Mechanisms Underlying Sex Differences in Neurodegenerative Diseases

by Andrea Stoccoro

Biology 2025, 14(1), 98; https://doi.org/10.3390/biology14010098 - 19 Jan 2025

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Abstract

Neurodegenerative diseases are characterized by profound differences between females and males in terms of incidence, clinical presentation, and disease progression. Furthermore, there is evidence suggesting that differences in sensitivity to medical treatments may exist between the two sexes. Although the role of sex [...] Read more.

Neurodegenerative diseases are characterized by profound differences between females and males in terms of incidence, clinical presentation, and disease progression. Furthermore, there is evidence suggesting that differences in sensitivity to medical treatments may exist between the two sexes. Although the role of sex hormones and sex chromosomes in driving differential susceptibility to these diseases is well-established, the molecular alterations underlying these differences remain poorly understood. Epigenetic mechanisms, including DNA methylation, histone tail modifications, and the activity of non-coding RNAs, are strongly implicated in the pathogenesis of neurodegenerative diseases. While it is known that epigenetic mechanisms play a crucial role in sexual differentiation and that distinct epigenetic patterns characterize females and males, sex-specific epigenetic patterns have been largely overlooked in studies aiming to identify epigenetic alterations associated with neurodegenerative diseases. This review aims to provide an overview of sex differences in epigenetic mechanisms, the role of sex-specific epigenetic processes in the central nervous system, and the main evidence of sex-specific epigenetic alterations in three neurodegenerative diseases, including Alzheimer’s disease, Parkinson’s disease, and amyotrophic lateral sclerosis. Understanding the sex-related differences of these diseases is essential for developing personalized treatments and interventions that account for the unique epigenetic landscapes of each sex. Full article

(This article belongs to the Special Issue Epigenetic Modifications and Changes in Neurodegenerative Diseases)

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24 pages, 7291 KiB

Open AccessArticle

Impact of Seasonal Atmospheric Factors and Photoperiod on Floral Biology, Plant–Pollinator Interactions, and Plant Reproduction on Turnera ulmifolia L. (Passifloraceae)

by Ujjwal Layek, Nandita Das, Arabinda Samanta and Prakash Karmakar

Biology 2025, 14(1), 100; https://doi.org/10.3390/biology14010100 - 19 Jan 2025

Viewed by 1025

Abstract

Reproductive traits and plant–pollinator interactions largely depend on seasonal weather conditions, which are species-specific. Turnera ulmifolia is an ornamental plant distributed worldwide. There is little information about plant species’ reproductive ecology and environmental factors’ impact on it. Here, we aimed to examine the [...] Read more.

Reproductive traits and plant–pollinator interactions largely depend on seasonal weather conditions, which are species-specific. Turnera ulmifolia is an ornamental plant distributed worldwide. There is little information about plant species’ reproductive ecology and environmental factors’ impact on it. Here, we aimed to examine the effects of seasonal atmospheric factors (e.g., temperature, light, relative humidity, rainfall) and photoperiod on flowering, interactions with flower visitors, and the reproductive success of Turnera ulmifolia in West Bengal, India. Flowering intensity peaked in hot summers and dropped in cold winters, correlating positively with temperature and humidity. Flower opening and closing occurred earlier on hot days, while flower longevity increased in winter, showing a negative correlation with temperature and humidity. Pollen and ovule production were lower in cold weather, positively linked to temperature and humidity. The self-compatible plant was moderately dependent on pollinators and had no pollination deficit in open conditions. Visitor abundance, richness, and diversity varied season-wise, with higher values during spring–summer. Based on pollinating agents, the plant showed multiple pollination modes (e.g., melittophily, myophily, myrmecophily, and psychophily). Effective pollinators were Amegilla zonata, Borbo cinnara, Halictus acrocephalus, Nomia (Curvinomia) strigata, and Tetragonula iridipennis. The fruit set (%) did not differ significantly season-wise, but the seed set remained higher in the hot days of summer than in cold winter. Therefore, it can be concluded that atmospheric factors and photoperiod significantly impact floral traits, plant–pollinator interactions, and plant reproduction. Full article

(This article belongs to the Special Issue Pollination Biology)

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20 pages, 3906 KiB

Open AccessArticle

Beclin 1-Mediated Autophagy Is Potentiated by an Interaction with the Neuronal Adaptor FE65

by Wai Wa Ray Chan, Jessica Chow, Dennis Dik-Long Chau, Yuqi Zhai and Kwok-Fai Lau

Biology 2025, 14(1), 97; https://doi.org/10.3390/biology14010097 - 18 Jan 2025

Viewed by 643

Abstract

Autophagy is a vital cellular pathway in eukaryotic cells, including neurons, where it plays significant roles in neurodevelopment and maintenance. A crucial step in autophagy is the formation of the class III phosphatidylinositol 3-kinase complex 1 (PI3KC3-C1), which is essential for initiating autophagosome [...] Read more.

Autophagy is a vital cellular pathway in eukaryotic cells, including neurons, where it plays significant roles in neurodevelopment and maintenance. A crucial step in autophagy is the formation of the class III phosphatidylinositol 3-kinase complex 1 (PI3KC3-C1), which is essential for initiating autophagosome biogenesis. Beclin 1 is the key component of PI3KC3-C1, and its interactors have been reported to affect autophagy. The brain-enriched adaptor protein FE65 has been shown to interact with Alzheimer’s disease amyloid precursor protein (APP) to alter the processing of APP. Additionally, FE65 has been implicated in various cellular pathways, including autophagy. We demonstrate here that FE65 positively regulates autophagy. FE65, through its C-terminus, has been shown to interact with Beclin 1. Notably, the overexpression of FE65 enhances Beclin 1-mediated autophagy, whereas this process is attenuated in FE65 knockout cells. Moreover, the stimulatory effect of FE65 on Beclin 1-mediated autophagy is diminished by an FE65 C-terminus deletion mutant that disrupts the FE65–Beclin 1 interaction. Lastly, we have found that the FE65-Beclin 1 interaction modulates the kinase activity of the PI3KC3-C1 complex. Together, we have identified FE65 as a novel Beclin 1 interactor, and this interaction potentiates autophagy. Full article

(This article belongs to the Section Biochemistry and Molecular Biology)

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13 pages, 1504 KiB

Open AccessArticle

Rap1 Guanosine Triphosphate Hydrolase (GTPase) Regulates Shear Stress-Mediated Adhesion of Mesenchymal Stromal Cells

by Melanie Giesen, Erika Fleck, Jürgen Scheele, Tanja Nicole Hartmann and Reinhard Henschler

Biology 2025, 14(1), 96; https://doi.org/10.3390/biology14010096 - 18 Jan 2025

Viewed by 516

Abstract

Intravenously transplanted mesenchymal stromal cells (MSCs) have been shown to interact with endothelial cells and to migrate to tissues. However, intracellular signals regulating MSC migration are still incompletely understood. Here, we analyzed the role of Rap1 GTPase in the migration of human bone [...] Read more.

Intravenously transplanted mesenchymal stromal cells (MSCs) have been shown to interact with endothelial cells and to migrate to tissues. However, intracellular signals regulating MSC migration are still incompletely understood. Here, we analyzed the role of Rap1 GTPase in the migration of human bone marrow-derived MSCs in vitro and in short-term homing in mice in vivo. MSCs expressed both Rap1A and Rap1B mRNAs, which were downregulated after treatment with siRNA against Rap1A and/or B. In a flow chamber model with pre-established human umbilical vein endothelial cells (HUVECs), Rap1A/B downregulated MSCs interacted for longer distances before arrest, indicating adhesion defects. CXCL12-induced adhesion of MSCs on immobilized Vascular Cell Adhesion Molecule (VCAM)-1 was also decreased after the downregulation of Rap1A, Rap1B, or both, as was CXCL12-induced transwell migration. In a competitive murine short-term homing model with i.v. co-injection of Rap1A+B siRNA-treated and control MSCs that were labeled with PKH 26 and PKH 67 fluorescent dyes, the Rap1A+B siRNA-treated MSCs were detected at increased frequencies in blood, liver, and spleen compared to control MSCs. Thus, Rap1 GTPase modulates the adhesion and migration of MSCs in vitro and may increase the bio-availability of i.v.-transplanted MSCs in tissues in a murine model. Full article

(This article belongs to the Section Immunology)

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18 pages, 972 KiB

Open AccessArticle

Chia (Salvia hispanica) Seed Oil Modulates the Haemato-Immunological Response, Antioxidative Status and Cytokine Gene Expression of Tropical Freshwater Teleost, Labeo rohita

by Sanjay Kumar Gupta, Rajan Gupta, Akruti Gupta, Md Javed Foysal and Kishore Kumar Krishnani

Biology 2025, 14(1), 95; https://doi.org/10.3390/biology14010095 - 18 Jan 2025

Viewed by 488

Abstract

The present investigation attempts to evaluate the impact of the dietary inclusion of chia (Salvia hispanica) seed oil (CSO) on the indices of haemato-immunology, metabolic enzymes, and expression of immune-responsive cytokine genes in Labeo rohita (rohu) fingerlings. The responses were observed [...] Read more.

The present investigation attempts to evaluate the impact of the dietary inclusion of chia (Salvia hispanica) seed oil (CSO) on the indices of haemato-immunology, metabolic enzymes, and expression of immune-responsive cytokine genes in Labeo rohita (rohu) fingerlings. The responses were observed in a 60-day feeding trial, set up with a total of 180 rohu fingerlings (19.74 ± 0.33 g) randomly allocated to four treatment groups with three replicates each. The groups were fed with a basal diet incorporated with 0%, 1.0%, 2.0%, and 3.0% CSO, denoted as control, CSO (1), CSO (2), and CSO (3), respectively. Significant (p < 0.05) augmentation of hematological indices such as total protein and globulin levels was observed in the group fed a 1.0% CSO-supplemented diet. Serum glucose, cholesterol, triglycerides, and complement reactive protein levels declined, whereas marker anti-oxidative enzymes (SOD, CAT, and GST) and protein metabolic enzymes (ALT and AST) increased (p < 0.05) in the lowest CSO-supplemented group. A significant upregulation of inflammatory cytokine viz. IL-1β, IFN-γ, TNF-α, and TLR22 alongside downregulation of IL-10 was noted in various tissues. The results support the inclusion of 1.0% CSO as a prospective dietary vegan substitute to fish oil in rohu aquaculture. Full article

(This article belongs to the Section Physiology)

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16 pages, 1422 KiB

Open AccessArticle

Melatonin Promotes Yield Increase in Wheat by Regulating Its Antioxidant System and Growth Under Drought Stress

by Xue Li, Jia Liu, Cuiping Zhang, Ze Liu, Xiang Guo, Shaoxiang Li, Hongsheng Li, Kun Liu, Kunzhi Li and Mingliang Ding

Biology 2025, 14(1), 94; https://doi.org/10.3390/biology14010094 - 18 Jan 2025

Viewed by 398

Abstract

Drought stress constitutes a major challenge to wheat production. Melatonin plays a vital role in plants’ resistance to drought stress. Nevertheless, the influence of melatonin seed coating on the drought resistance ability of wheat remains unclear. Hence, in this study, wheat (Yunmai 112) [...] Read more.

Drought stress constitutes a major challenge to wheat production. Melatonin plays a vital role in plants’ resistance to drought stress. Nevertheless, the influence of melatonin seed coating on the drought resistance ability of wheat remains unclear. Hence, in this study, wheat (Yunmai 112) was chosen as the experimental material. The research results indicated that 100 µM exogenous melatonin treatment enhanced the germination rate of wheat seeds by 11% compared to the CK group. Melatonin seed coating (100 or 200 µM) significantly inhibited the accumulation of ROS in wheat seedlings under drought stress conditions and facilitated the growth of wheat seedlings. Then, 100 µM melatonin seed coating elevated the activity of antioxidant enzymes (CAT, Cu/Zn-SOD, POD, and T-GSH) in wheat seedlings and strengthened the resistance of wheat to drought stress. In contrast to the control, 100 or 200 µM melatonin seed coating significantly raised the contents of soluble protein and chlorophyll in wheat seedlings. Further studies demonstrated that 100 µM melatonin seed coating promoted the increase in the thousand-grain weight and yield of wheat under drought stress. Taking together, melatonin seed coating is an effective approach for enhancing the stress resistance and the yield of wheat under drought stress. Full article

(This article belongs to the Special Issue Molecular Basis of Seed Germination and Dormancy)

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22 pages, 4614 KiB

Open AccessReview

DICER1: The Argonaute Endonuclease Family Member and Its Role in Pediatric and Youth Pathology

by Consolato M. Sergi and Fabrizio Minervini

Biology 2025, 14(1), 93; https://doi.org/10.3390/biology14010093 - 18 Jan 2025

Viewed by 533

Abstract

In 2001, two enzyme-encoding genes were recognized in the fruit fly Drosophila melanogaster. The genetic material, labeled Dicer-1 and Dicer-2, encodes ribonuclease-type enzymes with slightly diverse target substrates. The human orthologue is DICER1. It is a gene, which has been [...] Read more.

In 2001, two enzyme-encoding genes were recognized in the fruit fly Drosophila melanogaster. The genetic material, labeled Dicer-1 and Dicer-2, encodes ribonuclease-type enzymes with slightly diverse target substrates. The human orthologue is DICER1. It is a gene, which has been positioned on chromosome 14q32.13. It contains 27 exons, which are linking the two enzyme domains. DICER1 is found in all organ systems. It has been proved that it is paramount in human development. The protein determined by DICER1 is a ribonuclease (RNase). This RNase belongs to the RNase III superfamily, formally known as ’endoribonuclease’. It has been determined that the function of RNase III proteins is set to identify and degrade double-stranded molecules of RNA. DICER1 is a vital “housekeeping” gene. The multi-domain enzyme is key for small RNA processing. This enzyme functions in numerous pathways, including RNA interference paths, DNA damage renovation, and response to viruses. At the protein level, DICER is also involved in several human diseases, of which the pleuro-pulmonary blastoma is probably the most egregious entity. Numerous studies have determined the full range of DICER1 functions and the corresponding relationship to tumorigenic and non-neoplastic diseases. In fact, genetic mutations (somatic and germline) have been detected in DICER1 and are genetically associated with at least two clinical syndromes: DICER1 syndrome and GLOW syndrome. The ubiquity of this enzyme in the human body makes it an exquisite target for nanotechnology-supported therapies and repurposing drug approaches. Full article

(This article belongs to the Special Issue Editorial Board Members' Collection Series: Cell Signaling in Health and Disease)

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17 pages, 612 KiB

Open AccessReview

The Genetic and Epigenetic Arms of Human Ageing and Longevity

by Elena Ciaglia, Francesco Montella, Valentina Lopardo, Cristina Basile, Roberta Maria Esposito, Clara Maglio, Roberta Longo, Anna Maciag and Annibale Alessandro Puca

Biology 2025, 14(1), 92; https://doi.org/10.3390/biology14010092 - 18 Jan 2025

Viewed by 809

Abstract

This proposed review aims to shed light on the major genetic and epigenetic contributions to the ageing process and longevity of individuals. In this context, we summarize the state of knowledge on the most important longevity and ageing genetic variants, and their interactions [...] Read more.

This proposed review aims to shed light on the major genetic and epigenetic contributions to the ageing process and longevity of individuals. In this context, we summarize the state of knowledge on the most important longevity and ageing genetic variants, and their interactions with the environment, in achieving a healthy lifespan. We also explore the contribution of lifestyle and the influence of non-heritable environmental factors on ageing (i.e., epigenetics). Accordingly, we discuss the role of inflammageing as one of the major targets to overcome morbidity and mortality in older people for the maintenance of healthy ageing. This more integrated view of longevity will display not only the underlying mechanisms at play but also invites the reader to rethink both our ageing process and our attitudes toward age. Full article

(This article belongs to the Special Issue Genetic and Epigenetic Mechanisms of Longevity and Aging, Volume II)

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13 pages, 1379 KiB

Open AccessArticle

Parameterization of the Differences in Neural Oscillations Recorded by Wearable Magnetoencephalography for Chinese Semantic Cognition

by Xiaoyu Liang, Huanqi Wu, Yuyu Ma, Changzeng Liu and Xiaolin Ning

Biology 2025, 14(1), 91; https://doi.org/10.3390/biology14010091 - 18 Jan 2025

Viewed by 563

Abstract

Neural oscillations observed during semantic processing embody the function of brain language processing. Precise parameterization of the differences in these oscillations across various semantics from a time–frequency perspective is pivotal for elucidating the mechanisms of brain language processing. The superlet transform and cluster [...] Read more.

Neural oscillations observed during semantic processing embody the function of brain language processing. Precise parameterization of the differences in these oscillations across various semantics from a time–frequency perspective is pivotal for elucidating the mechanisms of brain language processing. The superlet transform and cluster depth test were used to compute the time–frequency representation of oscillatory difference (ODTFR) between neural activities recorded by optically pumped magnetometer-based magnetoencephalography (OPM-MEG) during processing congruent and incongruent Chinese semantics. Subsequently, ODTFR was parameterized based on the definition of local events. Finally, this study calculated the specific time–frequency values at which oscillation differences occurred in multiple auditory-language-processing regions. It was found that these oscillatory differences appeared in most regions and were mainly concentrated in the beta band. The average peak frequency of these oscillatory differences was 15.7 Hz, and the average peak time was 457 ms. These findings offer a fresh perspective on the neural mechanisms underlying the processing of distinct Chinese semantics and provide references and insights for analyzing language-related brain activities recorded by OPM-MEG. Full article

(This article belongs to the Special Issue Recent Advances in Neuroscience: Theoretical, Applied, and Experimental Research)

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22 pages, 5209 KiB

Open AccessArticle

Effects of Lysophospholipids on the Antioxidant Capacity, Digestive Performance, and Intestinal Microbiota of Litopenaeus vannamei

by Hailiang Yan, Yun Wang, Hong Liang, Yafei Duan, Jun Wang, Chuanpeng Zhou and Zhong Huang

Biology 2025, 14(1), 90; https://doi.org/10.3390/biology14010090 - 17 Jan 2025

Viewed by 469

Abstract

This study seeks to assess the impact of varying concentrations of lysophospholipids on the antioxidant capacity, digestive performance, and intestinal microbiota of L. vannamei. A total of 840 shrimp, with an average initial weight of 2.22 ± 0.11 g, were randomly distributed [...] Read more.

This study seeks to assess the impact of varying concentrations of lysophospholipids on the antioxidant capacity, digestive performance, and intestinal microbiota of L. vannamei. A total of 840 shrimp, with an average initial weight of 2.22 ± 0.11 g, were randomly distributed across 28 aquaculture tanks (30 shrimp per tank), organized into 7 distinct treatment groups, each comprising 4 replicates. The control group (DL2) was administered a basal diet formula supplemented with 2% soy lecithin, whereas the experimental groups received lysophospholipids at varying concentrations of 0% (RL0), 0.1% (RL0.1), 0.5% (RL0.5), 1% (RL1), 1.5% (RL1.5), and 2% (RL2). The results revealed that the total antioxidant capacity (T-AOC) level in the RL0.1 group was significantly elevated compared to the DL2 and RL2 groups (p < 0.05). Furthermore, glutathione peroxidase (GSH-Px) and catalase (CAT) activities were markedly higher in the RL1 and RL1.5 groups relative to other groups (p < 0.05). Superoxide dismutase (SOD) activity exhibited a significant increase across all lysophospholipid-supplemented groups when compared to the DL2 group (p < 0.05). Malondialdehyde (MDA) levels were notably elevated in the RL0.5, RL1.5, and RL2 groups relative to the other groups (p < 0.05). Regarding antioxidant-related genes in the hemocytes, the relative expression levels of Nrf1, Nrf2, GPx, SOD, CAT, and Hippo were significantly higher in the RL0.5 and RL1 groups compared to the DL2 group (p < 0.05). Additionally, the relative expression levels of GPx and SOD were significantly elevated in the RL2 group compared to the DL2 group (p < 0.05). In the intestinal tract, the activities of trypsin and α-amylase (AMS) were significantly elevated in the RL0.1, RL0.5, and RL1 groups compared to the DL2 group (p < 0.05). Additionally, the RL0.1 group demonstrated significantly higher lipase (LPS) activity than the other groups supplemented with lysophospholipids (p < 0.05). Furthermore, the relative expression levels of the trypsin and α-amylase genes were significantly increased in the RL1 and RL1.5 groups in comparison to the DL2 group (p < 0.05). Sequencing analysis of the intestinal microbiota indicated that the incorporation of lysophospholipids resulted in an enhancement of the composition and structure of the intestinal microbiota. The functional abundance of the intestinal microbiome was primarily enriched in metabolic pathways. Overall, the incorporation of lysophospholipids into the diet exerted a beneficial effect on the antioxidant capacity, digestive performance, and intestinal microbiota of L. vannamei, especially with the supplementation of 0.1% lysophospholipids. Full article

(This article belongs to the Special Issue Aquatic Animal Nutrition and Feed)

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9 pages, 1586 KiB

Open AccessCommunication

Investigation and Identification of Fungal Diseases of Aloe barbadensis in China

by Guohui Zhang, Qingjia Wan, Xiangyang Li and Jie Deng

Biology 2025, 14(1), 89; https://doi.org/10.3390/biology14010089 - 17 Jan 2025

Viewed by 391

Abstract

The Aloe barbadensis industry plays an important role in the economic development of Yuanjiang county of Yuxi city in Yunnan province, China. In order to reduce the harm of diseases and ensure the quality of products, the occurrence of A. barbadensis was investigated. [...] Read more.

The Aloe barbadensis industry plays an important role in the economic development of Yuanjiang county of Yuxi city in Yunnan province, China. In order to reduce the harm of diseases and ensure the quality of products, the occurrence of A. barbadensis was investigated. The pathogenic fungi of wild and cultivated species of A. barbadensis were isolated by a tissue separation method, and DNA sequencing was carried out by using the sequence analysis of the ribosomal rDNA-ITS region, and the pathogenic fungi were classified and identified by finally combining morphological observations. The results showed that the main fungal diseases were root rot and leaf rot disease caused by Fusarium oxysporum, leaf spot disease caused by Curvularia lunata, anthracnose caused by Colletotrichum boninense, and brown spot disease caused by Alternaria alternata on A. barbadensis. Full article

(This article belongs to the Collection Plant Growth-Promoting Bacteria: Mechanisms and Applications)

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15 pages, 1818 KiB

Open AccessArticle

Investigating Aerobic Hive Microflora: Role of Surface Microbiome of Apis Mellifera

by Grigory Kashchenko, Amir Taldaev, Leonid Adonin and Daniil Smutin

Biology 2025, 14(1), 88; https://doi.org/10.3390/biology14010088 - 17 Jan 2025

Viewed by 678

Abstract

This study investigated the surface microbiome of the honeybee (Apis mellifera), focusing on the diversity and functional roles of its associated microbial communities. While the significance of the microbiome to insect health and behavior is increasingly recognized, research on invertebrate surface [...] Read more.

This study investigated the surface microbiome of the honeybee (Apis mellifera), focusing on the diversity and functional roles of its associated microbial communities. While the significance of the microbiome to insect health and behavior is increasingly recognized, research on invertebrate surface microbiota lags behind that of vertebrates. A combined metagenomic and cultivation-based approach was employed to characterize the bacterial communities inhabiting the honeybee exoskeleton. Our findings reveal a complex and diverse microbiota exhibiting significant spatial and environmental heterogeneity. The identification of antimicrobial compound producers, validated through both culture and metagenomic analyses, including potentially novel Actinobacteria species, underscores the potential impact of these microbial communities on honeybee health, behavior, and hive dynamics. This research contributes to a more profound ecological understanding of the honeybee microbiome, particularly in its winter configuration. Full article

(This article belongs to the Special Issue The Biology and Behavior of Bees)

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28 pages, 2847 KiB

Open AccessReview

Application of Natural Antioxidants as Feed Additives in Aquaculture: A Review

by Xiaodan Hu, Wenjing Ma, Disen Zhang, Zikun Tian, Yuanqiang Yang, Yi Huang and Yuhang Hong

Biology 2025, 14(1), 87; https://doi.org/10.3390/biology14010087 - 17 Jan 2025

Viewed by 707

Abstract

Oxidative stress, a critical factor affecting the health and productivity of aquatic organisms, arises from the imbalance between reactive oxygen species (ROS) production and antioxidant defenses. In aquaculture, natural antioxidants have gained increasing attention as sustainable feed additives to mitigate oxidative damage, enhance [...] Read more.

Oxidative stress, a critical factor affecting the health and productivity of aquatic organisms, arises from the imbalance between reactive oxygen species (ROS) production and antioxidant defenses. In aquaculture, natural antioxidants have gained increasing attention as sustainable feed additives to mitigate oxidative damage, enhance immune responses, and improve overall growth performance. This review provides a comprehensive synthesis of the antioxidative mechanisms of key natural antioxidants, including carotenoids, polysaccharides, vitamins, polyphenols, and flavonoids. By neutralizing ROS and modulating cellular signaling pathways such as Nrf2/ARE, these compounds offer significant protective effects against oxidative damage in aquatic species. The manuscript consolidates recent advancements in antioxidant research, highlighting their practical applications in feed formulation and their role in promoting sustainability in aquaculture. This review aims to provide an integrative framework for understanding natural antioxidants’ potential, guiding future research and practical implementation in aquaculture systems. Full article

(This article belongs to the Section Developmental and Reproductive Biology)

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20 pages, 3235 KiB

Open AccessArticle

Perturbations in Microbial Communities at Hydrothermal Vents of Panarea Island (Aeolian Islands, Italy)

by Annamaria Gallo, Fabio Sposito, Manfredi Longo, Gianluca Lazzaro, Cinzia Giuseppina Caruso, Sabina Morici, Sergio Scirè Scappuzzo, Slobodanka Radovic, Valeria Villanova, Luca Vecchioni, Marco Arculeo and Rosa Alduina

Biology 2025, 14(1), 86; https://doi.org/10.3390/biology14010086 - 17 Jan 2025

Viewed by 586

Abstract

Marine hydrothermal ecosystems represent extreme environments connected to submarine volcanic areas characterized by vents, having high temperatures and particular chemical compositions. The hydrothermal marine system of Panarea, located in one of the seven small islands belonging to the Aeolian Archipelago (southern Tyrrhenian Sea), [...] Read more.

Marine hydrothermal ecosystems represent extreme environments connected to submarine volcanic areas characterized by vents, having high temperatures and particular chemical compositions. The hydrothermal marine system of Panarea, located in one of the seven small islands belonging to the Aeolian Archipelago (southern Tyrrhenian Sea), is characterized by a range of vents exhibiting diverse physical and chemical conditions. We aimed to analyze the microbial community of a peculiar hot spring belonging to the Panarea hydrothermal field, known as “Black Point” (BP), in two separate sampling expeditions (May and August). Our results demonstrated that the chemical–physical variations within this hydrothermal vent, such as temperature fluctuations, mineral content, and hydrothermal fluid dynamics, play a role in shaping the structure and diversity of microbial communities. The differences between the two sampling expeditions suggest that seasonal changes, i.e., in temperature, pH, and redox potential (Eh), could drive microbial community shifts over time. Full article

(This article belongs to the Section Marine Biology)

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7 pages, 185 KiB

Open AccessCommentary

Integrating New Approach Methodologies to Address Environmental Pancreatic Toxicity and Metabolic Disorders

by Yue Ge

Biology 2025, 14(1), 85; https://doi.org/10.3390/biology14010085 - 17 Jan 2025

Viewed by 388

Abstract

Advancing our understanding of pancreatic toxicity and metabolic disorders caused by environmental exposures requires innovative approaches. The pancreas, a vital organ for glucose regulation, is increasingly recognized as a target of harm from environmental chemicals and dietary factors. Traditional toxicological methods, while foundational, [...] Read more.

Advancing our understanding of pancreatic toxicity and metabolic disorders caused by environmental exposures requires innovative approaches. The pancreas, a vital organ for glucose regulation, is increasingly recognized as a target of harm from environmental chemicals and dietary factors. Traditional toxicological methods, while foundational, often fail to address the mechanistic complexities of pancreatic dysfunction, particularly under real-world conditions involving multiple exposures. New Approach Methodologies (NAMs)—including high-throughput screening (HTS), OMICS technologies, computational modeling, and advanced in vitro systems—offer transformative tools to tackle these challenges. NAMs enable the identification of mechanistic pathways, improve testing efficiency, and reduce reliance on animal testing. This commentary explores the integration of NAMs into pancreatic toxicity screening, addresses critical gaps in evaluating the cumulative risks of chemical and dietary exposures, and proposes solutions for integrating the pancreas into toxicity screening through NAMs. By highlighting recent advancements and emphasizing their adoption in environmental toxicity assessment frameworks, this work demonstrates the potential of NAMs to revolutionize environmental health research, inspire interdisciplinary collaboration, and protect public health. Full article

(This article belongs to the Special Issue Advances in Omics Approaches for Understanding Metabolic Disorders: Environmental and Nutritional Perspectives)

17 pages, 3883 KiB

Open AccessArticle

Molecular Mechanisms Underlying Substance Transport, Signal Transduction, and Anti-Stress Regulation, as Well as Anti-Alkaline Regulation via Bursicon in the Cerebral Ganglion of Chinese Mitten Crab Eriocheir sinensis Under Alkaline Stress

by Meiyao Wang, Jun Zhou, Jiachun Ge, Gangchun Xu and Yongkai Tang

Biology 2025, 14(1), 84; https://doi.org/10.3390/biology14010084 - 16 Jan 2025

Viewed by 626

Abstract

(1) Background: Global climate change is intensifying, and the vigorous development and utilization of saline–alkali land is of great significance. As an important economic aquatic species in the context of saline–alkali aquaculture, it is highly significant to explore the regulatory mechanisms of Eriocheir [...] Read more.

(1) Background: Global climate change is intensifying, and the vigorous development and utilization of saline–alkali land is of great significance. As an important economic aquatic species in the context of saline–alkali aquaculture, it is highly significant to explore the regulatory mechanisms of Eriocheir sinensis under alkaline conditions. In particular, the brain (cerebral ganglion for crustaceans) serves as a vital regulatory organ in response to environmental stress; (2) Methods: In this study, a comparative transcriptome approach was employed to investigate the key regulatory genes and molecular regulatory mechanisms in the cerebral ganglion of E. sinensis under alkaline stress. (3) Results: The results demonstrated that the cerebral ganglion of E. sinensis exhibited a positive response to acute alkaline stress. Pathways associated with signal transduction and substance transportation, such as “phagosome” and “regulation of actin cytoskeleton”, along with regulatory genes involved in antioxidation, were upregulated synergistically to maintain homeostasis under alkaline stress. Furthermore, it was discovered for the first time that bursicon plays a positive regulatory role in the adaptation of E. sinensis to alkalinity. (4) Conclusions: The present study elucidates the molecular regulatory pattern of the cerebral ganglion in E. sinensis under acute alkaline stress as well as revealing a novel role of bursicon in facilitating adaptation to alkalinity in E. sinensis, providing valuable theoretical insights into the molecular regulatory mechanisms underlying the responses of cerebral ganglia to saline–alkali environments. These findings also offer a theoretical reference for promoting the sustainable development of the E. sinensis breeding industry under saline–alkali conditions. Full article

(This article belongs to the Special Issue Cellular and Molecular Mechanisms in Sensory–Metabolic Integration: From Signaling Pathways to Systemic Regulation)

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20 pages, 9421 KiB

Open AccessArticle

Cyperus esculentus var. sativus Adapts to Multiple Heavy Metal Stresses Through the Assembly of Endophytic Microbial Communities

by Qiaofeng Liu, Jialing Lai, Yaozhong Zhang and Xin Wang

Biology 2025, 14(1), 83; https://doi.org/10.3390/biology14010083 - 16 Jan 2025

Viewed by 509

Abstract

Interactions between plants and their endophytes alter their metabolic functions and ability to cope with abiotic stresses. In this study, high-throughput sequencing was used to analyze the species diversity and functions of endophytes in Cyperus esculentus var. sativus (CES) tubers under different heavy [...] Read more.

Interactions between plants and their endophytes alter their metabolic functions and ability to cope with abiotic stresses. In this study, high-throughput sequencing was used to analyze the species diversity and functions of endophytes in Cyperus esculentus var. sativus (CES) tubers under different heavy metal stress conditions. The results indicated that the number of observed endophytic species in the tubers increased under heavy metal stress (p < 0.05), leading to changes in species diversity and composition. The response of tuber endophytes to different metal concentrations varied, with certain endophytic bacteria and fungi, such as Pseudomonas, Novosphingobium, and Fusarium, showing increased abundance and becoming the dominant species in the tubers. Additionally, new endophytic genera, Actinophytocola and Monosporascus, emerged at specific metal concentrations (p < 0.05). Fatty acid salvage was enriched in the endophytes of CES, which may play an important role in assisting CES in responding to multiple heavy metal stresses. These findings showed that CES tuber endophytes undergo adaptive changes to support the ability of plants to cope with heavy metal stress. Full article

(This article belongs to the Topic Environmental Bioengineering and Geomicrobiology)

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13 pages, 3154 KiB

Open AccessArticle

Climate and Soil Properties Drive the Distribution of Minor and Trace Elements in Forest Soils of the Winter Olympic Core Area

by Xiaochang Wu, Huayong Zhang, Zhongyu Wang, Wang Tian and Zhao Liu

Biology 2025, 14(1), 82; https://doi.org/10.3390/biology14010082 - 16 Jan 2025

Viewed by 478

Abstract

Minor and trace elements in soil play a crucial role in regulating ecological processes that sustain the functionality of forest ecosystems. In this study, we have selected three conifer forests (Pinus sylvestris, Picea asperata, Larix principis-rupprechtii), one broadleaf forest [...] Read more.

Minor and trace elements in soil play a crucial role in regulating ecological processes that sustain the functionality of forest ecosystems. In this study, we have selected three conifer forests (Pinus sylvestris, Picea asperata, Larix principis-rupprechtii), one broadleaf forest (Betula Platyfilla) and one mixed forest of Betula Platyfilla and Larix principis-rupprechtii in the Winter Olympic core area and determined the pattern of 12 typical elements (B, Fe, V, Cr, Ni, Co, Mn, As, Cu, Zn, Sn and Se) in soils and their main drivers in the three different soil layers (A, B and C horizon) in each soil profile. Our results showed that the concentrations of B, Fe, Cr, Cu, Ni and Sn were mainly enriched in the broadleaf forest and mixed broadleaf–conifer forest zones, and the average concentrations of Co, Mn, V, Zn, As and Se were mainly enriched in coniferous forest zones in contrast. We have observed that the mean concentrations of Fe, Cr, Ni, Zn, As, Sn and Co increase with soil depth in the BP forest. The concentrations of Se and Cu were higher in the A layer than the C layer. The piecewise structural equation modeling (piecewiseSEM) results visualized a direct and negative effect on B, Fe, V, Cr and Ni concentrations due to soil temperature, while the concentrations of Se is mainly influenced by soil temperature and soil properties. Full article

(This article belongs to the Special Issue Biogeochemical Element Cycling in Plant–Soil Systems: Implications for Ecosystem Dynamics and Services)

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18 pages, 4814 KiB

Open AccessArticle

Exploring the Mechanisms of Iron Overload-Induced Liver Injury in Rats Based on Transcriptomics and Proteomics

by Yujia Shu, Xuanfu Wu, Dongxu Zhang, Shuxia Jiang and Wenqiang Ma

Biology 2025, 14(1), 81; https://doi.org/10.3390/biology14010081 - 16 Jan 2025

Viewed by 489

Abstract

Iron is a trace element that is indispensable for the growth and development of animals. Excessive iron supplementation may lead to iron overload and elevated reactive oxygen species (ROS) production in animals, causing cellular damage. Nevertheless, the precise mechanism by which iron overload [...] Read more.

Iron is a trace element that is indispensable for the growth and development of animals. Excessive iron supplementation may lead to iron overload and elevated reactive oxygen species (ROS) production in animals, causing cellular damage. Nevertheless, the precise mechanism by which iron overload causes cell injury remains to be fully elucidated. In this study, 16 male SD rats aged 6 to 7 weeks were randomly assigned to either a control group (CON) or an iron overload group (IO). Rats in the iron overload group received 150 mg/kg iron dextran injections every three days for a duration of four weeks. The results indicated that iron treatment with iron dextran significantly increased the scores of steatosis (p < 0.05) and inflammation (p < 0.05) in the NAS score. The integrated transcriptomic and proteomic analysis suggests that HO-1 and Lnc286.2 are potentially significant in iron overload-induced liver injury in rats. In vitro experiments utilizing ferric ammonium citrate (FAC) were conducted to establish an iron overload model in rat liver-derived BRL-3A cells. The result found that FAC treatment can significantly increase the BRL-3A cell’s Fe²⁺ content (p < 0.05), ROS (p < 0.01), lipid ROS (p < 0.01) levels, and the expression of the HO-1 gene and protein (p < 0.01), aligning with proteomic and transcriptomic findings. HO-1 inhibition can significantly decrease BRL-3A cell vitality (p < 0.01) and promote ROS (p < 0.05) and lipid ROS (p < 0.01), thus aggravating FAC-induced BRL-3A cell iron overload damage. Using the agonist of HO-1 agonist cobalt protoporphyrin (CoPP) to induce HO-1 overexpression can significantly alleviate the decrease in FAC-induced BRL-3A cell viability (p < 0.01), ROS (p < 0.01), and lipid ROS (p < 0.01). In addition, siLnc286.2 treatment can increase HO-1 expression, alleviate the decline of FAC-induced BRL-3A cell activity, and increase lipid ROS (p < 0.05) content. In conclusion, the findings of this study suggest that by suppressing the expression of Lnc286.2, we can enhance the expression of HO-1, which in turn alleviates lipid peroxidation in cells and increases their antioxidant capacity, thereby exerting a protective effect against liver cell injury induced by iron overload. Full article

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15 pages, 648 KiB

Open AccessArticle

Impact of Mating Methods and Semen Preservation on Reproductive and Growth Performances in Palestinian Assaf Sheep

by Wael Halaweh, Samia Khnissi, Ikram Ben Souf, Muayad Salman and Naceur M’Hamdi

Biology 2025, 14(1), 80; https://doi.org/10.3390/biology14010080 - 16 Jan 2025

Viewed by 594

Abstract

As global demand for sheep products increases, improving reproductive efficiency and lamb growth performance has become a priority for sheep farmers. Artificial insemination (AI) offers several advantages over natural mating, including improved genetic selection and disease control. This study contributes to understanding the [...] Read more.

As global demand for sheep products increases, improving reproductive efficiency and lamb growth performance has become a priority for sheep farmers. Artificial insemination (AI) offers several advantages over natural mating, including improved genetic selection and disease control. This study contributes to understanding the impact of different mating methods and semen preservation techniques on reproductive performance and growth traits in Palestinian Assaf sheep under local breeding conditions. The research included 123 adult Assaf ewes from two farms, which were hormonally synchronized and divided into three groups for different reproductive biotechnologies. Group 1 (G1) comprised 50 ewes inseminated with frozen semen straws, while Group 2 (G2) had 37 ewes inseminated with fresh semen from genetically superior rams. Both G1 and G2 used 0.5 mL straws containing 250 million sperm, with insemination occurring 48 h post sponge removal and eCG hormone injection. Group 3 (G3) consisted of 36 ewes that underwent natural mating at a ratio of 1 ram to 6 ewes. The study revealed that insemination methods significantly affected fertility rates (45.4, 61.1, and 71.9% for G1, G2, and G3, respectively; p < 0.05). Artificial insemination notably enhanced lamb performance indicators (p < 0.05), although it did not significantly influence prolific lambing (p > 0.05). Prolific lambing significantly impacted birth weight, weaning weight, and average daily gain at 60 days across all groups (p < 0.05), but not the average daily gain or final weight at 180 days (p > 0.05). The management system significantly affected birth and weaning weights at 60 days (p < 0.05), but not the final weight at 180 days or prolific lambing (p > 0.05). Lamb sex significantly influenced average daily gains at 60 and 180 days, as well as final weight at 180 days (p < 0.05). The findings suggest that, while artificial insemination with semen from elite rams may reduce fertility rates, it significantly improves lamb performance rates. In conclusion, our study demonstrates that, while natural mating offers higher fertility rates, AI with fresh semen can be a valuable tool for improving lamb growth performance in Palestinian Assaf sheep. These findings provide valuable insights for sheep farmers in the region to optimize reproductive strategies and enhance lamb production Full article

(This article belongs to the Section Biotechnology)

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22 pages, 1991 KiB

Open AccessArticle

Intraspecific Morphometric Variation in a New Species of Ceratomyxa Thélohan 1892 (Cnidaria) from the South Atlantic Ocean: An Ecomorphological Study Using Geometric Morphometrics

by Delfina M. P. Cantatore, Martina Lisnerová, Paula S. Marcotegui, María A. Rossin and Astrid S. Holzer

Biology 2025, 14(1), 79; https://doi.org/10.3390/biology14010079 - 16 Jan 2025

Viewed by 555

Abstract

A new species of Ceratomyxa (Ceratomyxidae, Myxosporea) was found infecting the gall bladder of the Argentine croaker Umbrina canosai Berg 1895 (Sciaenidae, Perciformes) from the Argentine sea. Using an integrative taxonomic approach that combines morphological, bioecological, and molecular analyses, we provide evidence that [...] Read more.

A new species of Ceratomyxa (Ceratomyxidae, Myxosporea) was found infecting the gall bladder of the Argentine croaker Umbrina canosai Berg 1895 (Sciaenidae, Perciformes) from the Argentine sea. Using an integrative taxonomic approach that combines morphological, bioecological, and molecular analyses, we provide evidence that clearly differentiates this species from known taxa and formally describe Ceratomyxa fialai as a new species. This study is the first to apply landmark-based geometric morphometrics (GM) in myxozoan research, providing a detailed analysis of conspecific morphometric variation of ceratomyxid myxospores, examining their natural variation within and among different ceratomyxids infecting the gall bladder of U. canosai. Using GM analyses, we successfully capture and quantify phenotypic variation at the organismal level. Our results suggest that myxospore shape variation may be driven by both developmental noise and phenotypic plasticity. The work highlights the utility of GM in advancing the understanding of myxozoan morphology and its evolutionary implications and emphasizes the need for further research on myxospore shape evolution and its ecological and adaptive significance in natural populations. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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16 pages, 2562 KiB

Open AccessArticle

Morphological, Physiological, and Transcriptional Changes in Crocus sativus L. Under In Vitro Polyethylene Glycol-Induced Water Stress

by Suman Gusain and Rohit Joshi

Biology 2025, 14(1), 78; https://doi.org/10.3390/biology14010078 - 15 Jan 2025

Viewed by 635

Abstract

Saffron (Crocus sativus L.), a perennial geophyte from the Iridaceae family, blooms in autumn and thrives in Mediterranean-like climates. It is highly valued for its therapeutic and commercial uses. While saffron cultivation generally requires minimal water, insufficient irrigation can negatively impact its [...] Read more.

Saffron (Crocus sativus L.), a perennial geophyte from the Iridaceae family, blooms in autumn and thrives in Mediterranean-like climates. It is highly valued for its therapeutic and commercial uses. While saffron cultivation generally requires minimal water, insufficient irrigation can negatively impact its yield. Although numerous studies have explored the detrimental impact of drought on saffron under field conditions, its impact in vitro remains largely unexplored. The present study aims to investigate the effects of polyethylene glycol (PEG) 6000 at concentrations of 0%, 5%, and 10% in inducing drought stress on saffron shoots under controlled conditions. The research focuses on evaluating morphological, physiological, and biochemical changes and analyzing the expression of drought-responsive genes. Shoot establishment was carried out on Murashige and Skoog (MS) medium supplemented with 6 mg/L 6-benzyladenine (BAP) and 1 mg/L naphthaleneacetic acid (NAA), while PEG 6000 was used to induce drought stress. Various morphological, biochemical, and molecular parameters were assessed 30 days after stress induction. Increasing PEG concentrations in the medium significantly reduced shoot regeneration, leading to increased apical tissue browning. Significant chlorophyll and carotenoid level changes were observed in shoots exposed to higher PEG concentrations. PEG-induced drought led to decreased plant growth and biomass and lowered relative water content of leaves. Lipid peroxidation, membrane damage, and H₂O₂ content increased, indicating heightened stress levels. Proline concentration significantly increased in plants subjected to 5% and 10% PEG compared to controls. Non-enzymatic antioxidant activity (phenolics, flavonoids, % inhibition, total reducing power, and total antioxidant activity) also increased with the severity of stress. In contrast, a decrease in the activity of superoxide dismutase (SOD) and peroxidase was observed in PEG-treated shoots. Significant changes in the expression of drought-related genes, such as DREB1, DREB2, AREB1, DHN1 (Dehydrin), and SnRK2, were observed in shoots exposed to 5% and 10% PEG. In conclusion, the study highlights that PEG, as an inducer of drought stress, negatively impacts saffron’s growth and physiological responses under in vitro conditions. It also triggers significant changes in biochemical and molecular mechanisms, indicating the plant’s susceptibility to water scarcity. Full article

(This article belongs to the Special Issue Molecular Genetics in Plant Responses to Abiotic Stress)

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19 pages, 4441 KiB

Open AccessArticle

Olfactory Impairment and Recovery in Zebrafish (Danio rerio) Following Cadmium Exposure

by Chiara Maria Motta, Rosa Carotenuto, Chiara Fogliano, Luigi Rosati, Pabitra Denre, Raffaele Panzuto, Rossana Romano, Gianluca Miccoli, Palma Simoniello and Bice Avallone

Biology 2025, 14(1), 77; https://doi.org/10.3390/biology14010077 - 15 Jan 2025

Viewed by 560

Abstract

Anthropic activities have significantly elevated cadmium levels, making it a significant stressor in aquatic ecosystems. Present in high concentrations across water bodies, cadmium is known to bioaccumulate and biomagnify throughout the food chain. While the toxic effects of cadmium on the organs and [...] Read more.

Anthropic activities have significantly elevated cadmium levels, making it a significant stressor in aquatic ecosystems. Present in high concentrations across water bodies, cadmium is known to bioaccumulate and biomagnify throughout the food chain. While the toxic effects of cadmium on the organs and tissues of aquatic species are well-documented, little is known about its impact on sensory systems crucial for survival. Consequently, this study investigated the impact of short-term exposure (96 h) to 25 µM cadmium chloride on the olfactory system of adult zebrafish. The research aimed to assess structural and functional changes in the zebrafish’s olfactory lamellae, providing a deeper understanding of how cadmium affects the sense of smell in this aquatic species. After exposure, cyto-anatomical alterations in the lamellae were analysed using light microscopy and immunocytochemistry. They revealed severe lamellar edema, epithelial thickening, and an increased number of apoptotic and crypt cells. Rodlet and goblet cells also increased by 3.5- and 2.5-fold, respectively, compared to control lamellae, and collagen density in the lamina propria increased 1.7-fold. Cadmium upregulated metallothioneins and increased the number of PCNA-positive cells. The olfactory function was assessed through a behavioural odour recognition test, followed by a recovery phase in which zebrafish exposed to cadmium were placed in clean water for six days. The exposed fish performed poorly, failing to reach food in five consecutive trials. However, lamellar damage was reduced after the recovery period, and their performance improved, becoming comparable to the control group. These results suggest that cadmium disrupts the sense of smell, and that recovery is possible after short-term exposure. This evidence sheds light on aspects of animal survival that are often overlooked when assessing environmental pollution. Full article

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30 pages, 657 KiB

Open AccessReview

Regulation of Stress-Induced Immunosuppression in the Context of Neuroendocrine, Cytokine, and Cellular Processes

by Evgenii Balakin, Ksenia Yurku, Mark Ivanov, Alexander Izotov, Valeriya Nakhod and Vasiliy Pustovoyt

Biology 2025, 14(1), 76; https://doi.org/10.3390/biology14010076 - 15 Jan 2025

Viewed by 541

Abstract

Understanding the regulatory mechanisms of stress-induced immunosuppression and developing reliable diagnostic methods are important tasks in clinical medicine. This will allow for the development of effective strategies for the prevention and treatment of conditions associated with immune system dysfunction induced by chronic stress. [...] Read more.

Understanding the regulatory mechanisms of stress-induced immunosuppression and developing reliable diagnostic methods are important tasks in clinical medicine. This will allow for the development of effective strategies for the prevention and treatment of conditions associated with immune system dysfunction induced by chronic stress. The purpose of this review is to conduct a comprehensive analysis and synthesis of existing data on the regulatory mechanisms of stress-induced immunosuppression. The review is aimed at identifying key neuroendocrine, cytokine, and cellular processes underlying the suppression of the immune response under stress. This study involved a search of scientific literature covering the neuroendocrine, cellular, and molecular mechanisms of stress-induced immunosuppression regulation, as well as modern methods for its diagnosis. Major international bibliographic databases covering publications in biomedicine, psychophysiology, and immunology were selected for the search. The results of the analysis identified key mechanisms regulating stress-induced immunosuppression. The reviewed publications provided detailed descriptions of the neuroendocrine and cytokine processes underlying immune response suppression under stress. A significant portion of the data confirms that the activation of the hypothalamic–pituitary–adrenal (HPA) axis and subsequent elevation of cortisol levels exert substantial immunosuppressive effects on immune cells, particularly macrophages and lymphocytes, leading to the suppression of innate and adaptive immune responses. The data also highlight the crucial role of cortisol and catecholamines (adrenaline and noradrenaline) in initiating immunosuppressive mechanisms under chronic stress. Full article

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18 pages, 2781 KiB

Open AccessArticle

Seasonal Dynamics of the Bacterial Community in Lake Urmia, a Hypersaline Ecosystem

by Robab Salami, Abbas Saidi, Mohammad Amin Hejazi, Bahman Panahi and Rasmieh Hamid

Biology 2025, 14(1), 75; https://doi.org/10.3390/biology14010075 - 15 Jan 2025

Viewed by 615

Abstract

Lake Urmia is one of the world’s most unique and hypersaline aquatic ecosystems. The aim of this study was to investigate the diversity, abundance and frequency of these microorganisms in water samples from the eastern regions of the lake over four seasons. Amplicon [...] Read more.

Lake Urmia is one of the world’s most unique and hypersaline aquatic ecosystems. The aim of this study was to investigate the diversity, abundance and frequency of these microorganisms in water samples from the eastern regions of the lake over four seasons. Amplicon sequencing for the 16S rRNA gene was performed to examine bacterial communities in the samples. The study revealed significant seasonal variations in water quality parameters and their influence on the microbial communities. Majority and rarity analyses showed that winter and spring had higher core abundance and higher Gini index values, indicating a greater dominance of certain genera, while autumn and summer had a more balanced distribution. Analysis of beta diversity using the Bray–Curtis dissimilarity index emphasized that bacterial communities diverge most strongly in summer and winter, reflecting the significant changes in the environment with the season. Overall, understanding the seasonal variation in water chemistry and bacterial communities is critical for effective ecosystem management and conservation efforts. Full article

(This article belongs to the Section Ecology)

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20 pages, 1177 KiB

Open AccessArticle

Climate Projections and Pacific Lamprey Conservation: Evidence That Larvae in Natural Conditions May Be Resilient to Climate Warming

by Timothy A. Whitesel and Paul M. Sankovich

Biology 2025, 14(1), 74; https://doi.org/10.3390/biology14010074 - 15 Jan 2025

Viewed by 553

Abstract

In many areas where larval Pacific lampreys currently rear, maximum stream temperatures may approach 27–31 °C during the next 75 years. Whether larval Pacific lampreys in natural conditions can tolerate these temperatures is unknown. To evaluate this ability, we conducted Direct Acute Exposure [...] Read more.

In many areas where larval Pacific lampreys currently rear, maximum stream temperatures may approach 27–31 °C during the next 75 years. Whether larval Pacific lampreys in natural conditions can tolerate these temperatures is unknown. To evaluate this ability, we conducted Direct Acute Exposure (DAE) experiments using simulated natural daily temperature (SNT) cycles in the laboratory and occupancy surveys in the Umatilla River (river). When evaluated relative to daily maximum temperatures, after seven days in DAE experiments, 78–100% of larvae survived in 29.1 °C, only larvae acclimated to 26.8 °C survived in 31.0 °C, and no larvae survived in 33.6 °C. Based on daily maximum temperatures, the ultimate upper incipient lethal temperature was estimated to be >30.8 °C using a time to death analysis and >32.0 °C using a percent mortality analysis. Some larvae acclimated to 31.0 °C were also able to survive four consecutive days with a daily maximum temperature of 33.6 °C. In 2018–2020, warm areas of the river experienced maximum temperatures in July and August that ranged from 27.7 to 33.9 °C, while cool areas experienced maximum temperatures <27.7 °C. Before, during and after the period of maximum temperatures each year, larvae occupied both areas. Detection probabilities ranged from 0.83 to 1.00 and were similar for each area and for all survey periods. This work suggests that ectothermic, larval Pacific lampreys in natural environments may be resilient to the water temperatures that are likely to result from climate warming. It is unclear whether relatively high but sublethal temperatures may impact the behavior, and ultimately survival, of larval Pacific lampreys. Full article

(This article belongs to the Special Issue Coping with Temperature Increase Induced by Climate Warming: Trends in Ectothermic Species)

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